RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 LXNQ9BS40 222 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 RPAP1Q9BWH6 1393 aaPredicted RBP12.25□□□□□ -0.45
USP53-201ENST00000274030 COPEO14579 308 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 FTLP02792 175 aaPredicted RBP12.25□□□□□ -0.45
USP53-201ENST00000274030 ADCY2Q08462 1091 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 PODNQ7Z5L7 613 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 PSPC1Q8WXF1 523 aaKnown RBP12.25□□□□□ -0.45
USP53-201ENST00000274030 CCDC195A0A1B0GUA6 201 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 H0Y3Z8 333 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 QARSP47897 775 aaKnown RBP12.25□□□□□ -0.45
USP53-201ENST00000274030 GPC3P51654 580 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 EIF3BP55884 814 aaKnown RBP12.25□□□□□ -0.45
USP53-201ENST00000274030 KRT33BQ14525 404 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 ZNF579Q8NAF0 562 aaKnown RBP12.25□□□□□ -0.45
USP53-201ENST00000274030 FBXO41Q8TF61 875 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 TBC1D22BQ9NU19 505 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 TXLNGQ9NUQ3 528 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 BARHL2Q9NY43 387 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 ORC6Q9Y5N6 252 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 KDM5CP41229 1560 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 ARHGEF37A1IGU5 675 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 PPFIA2O75334 1257 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 GRM4Q14833 912 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 KLC3Q6P597 504 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 ZNF564Q8TBZ8 553 aaPredicted RBP12.25□□□□□ -0.45
USP53-201ENST00000274030 VPS39Q96JC1 886 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 SARS2Q9NP81 518 aaKnown RBP12.25□□□□□ -0.45
USP53-201ENST00000274030 TOPORSQ9NS56 1045 aaPredicted RBP12.25□□□□□ -0.45
USP53-201ENST00000274030 PBRM1Q86U86 1689 aa12.25□□□□□ -0.45
USP53-201ENST00000274030 KRT37O76014 449 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 MOCS2O96007 188 aaPredicted RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 ADORA2BP29275 332 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 ARL4CP56559 192 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 TAF11Q15544 211 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 GRAMD1BQ3KR37 738 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 EMBQ6PCB8 327 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 SZRD1Q7Z422 152 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 FAM84BQ96KN1 310 aaPredicted RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 FSD1LQ9BXM9 530 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 NPHP3-ACAD11A0A0J9YXS1 232 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 CCDC188H7C350 402 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 PIK3R2O00459 728 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 STMN1P16949 149 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 PHKA2P46019 1235 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 NME3Q13232 169 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 SHC4Q6S5L8 630 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 GLYCTKQ8IVS8 523 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 FAM20AQ96MK3 541 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 TRAIPQ9BWF2 469 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 POLR3FQ9H1D9 316 aaPredicted RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 ADGBQ8N7X0 1667 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 PODXLO00592 558 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 LUC7L3O95232 432 aaKnown RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 GUCY2CP25092 1073 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 KRT80Q6KB66 452 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 EFHD1Q9BUP0 239 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 TRIM4Q9C037 500 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 FAM217BQ9NTX9 383 aaPredicted RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 HMGB1P1B2RPK0 211 aaPredicted RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 P4HBP07237 508 aaKnown RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 KRT10P13645 584 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 PSMC1P62191 440 aaKnown RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 E2F4Q16254 413 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 CRLF3Q8IUI8 442 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 CLEC10AQ8IUN9 316 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 GCNAQ96QF7 691 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 INTS2Q9H0H0 1204 aaKnown RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 RGL1Q9NZL6 768 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 STK36Q9NRP7 1315 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 GNA15P30679 374 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 GGCXP38435 758 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 KRT76Q01546 638 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 POU5F1BQ06416 359 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 TAF1BQ53T94 588 aaPredicted RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 ATG16L1Q676U5 607 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 SARM1Q6SZW1 724 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 BZW1Q7L1Q6 419 aaKnown RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 PPM1NQ8N819 430 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 EXOC4Q96A65 974 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 EDEM3Q9BZQ6 932 aa12.24□□□□□ -0.45
USP53-201ENST00000274030 SUCLA2Q9P2R7 463 aaPredicted RBP12.24□□□□□ -0.45
USP53-201ENST00000274030 MAGOHP61326 146 aaKnown RBP12.23□□□□□ -0.45
USP53-201ENST00000274030 THEM5Q8N1Q8 247 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 PROM2Q8N271 834 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 RBM41Q96IZ5 413 aaKnown RBP12.23□□□□□ -0.45
USP53-201ENST00000274030 EIF2AK1Q9BQI3 630 aaKnown RBP12.23□□□□□ -0.45
USP53-201ENST00000274030 SIK2Q9H0K1 926 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 SMYD3Q9H7B4 428 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 ASNSD1Q9NWL6 643 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 DCTN4Q9UJW0 460 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 SYNGAP1Q96PV0 1343 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 PVALEFA0A1B0GWK0 134 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 C2orf69Q8N8R5 385 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 FBXL13Q8NEE6 735 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 MAPK13O15264 365 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 TTI1O43156 1089 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 CHEK2O96017 543 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 SYCP2LQ5T4T6 812 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 CCNYL1Q8N7R7 359 aa12.23□□□□□ -0.45
USP53-201ENST00000274030 PRPF38AQ8NAV1 312 aaKnown RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms