RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 TTBK2Q6IQ55 1244 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 AGGF1Q8N302 714 aaeCLIP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 ARHGEF1Q92888 912 aaKnown RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 MLXIPQ9HAP2 919 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 CCDC87Q9NVE4 849 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 XDHP47989 1333 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 ZRANB2O95218 330 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 CCT8P50990 548 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 RC3H1Q5TC82 1133 aaKnown RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 ZNF772Q68DY9 489 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 TRIM67Q6ZTA4 783 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 RRM2BQ7LG56 351 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 AATFQ9NY61 560 aaKnown RBP eCLIP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 PRG3Q9Y2Y8 225 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-201ENST00000011700 AKAP12Q02952 1782 aa6.46□□□□□ -1.38
VPS13D-201ENST00000011700 GMNCA6NCL1 334 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 MMS19Q96T76 1030 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 CARD9Q9H257 536 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 STK32BQ9NY57 414 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 RNMTO43148 476 aaKnown RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 IGHDP01880 384 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 PEX19P40855 299 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 C20orf194Q5TEA3 1177 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 PNMA1Q8ND90 353 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 SSH3Q8TE77 659 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 MED14O60244 1454 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 RASA4BC9J798 803 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 ZW10O43264 779 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 RASA4O43374 803 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 TTKP33981 857 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 SERPINB9P50453 376 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 HIC1Q14526 733 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 RNF219Q5W0B1 726 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 CCNJLQ8IV13 435 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 ASAP3Q8TDY4 903 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 VPS50Q96JG6 964 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 CCDC90BQ9GZT6 254 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 TBC1D22BQ9NU19 505 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 VTI1BQ9UEU0 232 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 ATP11BQ9Y2G3 1177 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 NLRP1Q9C000 1473 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 BTBD18B2RXH4 712 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 FMNL1O95466 1100 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 U2AF2P26368 475 aaKnown RBP eCLIP6.45□□□□□ -1.385e-7■■■■□ 26.4
VPS13D-201ENST00000011700 CASP8Q14790 479 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 KRT72Q14CN4 511 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 TRIP4Q15650 581 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 GRAMD1BQ3KR37 738 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 TBC1D1Q86TI0 1168 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 FBXO11Q86XK2 927 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 SNF8Q96H20 258 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 DACH2Q96NX9 599 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 TAF1DQ9H5J8 278 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 CACNA2D2Q9NY47 1150 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 USTQ9Y2C2 406 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 PCDHB4Q9Y5E5 795 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 PLA2R1Q13018 1463 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 ACADSP16219 412 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 PTGDRQ13258 359 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 SNRKQ9NRH2 765 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 ZCCHC11Q5TAX3 1644 aaKnown RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 PPIP5K2O43314 1243 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 HSPA4LO95757 839 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 PSAPP07602 524 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 MUTP22033 750 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 SKP1P63208 163 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 CDR2LQ86X02 465 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 FANCEQ9HB96 536 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 KLRF2D3W0D1 207 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 MYL4P12829 197 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 MFSD14BQ5SR56 506 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 METTL13Q8N6R0 699 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 ZFP69BQ9UJL9 534 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 TM9SF1O15321 606 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 MXI1P50539 228 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 EHHADHQ08426 723 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 ANO4Q32M45 955 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 VSTM4Q8IW00 320 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 FAM227BQ96M60 508 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 RTTNQ86VV8 2226 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 ATP10BO94823 1461 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 TGFBR2P37173 567 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 GUCY2FP51841 1108 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 EIF4A2Q14240 407 aaKnown RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 TJAP1Q5JTD0 557 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 THOC7Q6I9Y2 204 aaKnown RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 UGT3A1Q6NUS8 523 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 SUGP1Q8IWZ8 645 aaKnown RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 ZNF653Q96CK0 615 aa6.45□□□□□ -1.38
VPS13D-201ENST00000011700 MMADHCQ9H3L0 296 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-201ENST00000011700 PRRC2BQ5JSZ5 2229 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 TMEM191CA6NGB0 347 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 SERPINB3P29508 390 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 NUP62P37198 522 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 CUL3Q13618 768 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 LINC00523Q86TU6 105 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 MGARPQ8TDB4 240 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 WARS2Q9UGM6 360 aaKnown RBP6.44□□□□□ -1.38
VPS13D-201ENST00000011700 TBX22Q9Y458 520 aa6.44□□□□□ -1.38
VPS13D-201ENST00000011700 LMO7Q8WWI1 1683 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms