RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 PPP1R9AQ9ULJ8 1098 aa20.31■□□□□ 0.84
CPSF3-201ENST00000238112 EXOC3O60645 756 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 ENTPD3O75355 529 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 FLT3P36888 993 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 UBXN2AP68543 259 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 ARHGAP44Q17R89 818 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 TMC3Q7Z5M5 1100 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 OTUD6BQ8N6M0 293 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 SEC14L1Q92503 715 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 WDR11Q9BZH6 1224 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 GPR88Q9GZN0 384 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 RAB17Q9H0T7 212 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 ARHGEF10LQ9HCE6 1279 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 SYNPO2Q9UMS6 1093 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 DAAM1Q9Y4D1 1078 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 IGSF9BQ9UPX0 1349 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 GOLGA6L10A0A0M3HER8 536 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 E7EVH7 732 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 DDX3YO15523 660 aaKnown RBP20.3■□□□□ 0.84
CPSF3-201ENST00000238112 TRIM37O94972 964 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 SEC24CP53992 1094 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 PPATQ06203 517 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 ODF2Q5BJF6 829 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 CCDC174Q6PII3 467 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 MYCBPAPQ8TBZ2 947 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 CCT8L2Q96SF2 557 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 ZNF577Q9BSK1 485 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 SYT11Q9BT88 431 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 AFF2P51816 1311 aa20.3■□□□□ 0.84
CPSF3-201ENST00000238112 ATRNL1Q5VV63 1379 aa20.29■□□□□ 0.84
CPSF3-201ENST00000238112 SRRM3A6NNA2 597 aaPredicted RBP20.29■□□□□ 0.84
CPSF3-201ENST00000238112 MYO1FO00160 1098 aa20.29■□□□□ 0.84
CPSF3-201ENST00000238112 DHX9Q08211 1270 aaKnown RBP20.29■□□□□ 0.84
CPSF3-201ENST00000238112 BFSP1Q12934 665 aa20.29■□□□□ 0.84
CPSF3-201ENST00000238112 PPP2R5EQ16537 467 aa20.29■□□□□ 0.84
CPSF3-201ENST00000238112 CEP55Q53EZ4 464 aa20.29■□□□□ 0.84
CPSF3-201ENST00000238112 CARD9Q9H257 536 aa20.29■□□□□ 0.84
CPSF3-201ENST00000238112 MEFVO15553 781 aaPredicted RBP20.28■□□□□ 0.84
CPSF3-201ENST00000238112 FAM107AO95990 144 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 RFX1P22670 979 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 ECE1P42892 770 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 PLS1Q14651 629 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 RRP1BQ14684 758 aaKnown RBP20.28■□□□□ 0.84
CPSF3-201ENST00000238112 KCTD19Q17RG1 926 aaPredicted RBP20.28■□□□□ 0.84
CPSF3-201ENST00000238112 ARHGEF26Q96DR7 871 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 PAGR1Q9BTK6 254 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 THAP2Q9H0W7 228 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 ARHGEF35A5YM69 484 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 ANKRD62A6NC57 917 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 PTENP60484 403 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 AGBL2Q5U5Z8 902 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 DCAF12L1Q5VU92 463 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 RDH13Q8NBN7 331 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 TRIM51Q9BSJ1 452 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 TRIM31Q9BZY9 425 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 UNC45AQ9H3U1 944 aa20.28■□□□□ 0.84
CPSF3-201ENST00000238112 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.28■□□□□ 0.84
CPSF3-201ENST00000238112 PPANQ9NQ55 473 aaKnown RBP20.28■□□□□ 0.84
CPSF3-201ENST00000238112 WRAP73Q9P2S5 460 aaPredicted RBP20.28■□□□□ 0.84
CPSF3-201ENST00000238112 TRPC5Q9UL62 973 aaPredicted RBP20.28■□□□□ 0.84
CPSF3-201ENST00000238112 FAM170AA1A519 330 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 LRRN2O75325 713 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 BCRP11274 1271 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 KRT13P13646 458 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 DR1Q01658 176 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 POU5F1Q01860 360 aaKnown RBP20.27■□□□□ 0.84
CPSF3-201ENST00000238112 CLUL1Q15846 466 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 HOOK2Q96ED9 719 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 FMO2Q99518 471 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 LXNQ9BS40 222 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 GOPCQ9HD26 462 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 TAS2R14Q9NYV8 317 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 GUCY2CP25092 1073 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 SETQ01105 290 aaPredicted RBP20.27■□□□□ 0.84
CPSF3-201ENST00000238112 KIF22Q14807 665 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 CC2D2BQ6DHV5 1058 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 ADAT2Q7Z6V5 191 aaKnown RBP20.27■□□□□ 0.84
CPSF3-201ENST00000238112 SLC9A9Q8IVB4 645 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 TEKT3Q9BXF9 490 aa20.27■□□□□ 0.84
CPSF3-201ENST00000238112 MRPL11Q9Y3B7 192 aaKnown RBP20.27■□□□□ 0.84
CPSF3-201ENST00000238112 HIP1RO75146 1068 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 MMP10P09238 476 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 VIL1P09327 827 aaKnown RBP20.26■□□□□ 0.83
CPSF3-201ENST00000238112 IFFO1Q0D2I5 559 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 CETN1Q12798 172 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 KRT71Q3SY84 523 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 PHLDB3Q6NSJ2 640 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 RHOT2Q8IXI1 618 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 NR2E1Q9Y466 385 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 K7ENM7 598 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 FOXN3O00409 490 aaPredicted RBP20.26■□□□□ 0.83
CPSF3-201ENST00000238112 HMGB2P26583 209 aaKnown RBP20.26■□□□□ 0.83
CPSF3-201ENST00000238112 PPP2R2AP63151 447 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 BANK1Q8NDB2 785 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 AGPAT1Q99943 283 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 SLC12A6Q9UHW9 1150 aa20.26■□□□□ 0.83
CPSF3-201ENST00000238112 HERC5Q9UII4 1024 aaKnown RBP20.26■□□□□ 0.83
CPSF3-201ENST00000238112 NOVA2Q9UNW9 492 aaKnown RBP20.26■□□□□ 0.83
CPSF3-201ENST00000238112 ARP10275 920 aa20.25■□□□□ 0.83
CPSF3-201ENST00000238112 ZNF211Q13398 564 aaPredicted RBP20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms