RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CTNNA2P26232 953 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 DGKDQ16760 1214 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 SH3D19Q5HYK7 790 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 ARMCX2Q7L311 632 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 FAM133AQ8N9E0 248 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 CAPZA3Q96KX2 299 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 MMTAG2Q9BU76 263 aaKnown RBP12.59□□□□□ -0.39
VPS4A-201ENST00000254950 EDEM3Q9BZQ6 932 aa12.59□□□□□ -0.39
VPS4A-201ENST00000254950 AGO2Q9UKV8 859 aaKnown RBP12.59□□□□□ -0.39
VPS4A-201ENST00000254950 TTC26A0AVF1 554 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 SOWAHDA6NJG2 315 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 SLC26A2P50443 739 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 TUBB4BP68371 445 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 NCAPHQ15003 741 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 KIAA0753Q2KHM9 967 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 SHCBP1Q8NEM2 672 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 BBXQ8WY36 941 aaPredicted RBP12.58□□□□□ -0.4
VPS4A-201ENST00000254950 SENP7Q9BQF6 1050 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 MKNK1Q9BUB5 465 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 VTA1Q9NP79 307 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 ABHD10Q9NUJ1 306 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 A0A0G2JLL6 359 aaPredicted RBP12.58□□□□□ -0.4
VPS4A-201ENST00000254950 M0R2N6 131 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 SPOPO43791 374 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 SERPING1P05155 500 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 TRIM49P0CI25 452 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 TRIM49CP0CI26 452 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 SCP2P22307 547 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 PRRT2Q7Z6L0 340 aaPredicted RBP12.58□□□□□ -0.4
VPS4A-201ENST00000254950 GPD1LQ8N335 351 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 CLEC4DQ8WXI8 215 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 RPS6KC1Q96S38 1066 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 OLFML3Q9NRN5 406 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.58□□□□□ -0.4
VPS4A-201ENST00000254950 HSPBP1Q9NZL4 362 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 GFPT2O94808 682 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 PRKCBP05771 671 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 EIF4A3P38919 411 aaKnown RBP12.58□□□□□ -0.4
VPS4A-201ENST00000254950 SNRPFP62306 86 aaKnown RBP12.58□□□□□ -0.4
VPS4A-201ENST00000254950 SMC1BQ8NDV3 1235 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 TRIM58Q8NG06 486 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 L3MBTL3Q96JM7 780 aaPredicted RBP12.58□□□□□ -0.4
VPS4A-201ENST00000254950 KATNAL1Q9BW62 490 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 GCOM2Q9BZD3 368 aaPredicted RBP12.58□□□□□ -0.4
VPS4A-201ENST00000254950 NMRK2Q9NPI5 230 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 GPRC5CQ9NQ84 441 aa12.58□□□□□ -0.4
VPS4A-201ENST00000254950 NDUFA10O95299 355 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 ABCB4P21439 1286 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 MAP2K1Q02750 393 aaPredicted RBP12.57□□□□□ -0.4
VPS4A-201ENST00000254950 PDCL2Q8N4E4 241 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 GOLGA1Q92805 767 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 PPP1R13BQ96KQ4 1090 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 MMS19Q96T76 1030 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 ABHD16BQ9H3Z7 469 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 RNF216Q9NWF9 866 aaPredicted RBP12.57□□□□□ -0.4
VPS4A-201ENST00000254950 PARP2Q9UGN5 583 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 ZNF214Q9UL59 606 aaPredicted RBP12.57□□□□□ -0.4
VPS4A-201ENST00000254950 TLR3O15455 904 aaKnown RBP12.57□□□□□ -0.4
VPS4A-201ENST00000254950 SNX16P57768 344 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 NFX1Q12986 1120 aaKnown RBP12.57□□□□□ -0.4
VPS4A-201ENST00000254950 INPP4AQ96PE3 977 aaPredicted RBP12.57□□□□□ -0.4
VPS4A-201ENST00000254950 DNAJC12Q9UKB3 198 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 MYH1P12882 1939 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 DYNC1I1O14576 645 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 ADAMTS3O15072 1205 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 GJC1P36383 396 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 LY6KQ17RY6 165 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 TAF3Q5VWG9 929 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 KRT39Q6A163 491 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 SYCE1Q8N0S2 351 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 KIAA0895Q8NCT3 520 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 NHEJ1Q9H9Q4 299 aaPredicted RBP12.57□□□□□ -0.4
VPS4A-201ENST00000254950 PCDHB4Q9Y5E5 795 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 FRMPD4Q14CM0 1322 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 ITIH6Q6UXX5 1313 aa12.57□□□□□ -0.4
VPS4A-201ENST00000254950 NAV1Q8NEY1 1877 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 ZBTB48P10074 688 aaPredicted RBP12.56□□□□□ -0.4
VPS4A-201ENST00000254950 SLC12A3P55017 1021 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 LACTBP83111 547 aaPredicted RBP12.56□□□□□ -0.4
VPS4A-201ENST00000254950 CDC42EP1Q00587 391 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 LRRC71Q8N4P6 559 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 SCFD1Q8WVM8 642 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 HSD17B14Q9BPX1 270 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 TSKSQ9UJT2 592 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 BTBD19C9JJ37 291 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 ZSCAN20P17040 1043 aaPredicted RBP12.56□□□□□ -0.4
VPS4A-201ENST00000254950 CDR1P51861 262 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 ANKRD23Q86SG2 305 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 KSR1Q8IVT5 923 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 SEMA6BQ9H3T3 888 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 AGPAT3Q9NRZ7 376 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 RBAKQ9NYW8 714 aaPredicted RBP12.56□□□□□ -0.4
VPS4A-201ENST00000254950 MYO1AQ9UBC5 1043 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 EMSYQ7Z589 1322 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 RRN3P2A6NIE6 340 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 UBA1P22314 1058 aaKnown RBP12.56□□□□□ -0.4
VPS4A-201ENST00000254950 TNNC1P63316 161 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 MAP3K10Q02779 954 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 SPRYD7Q5W111 196 aa12.56□□□□□ -0.4
VPS4A-201ENST00000254950 EFCAB12Q6NXP0 572 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms