RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 FRMD5Q7Z6J6 570 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 NT5DC3Q86UY8 548 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 SYT2Q8N9I0 419 aaPredicted RBP10.91□□□□□ -0.66
LIG3-201ENST00000262327 SLC35G2Q8TBE7 412 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 IDI2Q9BXS1 227 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 ERVK-5Q9HDB9 667 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 PLCB1Q9NQ66 1216 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 FRMD3A2A2Y4 597 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 SPDYE3A6NKU9 549 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 CALUO43852 315 aaPredicted RBP10.91□□□□□ -0.66
LIG3-201ENST00000262327 HLA-DOAP06340 250 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 DRAP1Q14919 205 aaPredicted RBP10.91□□□□□ -0.66
LIG3-201ENST00000262327 TNIP1Q15025 636 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 PPP1R18Q6NYC8 613 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 LENG9Q96B70 501 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 ELMO3Q96BJ8 720 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 CYFIP2Q96F07 1278 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 PBKQ96KB5 322 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 SH2D3AQ9BRG2 576 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 PKD2L1Q9P0L9 805 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 TRAF3IP3Q9Y228 551 aa10.91□□□□□ -0.66
LIG3-201ENST00000262327 TGFB1I1O43294 461 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 IFFO1Q0D2I5 559 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 CBWD6Q4V339 395 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 CBWD3Q5JTY5 395 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 CBWD5Q5RIA9 395 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 DCAF12L1Q5VU92 463 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 ZNF746Q6NUN9 644 aaPredicted RBP10.9□□□□□ -0.66
LIG3-201ENST00000262327 NLGN2Q8NFZ4 835 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 ACTRT1Q8TDG2 376 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 EIF2AK1Q9BQI3 630 aaKnown RBP10.9□□□□□ -0.66
LIG3-201ENST00000262327 CD248Q9HCU0 757 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 DNAJC12Q9UKB3 198 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 RABGAP1Q9Y3P9 1069 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 TISP43B9A030 160 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 RAD17O75943 681 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 SHBGP04278 402 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 ZBTB48P10074 688 aaPredicted RBP10.9□□□□□ -0.66
LIG3-201ENST00000262327 RPA1P27694 616 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 CERKLQ49MI3 558 aaPredicted RBP10.9□□□□□ -0.66
LIG3-201ENST00000262327 CIAPIN1Q6FI81 312 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 CD302Q8IX05 232 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 FAM186BQ8IYM0 893 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 MTMR14Q8NCE2 650 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 AMFRQ9UKV5 643 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 SNX24Q9Y343 169 aa10.9□□□□□ -0.66
LIG3-201ENST00000262327 SMCHD1A6NHR9 2005 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 FAM13AO94988 1023 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 KRT13P13646 458 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 STAT1P42224 750 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 FNTAP49354 379 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 JAG1P78504 1218 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 CXCL9Q07325 125 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 EPM2AIP1Q7L775 607 aaPredicted RBP10.9□□□□□ -0.67
LIG3-201ENST00000262327 VPS36Q86VN1 386 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 CPNE8Q86YQ8 564 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 SLFN12Q8IYM2 578 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 ERMNQ8TAM6 284 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 LRRC45Q96CN5 670 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 CALR3Q96L12 384 aaKnown RBP10.9□□□□□ -0.67
LIG3-201ENST00000262327 THAP2Q9H0W7 228 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 ACP6Q9NPH0 428 aa10.9□□□□□ -0.67
LIG3-201ENST00000262327 TYW1Q9NV66 732 aaKnown RBP10.9□□□□□ -0.67
LIG3-201ENST00000262327 UTRNP46939 3433 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 F5H6K3 240 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 DDX39AO00148 427 aaKnown RBP10.89□□□□□ -0.67
LIG3-201ENST00000262327 PDXKO00764 312 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 FAM107AO95990 144 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 CFBP00751 764 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 SCP2P22307 547 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 RPS12P25398 132 aaKnown RBP10.89□□□□□ -0.67
LIG3-201ENST00000262327 USP8P40818 1118 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 MARCKSL1P49006 195 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 PLTPP55058 493 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 KLRC3Q07444 240 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 CUL1Q13616 776 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 IFI16Q16666 785 aaKnown RBP10.89□□□□□ -0.67
LIG3-201ENST00000262327 NBPF9Q3BBW0 867 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 RINT1Q6NUQ1 792 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 PPP4R3CPQ6ZMV5 832 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 TMC3Q7Z5M5 1100 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 SIAH1Q8IUQ4 282 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 ZC3H3Q8IXZ2 948 aaKnown RBP10.89□□□□□ -0.67
LIG3-201ENST00000262327 OGFOD1Q8N543 542 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 RAPGEF5Q92565 580 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 DYDC2Q96IM9 177 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 PCIF1Q9H4Z3 704 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 SWAP70Q9UH65 585 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 DDX20Q9UHI6 824 aaKnown RBP10.89□□□□□ -0.67
LIG3-201ENST00000262327 PNMA2Q9UL42 364 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 PITPNM2Q9BZ72 1349 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 COL2A1P02458 1487 aaPredicted RBP10.89□□□□□ -0.67
LIG3-201ENST00000262327 PLIN4Q96Q06 1357 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 CAND2O75155 1236 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 SLCO1A2P46721 670 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 JAM2P57087 298 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 ICA1Q05084 483 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 FBXO11Q86XK2 927 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 SLC20A1Q8WUM9 679 aa10.89□□□□□ -0.67
LIG3-201ENST00000262327 SLC12A6Q9UHW9 1150 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms