RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ACCSQ96QU6 501 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 IGKV6D-21A0A0A0MT36 114 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 ASB14A6NK59 587 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 LRRC53A6NM62 1247 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 NOL4O94818 638 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 ADSSP30520 456 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 TSR1Q2NL82 804 aaKnown RBP18.06■□□□□ 0.48
USP4-201ENST00000265560 PLEKHH3Q7Z736 793 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 NEK11Q8NG66 645 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 AFG1LQ8WV93 481 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 SLC7A3Q8WY07 619 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 RNPEPQ9H4A4 650 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 GPBP1L1Q9HC44 474 aaPredicted RBP18.06■□□□□ 0.48
USP4-201ENST00000265560 TRPC6Q9Y210 931 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 FRMD4BQ9Y2L6 1034 aa18.06■□□□□ 0.48
USP4-201ENST00000265560 ADCY6O43306 1168 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 PNMA6AP0CW24 399 aaPredicted RBP18.05■□□□□ 0.48
USP4-201ENST00000265560 PSMC2P35998 433 aaKnown RBP18.05■□□□□ 0.48
USP4-201ENST00000265560 GTF2BQ00403 316 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 CYP27A1Q02318 531 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 CCL14Q16627 93 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 FAM110CQ1W6H9 321 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 FRMD5Q7Z6J6 570 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 SCFD2Q8WU76 684 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 DKC1O60832 514 aaKnown RBP eCLIP18.05■□□□□ 0.48
USP4-201ENST00000265560 CYP2B6P20813 491 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 CNGA1P29973 690 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 NYAP1Q6ZVC0 841 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 CCDC127Q96BQ5 260 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 BICD1Q96G01 975 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 MAML3Q96JK9 1138 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 POP1Q99575 1024 aaKnown RBP18.05■□□□□ 0.48
USP4-201ENST00000265560 SLC45A1Q9Y2W3 748 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 ARID2Q68CP9 1835 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 AFPP02771 609 aaKnown RBP18.05■□□□□ 0.48
USP4-201ENST00000265560 SRGAP2CP0DJJ0 459 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 NCKAP1LP55160 1127 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 TAS1R3Q7RTX0 852 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 CBWD2Q8IUF1 395 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 DNAJC7Q99615 494 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 HSPBP1Q9NZL4 362 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 TRIM10Q9UDY6 481 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 ADGRG1Q9Y653 693 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 LRRC37A2A6NM11 1700 aa18.05■□□□□ 0.48
USP4-201ENST00000265560 HNRNPDLO14979 420 aaKnown RBP18.04■□□□□ 0.48
USP4-201ENST00000265560 CSDE1O75534 798 aaKnown RBP18.04■□□□□ 0.48
USP4-201ENST00000265560 GLRA2P23416 452 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 CYP2C19P33261 490 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 MARSP56192 900 aaKnown RBP18.04■□□□□ 0.48
USP4-201ENST00000265560 TRIM14Q14142 442 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 CBWD6Q4V339 395 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 CBWD3Q5JTY5 395 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 CBWD5Q5RIA9 395 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 CYP26C1Q6V0L0 522 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 METTL13Q8N6R0 699 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 MCPH1Q8NEM0 835 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 KIFAP3Q92845 792 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 BORCS6Q96GS4 357 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 ZBED6P86452 979 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 FAM160B1Q5W0V3 765 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 SLC39A4Q6P5W5 647 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 ZBTB45Q96K62 511 aaPredicted RBP18.04■□□□□ 0.48
USP4-201ENST00000265560 NRBP2Q9NSY0 501 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 FLRT1Q9NZU1 646 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 TRPM7Q96QT4 1865 aa18.04■□□□□ 0.48
USP4-201ENST00000265560 TTLL13PA6NNM8 815 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 FANCGO15287 622 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 STRNO43815 780 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 ARHGAP1Q07960 439 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 GRB14Q14449 540 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 SEZ6Q53EL9 994 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 FOXR2Q6PJQ5 311 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 MAMDC4Q6UXC1 1216 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 IFT74Q96LB3 600 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 CEP89Q96ST8 783 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 MAF1Q9H063 256 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 DHX33Q9H6R0 707 aaKnown RBP18.03■□□□□ 0.48
USP4-201ENST00000265560 DMAC2Q9NW81 257 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 MAPTP10636 758 aaKnown RBP18.03■□□□□ 0.48
USP4-201ENST00000265560 HARSP12081 509 aaKnown RBP18.03■□□□□ 0.48
USP4-201ENST00000265560 CYP4F22Q6NT55 531 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 TMTC1Q8IUR5 882 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 PRPF31Q8WWY3 499 aaKnown RBP18.03■□□□□ 0.48
USP4-201ENST00000265560 AJAP1Q9UKB5 411 aaPredicted RBP18.03■□□□□ 0.48
USP4-201ENST00000265560 EDN1P05305 212 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 PLCB4Q15147 1175 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 EXOC3L4Q17RC7 722 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 PLEKHO2Q8TD55 490 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 GTF3C2Q8WUA4 911 aaPredicted RBP18.03■□□□□ 0.48
USP4-201ENST00000265560 TINF2Q9BSI4 451 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 NUP58Q9BVL2 599 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 TMEM206Q9H813 350 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 GCNT4Q9P109 453 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 DNAI1Q9UI46 699 aa18.03■□□□□ 0.48
USP4-201ENST00000265560 EPN1Q9Y6I3 576 aaPredicted RBP18.03■□□□□ 0.48
USP4-201ENST00000265560 ADRB2P07550 413 aa18.02■□□□□ 0.48
USP4-201ENST00000265560 PON1P27169 355 aa18.02■□□□□ 0.48
USP4-201ENST00000265560 GCLMP48507 274 aa18.02■□□□□ 0.48
USP4-201ENST00000265560 IFNL1Q8IU54 200 aa18.02■□□□□ 0.48
USP4-201ENST00000265560 ZNF397Q8NF99 534 aaPredicted RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms