RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 MMTAG2Q9BU76 263 aaKnown RBP20.44■□□□□ 0.86
UPF1-201ENST00000262803 TSPYL2Q9H2G4 693 aaPredicted RBP20.44■□□□□ 0.86
UPF1-201ENST00000262803 ANGPTL2Q9UKU9 493 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 PPME1Q9Y570 386 aa20.44■□□□□ 0.86
UPF1-201ENST00000262803 SLC44A5Q8NCS7 719 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 KIFC3Q9BVG8 833 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 ACTR5Q9H9F9 607 aaPredicted RBP20.43■□□□□ 0.86
UPF1-201ENST00000262803 AP3B1O00203 1094 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 ZFXP17010 805 aaPredicted RBP20.43■□□□□ 0.86
UPF1-201ENST00000262803 HNRNPH2P55795 449 aaKnown RBP20.43■□□□□ 0.86
UPF1-201ENST00000262803 TTC23LQ6PF05 361 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 STOX1Q6ZVD7 989 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 SFR1Q86XK3 245 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 FGD4Q96M96 766 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 ISCA1Q9BUE6 129 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 DDX56Q9NY93 547 aaKnown RBP20.43■□□□□ 0.86
UPF1-201ENST00000262803 ZNF335Q9H4Z2 1342 aaPredicted RBP20.43■□□□□ 0.86
UPF1-201ENST00000262803 TXNRD1Q16881 649 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 KLHL38Q2WGJ6 581 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 MIGA2Q7L4E1 593 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 DACT3Q96B18 629 aaPredicted RBP20.43■□□□□ 0.86
UPF1-201ENST00000262803 KCNH4Q9UQ05 1017 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 ART3Q13508 389 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 PLAAQ9Y263 795 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 GLI2P10070 1586 aa20.43■□□□□ 0.86
UPF1-201ENST00000262803 RAD54LQ92698 747 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 NRBF2Q96F24 287 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 MRPL4Q9BYD3 311 aaKnown RBP20.42■□□□□ 0.86
UPF1-201ENST00000262803 ADAM22Q9P0K1 906 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 E9PMD0 336 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 PADI6Q6TGC4 694 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 FOXN1O15353 648 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 ZNF568Q3ZCX4 644 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 SNRNP48Q6IEG0 339 aaKnown RBP20.42■□□□□ 0.86
UPF1-201ENST00000262803 FAM49AQ9H0Q0 323 aaPredicted RBP20.42■□□□□ 0.86
UPF1-201ENST00000262803 EFNA5P52803 228 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 FRA10AC1Q70Z53 315 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 NOP9Q86U38 636 aaKnown RBP20.42■□□□□ 0.86
UPF1-201ENST00000262803 IFT43Q96FT9 208 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 MMP19Q99542 508 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 CD209Q9NNX6 404 aa20.42■□□□□ 0.86
UPF1-201ENST00000262803 TTC26A0AVF1 554 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 NR3C1P04150 777 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 PSMC5P62195 406 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 TEDDM1Q5T9Z0 273 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 SP8Q8IXZ3 490 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 RNF146Q9NTX7 359 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 DNAJC17Q9NVM6 304 aaKnown RBP20.41■□□□□ 0.86
UPF1-201ENST00000262803 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.41■□□□□ 0.86
UPF1-201ENST00000262803 USP17L15C9J2P7 530 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 USP17L13C9JLJ4 530 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 USP17L11C9JVI0 530 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 USP17L18D6R9N7 530 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 USP17L22D6RA61 530 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 USP17L17D6RBQ6 530 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 USP17L19D6RCP7 530 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 USP17L20D6RJB6 530 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 KRT7P08729 469 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 RPSAP08865 295 aaKnown RBP20.41■□□□□ 0.86
UPF1-201ENST00000262803 FCER1AP12319 257 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 USP17L24Q0WX57 530 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 SCARF1Q14162 830 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 BBS9Q3SYG4 887 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 FSCBQ5H9T9 825 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 USP17L6PQ6QN14 398 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 MAP3K20Q9NYL2 800 aaKnown RBP20.41■□□□□ 0.86
UPF1-201ENST00000262803 ACSL3O95573 720 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 MX2P20592 715 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 FOXO4P98177 505 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 GFPT1Q06210 699 aaPredicted RBP20.41■□□□□ 0.86
UPF1-201ENST00000262803 KCNH2Q12809 1159 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 PPWD1Q96BP3 646 aaKnown RBP20.41■□□□□ 0.86
UPF1-201ENST00000262803 WRNIP1Q96S55 665 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 OSTNP61366 133 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 COASYQ13057 564 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 PDCLQ13371 301 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 VEPH1Q14D04 833 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 FAM83BQ5T0W9 1011 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 TWF2Q6IBS0 349 aaKnown RBP20.41■□□□□ 0.86
UPF1-201ENST00000262803 KIRREL3Q8IZU9 778 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 FAF2Q96CS3 445 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 SLITRK6Q9H5Y7 841 aa20.41■□□□□ 0.86
UPF1-201ENST00000262803 TOM1L1O75674 476 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 QARSP47897 775 aaKnown RBP20.4■□□□□ 0.86
UPF1-201ENST00000262803 USP11P51784 963 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 GPC5P78333 572 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 HIBCHQ6NVY1 386 aaPredicted RBP20.4■□□□□ 0.86
UPF1-201ENST00000262803 EEPD1Q7L9B9 569 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 CELF1Q92879 486 aaKnown RBP20.4■□□□□ 0.86
UPF1-201ENST00000262803 SNX24Q9Y343 169 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 SNX2O60749 519 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 STAT3P40763 770 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 CACNB3P54284 484 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 EXOSC10Q01780 885 aaKnown RBP20.4■□□□□ 0.86
UPF1-201ENST00000262803 CDKL3Q8IVW4 592 aaPredicted RBP20.4■□□□□ 0.86
UPF1-201ENST00000262803 LRRC37BQ96QE4 947 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 STXBP3O00186 592 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 STILQ15468 1287 aa20.4■□□□□ 0.86
UPF1-201ENST00000262803 RWDD4Q6NW29 188 aaKnown RBP20.4■□□□□ 0.86
UPF1-201ENST00000262803 PDCD7Q8N8D1 485 aaKnown RBP20.4■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms