RNA–Protein interactions for RNA: ENST00000223084.7

LSM5-201, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 1,295 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-201ENST00000223084 DSC3Q14574 896 aa14.1□□□□□ -0.15
LSM5-201ENST00000223084 FOXD4L6Q3SYB3 417 aaPredicted RBP14.1□□□□□ -0.15
LSM5-201ENST00000223084 ODR4Q5SWX8 454 aa14.1□□□□□ -0.15
LSM5-201ENST00000223084 FOXD4L3Q6VB84 417 aaPredicted RBP14.1□□□□□ -0.15
LSM5-201ENST00000223084 ZNF410Q86VK4 478 aa14.1□□□□□ -0.15
LSM5-201ENST00000223084 RNF149Q8NC42 400 aa14.1□□□□□ -0.15
LSM5-201ENST00000223084 CDX2Q99626 313 aaPredicted RBP14.1□□□□□ -0.15
LSM5-201ENST00000223084 POLR3FQ9H1D9 316 aaPredicted RBP14.1□□□□□ -0.15
LSM5-201ENST00000223084 BHMT2Q9H2M3 363 aa14.1□□□□□ -0.15
LSM5-201ENST00000223084 MINDY3Q9H8M7 445 aa14.1□□□□□ -0.15
LSM5-201ENST00000223084 TFIP11Q9UBB9 837 aaKnown RBP14.1□□□□□ -0.15
LSM5-201ENST00000223084 STK24Q9Y6E0 443 aa14.1□□□□□ -0.15
LSM5-201ENST00000223084 CHD9Q3L8U1 2897 aa14.1□□□□□ -0.15
LSM5-201ENST00000223084 ASAP2O43150 1006 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 CYP11B2P19099 503 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 GLRA2P23416 452 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 SPECC1Q5M775 1068 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 FAM102BQ5T8I3 360 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 CABP7Q86V35 215 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 MYLIPQ8WY64 445 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 CLIC6Q96NY7 704 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 YME1L1Q96TA2 773 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 PRDM12Q9H4Q4 367 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 RGS18Q9NS28 235 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 DNM3Q9UQ16 869 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 INSL6Q9Y581 213 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 MYH15Q9Y2K3 1946 aa14.09□□□□□ -0.15
LSM5-201ENST00000223084 LINC01553A4QN01 128 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 EPOPA6NHQ4 379 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 C9IYK1 514 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 RFXAPO00287 272 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 EYA4O95677 639 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 F13A1P00488 732 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 SARSP49591 514 aaKnown RBP14.08□□□□□ -0.16
LSM5-201ENST00000223084 GATMP50440 423 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 CAPSQ13938 189 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 MXD4Q14582 209 aaPredicted RBP14.08□□□□□ -0.16
LSM5-201ENST00000223084 HYIQ5T013 277 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 SLC24A5Q71RS6 500 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 CATSPER4Q7RTX7 472 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 CRIPAKQ8N1N5 446 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 MCPH1Q8NEM0 835 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 BSNDQ8WZ55 320 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 CSRNP2Q9H175 543 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 FBXO2Q9UK22 296 aaPredicted RBP14.08□□□□□ -0.16
LSM5-201ENST00000223084 CHD7Q9P2D1 2997 aa14.08□□□□□ -0.16
LSM5-201ENST00000223084 SSBP05455 408 aaKnown RBP eCLIP14.07□□□□□ -0.16
LSM5-201ENST00000223084 ZSCAN20P17040 1043 aaPredicted RBP14.07□□□□□ -0.16
LSM5-201ENST00000223084 SFPQP23246 707 aaKnown RBP eCLIP14.07□□□□□ -0.16
LSM5-201ENST00000223084 LONP1P36776 959 aaKnown RBP14.07□□□□□ -0.16
LSM5-201ENST00000223084 UBA7P41226 1012 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 PTENP60484 403 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 SLC39A14Q15043 492 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 TMEM119Q4V9L6 283 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 USP49Q70CQ1 688 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 SRGAP1Q7Z6B7 1085 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 NPAS4Q8IUM7 802 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 SP7Q8TDD2 431 aaPredicted RBP14.07□□□□□ -0.16
LSM5-201ENST00000223084 LRRC15Q8TF66 581 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 ARNTL2Q8WYA1 636 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 EPSTI1Q96J88 318 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 CDK5RAP3Q96JB5 506 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 AK8Q96MA6 479 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 RUSC1Q9BVN2 902 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 INO80BQ9C086 356 aaPredicted RBP14.07□□□□□ -0.16
LSM5-201ENST00000223084 C1orf112Q9NSG2 853 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 DAXXQ9UER7 740 aaPredicted RBP14.07□□□□□ -0.16
LSM5-201ENST00000223084 MTUS1Q9ULD2 1270 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 LRFN2Q9ULH4 789 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 PCDHB7Q9Y5E2 793 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 COL6A3P12111 3177 aa14.07□□□□□ -0.16
LSM5-201ENST00000223084 LRRIQ4A6NIV6 560 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 INO80B-WBP1J3KQ70 363 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 DGKIO75912 1065 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 STAG3L1P0CL83 205 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 PHKA2P46019 1235 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 NASPP49321 788 aaPredicted RBP14.06□□□□□ -0.16
LSM5-201ENST00000223084 FAM189BP81408 668 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 TFDP1Q14186 410 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 BECN1Q14457 450 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 KARSQ15046 597 aaKnown RBP14.06□□□□□ -0.16
LSM5-201ENST00000223084 PAN2Q504Q3 1202 aaKnown RBP14.06□□□□□ -0.16
LSM5-201ENST00000223084 RINT1Q6NUQ1 792 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 LINC00301Q8NCQ3 95 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 ZNF689Q96CS4 500 aaPredicted RBP14.06□□□□□ -0.16
LSM5-201ENST00000223084 ZNF396Q96N95 335 aaPredicted RBP14.06□□□□□ -0.16
LSM5-201ENST00000223084 C17orf80Q9BSJ5 609 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 NT5C3AQ9H0P0 336 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 RC3H2Q9HBD1 1191 aaKnown RBP14.06□□□□□ -0.16
LSM5-201ENST00000223084 PIN4Q9Y237 131 aaKnown RBP14.06□□□□□ -0.16
LSM5-201ENST00000223084 ZDHHC9Q9Y397 364 aa14.06□□□□□ -0.16
LSM5-201ENST00000223084 SRPRBQ9Y5M8 271 aaKnown RBP14.06□□□□□ -0.16
LSM5-201ENST00000223084 COL4A6Q14031 1691 aa14.05□□□□□ -0.16
LSM5-201ENST00000223084 PLA2G4BP0C869 781 aa14.05□□□□□ -0.16
LSM5-201ENST00000223084 FGFR1P11362 822 aa14.05□□□□□ -0.16
LSM5-201ENST00000223084 PDIA4P13667 645 aaKnown RBP14.05□□□□□ -0.16
LSM5-201ENST00000223084 PLCG1P19174 1290 aa14.05□□□□□ -0.16
LSM5-201ENST00000223084 RAD51AP2Q09MP3 1159 aa14.05□□□□□ -0.16
LSM5-201ENST00000223084 ADGRE1Q14246 886 aa14.05□□□□□ -0.16
LSM5-201ENST00000223084 STK38Q15208 465 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms