RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MICAL3Q7RTP6 2002 aa4.51□□□□□ -1.69
SCN1A-221ENST00000641996 ZNF777Q9ULD5 760 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-221ENST00000641996 SPTY2D1Q68D10 685 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-221ENST00000641996 APBB1IPQ7Z5R6 666 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-221ENST00000641996 CCER2I3L3R5 266 aa4.51□□□□□ -1.69
SCN1A-221ENST00000641996 PHF14O94880 888 aa4.51□□□□□ -1.69
SCN1A-221ENST00000641996 CCDC34Q96HJ3 373 aa4.51□□□□□ -1.69
SCN1A-221ENST00000641996 SUDS3Q9H7L9 328 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-221ENST00000641996 NRDCO43847 1150 aa4.51□□□□□ -1.69
SCN1A-221ENST00000641996 VTI1AQ96AJ9 217 aa4.5□□□□□ -1.69
SCN1A-221ENST00000641996 PNMA2Q9UL42 364 aa4.5□□□□□ -1.69
SCN1A-221ENST00000641996 RNF216Q9NWF9 866 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-221ENST00000641996 TMTC2Q8N394 836 aa4.5□□□□□ -1.69
SCN1A-221ENST00000641996 PDILTQ8N807 584 aa4.5□□□□□ -1.69
SCN1A-221ENST00000641996 FAM13BQ9NYF5 915 aa4.5□□□□□ -1.69
SCN1A-221ENST00000641996 DYTNA2CJ06 578 aa4.5□□□□□ -1.69
SCN1A-221ENST00000641996 PAIP2Q9BPZ3 127 aaKnown RBP4.5□□□□□ -1.69
SCN1A-221ENST00000641996 BRPF1P55201 1214 aaPredicted RBP4.5□□□□□ -1.69
SCN1A-221ENST00000641996 ZBTB9Q96C00 473 aa4.5□□□□□ -1.69
SCN1A-221ENST00000641996 C1orf115Q9H7X2 142 aa4.5□□□□□ -1.69
SCN1A-221ENST00000641996 HSP90AB3PQ58FF7 597 aa4.49□□□□□ -1.69
SCN1A-221ENST00000641996 ZCRB1Q8TBF4 217 aaKnown RBP4.49□□□□□ -1.69
SCN1A-221ENST00000641996 TERF1P54274 439 aa4.49□□□□□ -1.69
SCN1A-221ENST00000641996 TERF2IPQ9NYB0 399 aa4.49□□□□□ -1.69
SCN1A-221ENST00000641996 CFAP65Q6ZU64 1925 aaKnown RBP4.49□□□□□ -1.69
SCN1A-221ENST00000641996 CHMP4CQ96CF2 233 aa4.49□□□□□ -1.69
SCN1A-221ENST00000641996 WDHD1O75717 1129 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-221ENST00000641996 G3BP2Q9UN86 482 aaKnown RBP4.49□□□□□ -1.69
SCN1A-221ENST00000641996 HMGB1P1B2RPK0 211 aaPredicted RBP4.49□□□□□ -1.69
SCN1A-221ENST00000641996 PAF1Q8N7H5 531 aa4.49□□□□□ -1.69
SCN1A-221ENST00000641996 GPBP1L1Q9HC44 474 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-221ENST00000641996 FRMD4BQ9Y2L6 1034 aa4.48□□□□□ -1.69
SCN1A-221ENST00000641996 GET4Q7L5D6 327 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-221ENST00000641996 PROCA1Q8NCQ7 364 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-221ENST00000641996 TPD52L2O43399 206 aaKnown RBP4.48□□□□□ -1.69
SCN1A-221ENST00000641996 GRIPAP1Q4V328 841 aa4.48□□□□□ -1.69
SCN1A-221ENST00000641996 HIRIP3Q9BW71 556 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-221ENST00000641996 CALD1Q05682 793 aaKnown RBP4.48□□□□□ -1.69
SCN1A-221ENST00000641996 SEMA3FQ13275 785 aa4.48□□□□□ -1.69
SCN1A-221ENST00000641996 CALR3Q96L12 384 aaKnown RBP4.48□□□□□ -1.69
SCN1A-221ENST00000641996 RALBP1Q15311 655 aa4.47□□□□□ -1.69
SCN1A-221ENST00000641996 MAP7D2Q96T17 732 aa4.47□□□□□ -1.69
SCN1A-221ENST00000641996 FOXD4Q12950 439 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-221ENST00000641996 ANKRD13AQ8IZ07 590 aa4.47□□□□□ -1.69
SCN1A-221ENST00000641996 TDO2P48775 406 aa4.47□□□□□ -1.69
SCN1A-221ENST00000641996 RINLQ6ZS11 566 aa4.46□□□□□ -1.69
SCN1A-221ENST00000641996 UPF2Q9HAU5 1272 aaKnown RBP4.46□□□□□ -1.7
SCN1A-221ENST00000641996 STK10O94804 968 aaKnown RBP4.46□□□□□ -1.7
SCN1A-221ENST00000641996 LOC102724159A0A0B4J2E5 919 aa4.46□□□□□ -1.7
SCN1A-221ENST00000641996 TMCO5BA8MYB1 307 aa4.46□□□□□ -1.7
SCN1A-221ENST00000641996 PWP2Q15269 919 aaKnown RBP4.46□□□□□ -1.7
SCN1A-221ENST00000641996 SLC24A3Q9HC58 644 aa4.46□□□□□ -1.7
SCN1A-221ENST00000641996 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.46□□□□□ -1.7
SCN1A-221ENST00000641996 KCNJ4P48050 445 aa4.46□□□□□ -1.7
SCN1A-221ENST00000641996 GOLGA6CA6NDK9 693 aa4.46□□□□□ -1.7
SCN1A-221ENST00000641996 GOLGA6BA6NDN3 693 aa4.46□□□□□ -1.7
SCN1A-221ENST00000641996 GOLGA6DP0CG33 693 aa4.46□□□□□ -1.7
SCN1A-221ENST00000641996 GOLGA6AQ9NYA3 693 aa4.46□□□□□ -1.7
SCN1A-221ENST00000641996 ACRBPQ8NEB7 543 aa4.46□□□□□ -1.7
SCN1A-221ENST00000641996 MFSD4BQ5TF39 518 aa4.45□□□□□ -1.7
SCN1A-221ENST00000641996 MYCBPQ99417 103 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-221ENST00000641996 GTF2A1P52655 376 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-221ENST00000641996 BAZ2BQ9UIF8 2168 aaKnown RBP4.45□□□□□ -1.7
SCN1A-221ENST00000641996 KIAA2012Q0VF49 1180 aa4.45□□□□□ -1.7
SCN1A-221ENST00000641996 PPP4R3BQ5MIZ7 849 aa4.45□□□□□ -1.7
SCN1A-221ENST00000641996 CC2D2BQ6DHV5 1058 aa4.45□□□□□ -1.7
SCN1A-221ENST00000641996 KRI1Q8N9T8 703 aaKnown RBP4.45□□□□□ -1.7
SCN1A-221ENST00000641996 FAM43AQ8N2R8 423 aa4.45□□□□□ -1.7
SCN1A-221ENST00000641996 ZNF830Q96NB3 372 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-221ENST00000641996 CEP89Q96ST8 783 aa4.45□□□□□ -1.7
SCN1A-221ENST00000641996 CHAF1AQ13111 956 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-221ENST00000641996 ATL2Q8NHH9 583 aa4.44□□□□□ -1.7
SCN1A-221ENST00000641996 HTATSF1O43719 755 aaKnown RBP4.44□□□□□ -1.7
SCN1A-221ENST00000641996 GABBR1Q9UBS5 961 aa4.44□□□□□ -1.7
SCN1A-221ENST00000641996 ENOX2Q16206 610 aaKnown RBP4.44□□□□□ -1.7
SCN1A-221ENST00000641996 NPHP1O15259 732 aa4.44□□□□□ -1.7
SCN1A-221ENST00000641996 CA8P35219 290 aa4.44□□□□□ -1.7
SCN1A-221ENST00000641996 RBM28Q9NW13 759 aaKnown RBP4.44□□□□□ -1.7
SCN1A-221ENST00000641996 INF2Q27J81 1249 aa4.44□□□□□ -1.7
SCN1A-221ENST00000641996 CITO14578 2027 aa4.44□□□□□ -1.7
SCN1A-221ENST00000641996 TTC36A6NLP5 189 aa4.44□□□□□ -1.7
SCN1A-221ENST00000641996 NBPF6Q5VWK0 638 aa4.44□□□□□ -1.7
SCN1A-221ENST00000641996 NBPF5PQ86XG9 351 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-221ENST00000641996 NBPF4Q96M43 638 aa4.44□□□□□ -1.7
SCN1A-221ENST00000641996 FAM160A1Q05DH4 1040 aa4.44□□□□□ -1.7
SCN1A-221ENST00000641996 PABPN1Q86U42 306 aaKnown RBP eCLIP4.44□□□□□ -1.7
SCN1A-221ENST00000641996 SF3B2Q13435 895 aaKnown RBP4.44□□□□□ -1.7
SCN1A-221ENST00000641996 H0YHG0 523 aa4.43□□□□□ -1.7
SCN1A-221ENST00000641996 SARNPP82979 210 aaKnown RBP4.43□□□□□ -1.7
SCN1A-221ENST00000641996 HDAC1Q13547 482 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-221ENST00000641996 SKAP1Q86WV1 359 aa4.43□□□□□ -1.7
SCN1A-221ENST00000641996 SH3BGRP55822 239 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-221ENST00000641996 MECOMQ03112 1051 aa4.43□□□□□ -1.7
SCN1A-221ENST00000641996 TRERF1Q96PN7 1200 aa4.43□□□□□ -1.7
SCN1A-221ENST00000641996 LRCH2Q5VUJ6 765 aa4.43□□□□□ -1.7
SCN1A-221ENST00000641996 BIN2Q9UBW5 565 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-221ENST00000641996 ZFYVE27Q5T4F4 411 aa4.43□□□□□ -1.7
SCN1A-221ENST00000641996 TPM2P07951 284 aa4.43□□□□□ -1.7
SCN1A-221ENST00000641996 TOMM22Q9NS69 142 aa4.43□□□□□ -1.7
SCN1A-221ENST00000641996 VGFO15240 615 aaPredicted RBP4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms