RNA–Protein interactions for RNA: ENST00000640501.1

PNKP-231, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 151 nt, Biotype non stop decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-231ENST00000640501 NEO1Q92859 1461 aa11.6□□□□□ -0.55
PNKP-231ENST00000640501 CCER2I3L3R5 266 aa11.6□□□□□ -0.55
PNKP-231ENST00000640501 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.6□□□□□ -0.55
PNKP-231ENST00000640501 ARID4BQ4LE39 1312 aaPredicted RBP11.6□□□□□ -0.55
PNKP-231ENST00000640501 RALGAPBQ86X10 1494 aa11.59□□□□□ -0.55
PNKP-231ENST00000640501 STAC3Q96MF2 364 aa11.59□□□□□ -0.55
PNKP-231ENST00000640501 TET3O43151 1660 aa11.59□□□□□ -0.55
PNKP-231ENST00000640501 DHX29Q7Z478 1369 aaKnown RBP11.56□□□□□ -0.56
PNKP-231ENST00000640501 AFAP1Q8N556 730 aa11.56□□□□□ -0.56
PNKP-231ENST00000640501 HECW2Q9P2P5 1572 aa11.56□□□□□ -0.56
PNKP-231ENST00000640501 PRDM15P57071 1507 aaPredicted RBP11.55□□□□□ -0.56
PNKP-231ENST00000640501 SPHKAPQ2M3C7 1700 aa11.55□□□□□ -0.56
PNKP-231ENST00000640501 KDM5CP41229 1560 aa11.55□□□□□ -0.56
PNKP-231ENST00000640501 ZNF326Q5BKZ1 582 aaKnown RBP11.55□□□□□ -0.56
PNKP-231ENST00000640501 HIRIP3Q9BW71 556 aaPredicted RBP11.55□□□□□ -0.56
PNKP-231ENST00000640501 MLH3Q9UHC1 1453 aa11.55□□□□□ -0.56
PNKP-231ENST00000640501 TRPM2O94759 1503 aa11.55□□□□□ -0.56
PNKP-231ENST00000640501 ROCK2O75116 1388 aaKnown RBP11.54□□□□□ -0.56
PNKP-231ENST00000640501 USP47Q96K76 1375 aa11.54□□□□□ -0.56
PNKP-231ENST00000640501 GLI2P10070 1586 aa11.54□□□□□ -0.56
PNKP-231ENST00000640501 POGZQ7Z3K3 1410 aa11.54□□□□□ -0.56
PNKP-231ENST00000640501 CNTLNQ9NXG0 1405 aa11.54□□□□□ -0.56
PNKP-231ENST00000640501 LAMC1P11047 1609 aa11.54□□□□□ -0.56
PNKP-231ENST00000640501 NBPF8Q3BBV2 869 aa11.54□□□□□ -0.56
PNKP-231ENST00000640501 DCAF11Q8TEB1 546 aa11.54□□□□□ -0.56
PNKP-231ENST00000640501 CEP152O94986 1710 aa11.54□□□□□ -0.56
PNKP-231ENST00000640501 KIDINS220Q9ULH0 1771 aa11.54□□□□□ -0.56
PNKP-231ENST00000640501 NEURL4Q96JN8 1562 aa11.54□□□□□ -0.56
PNKP-231ENST00000640501 CCDC7Q96M83 1385 aa11.54□□□□□ -0.56
PNKP-231ENST00000640501 SPATA31E1Q6ZUB1 1445 aa11.53□□□□□ -0.56
PNKP-231ENST00000640501 E9PCH4 1651 aa11.53□□□□□ -0.56
PNKP-231ENST00000640501 VWDEQ8N2E2 1590 aa11.53□□□□□ -0.56
PNKP-231ENST00000640501 MAP3K4Q9Y6R4 1608 aa11.53□□□□□ -0.56
PNKP-231ENST00000640501 BCORL1Q5H9F3 1711 aa11.52□□□□□ -0.56
PNKP-231ENST00000640501 A2MP01023 1474 aa11.52□□□□□ -0.56
PNKP-231ENST00000640501 CARD11Q9BXL7 1154 aa11.52□□□□□ -0.57
PNKP-231ENST00000640501 WASHC2AQ641Q2 1341 aa11.52□□□□□ -0.57
PNKP-231ENST00000640501 TRPM1Q7Z4N2 1603 aa11.52□□□□□ -0.57
PNKP-231ENST00000640501 RNF17Q9BXT8 1623 aaKnown RBP11.52□□□□□ -0.57
PNKP-231ENST00000640501 RIMBP3CA6NJZ7 1639 aa11.51□□□□□ -0.57
PNKP-231ENST00000640501 RIMBP3BA6NNM3 1639 aa11.51□□□□□ -0.57
PNKP-231ENST00000640501 RIMBP3Q9UFD9 1639 aa11.51□□□□□ -0.57
PNKP-231ENST00000640501 LMTK2Q8IWU2 1503 aa11.5□□□□□ -0.57
PNKP-231ENST00000640501 KIF3BO15066 747 aa11.5□□□□□ -0.57
PNKP-231ENST00000640501 PRAG1Q86YV5 1406 aa11.5□□□□□ -0.57
PNKP-231ENST00000640501 KDM2AQ9Y2K7 1162 aa11.49□□□□□ -0.57
PNKP-231ENST00000640501 PTPRTO14522 1441 aa11.49□□□□□ -0.57
PNKP-231ENST00000640501 PLA2R1Q13018 1463 aa11.49□□□□□ -0.57
PNKP-231ENST00000640501 EFCAB6Q5THR3 1501 aa11.49□□□□□ -0.57
PNKP-231ENST00000640501 KIF1BO60333 1816 aa11.48□□□□□ -0.57
PNKP-231ENST00000640501 ZC3H13Q5T200 1668 aaKnown RBP11.47□□□□□ -0.57
PNKP-231ENST00000640501 SLC24A1O60721 1099 aa11.47□□□□□ -0.57
PNKP-231ENST00000640501 GPRASP1Q5JY77 1395 aa11.46□□□□□ -0.57
PNKP-231ENST00000640501 KIF7Q2M1P5 1343 aa11.46□□□□□ -0.57
PNKP-231ENST00000640501 SCAF1Q9H7N4 1312 aaKnown RBP11.46□□□□□ -0.57
PNKP-231ENST00000640501 MROH1Q8NDA8 1641 aa11.46□□□□□ -0.58
PNKP-231ENST00000640501 RGL3Q3MIN7 710 aa11.45□□□□□ -0.58
PNKP-231ENST00000640501 CYB5RLQ6IPT4 315 aa11.45□□□□□ -0.58
PNKP-231ENST00000640501 GTF3C3Q9Y5Q9 886 aa11.45□□□□□ -0.58
PNKP-231ENST00000640501 RICTORQ6R327 1708 aa11.45□□□□□ -0.58
PNKP-231ENST00000640501 KIAA1210Q9ULL0 1709 aa11.45□□□□□ -0.58
PNKP-231ENST00000640501 KTN1Q86UP2 1357 aaKnown RBP11.44□□□□□ -0.58
PNKP-231ENST00000640501 CLTCL1P53675 1640 aa11.44□□□□□ -0.58
PNKP-231ENST00000640501 ABCA6Q8N139 1617 aa11.44□□□□□ -0.58
PNKP-231ENST00000640501 DIP2BQ9P265 1576 aa11.43□□□□□ -0.58
PNKP-231ENST00000640501 EIF3AQ14152 1382 aaKnown RBP11.42□□□□□ -0.58
PNKP-231ENST00000640501 MADDQ8WXG6 1647 aa11.42□□□□□ -0.58
PNKP-231ENST00000640501 PPRC1Q5VV67 1664 aaKnown RBP11.42□□□□□ -0.58
PNKP-231ENST00000640501 DIP2CQ9Y2E4 1556 aa11.41□□□□□ -0.58
PNKP-231ENST00000640501 ZMYM4Q5VZL5 1548 aa11.41□□□□□ -0.58
PNKP-231ENST00000640501 MYOM2P54296 1465 aa11.41□□□□□ -0.58
PNKP-231ENST00000640501 CDCA8Q53HL2 280 aa11.41□□□□□ -0.58
PNKP-231ENST00000640501 CAMSAP1Q5T5Y3 1602 aa11.4□□□□□ -0.58
PNKP-231ENST00000640501 FRMPD1Q5SYB0 1578 aa11.4□□□□□ -0.58
PNKP-231ENST00000640501 WASHC2CQ9Y4E1 1318 aa11.39□□□□□ -0.59
PNKP-231ENST00000640501 ST20-MTHFSA0A0A6YYL1 179 aa11.39□□□□□ -0.59
PNKP-231ENST00000640501 TMF1P82094 1093 aa11.39□□□□□ -0.59
PNKP-231ENST00000640501 PRKRIP1Q9H875 184 aaPredicted RBP11.39□□□□□ -0.59
PNKP-231ENST00000640501 C11orf95C9JLR9 678 aaPredicted RBP11.38□□□□□ -0.59
PNKP-231ENST00000640501 FAM69CQ0P6D2 419 aa11.38□□□□□ -0.59
PNKP-231ENST00000640501 PELP1Q8IZL8 1130 aaKnown RBP11.38□□□□□ -0.59
PNKP-231ENST00000640501 POLR3GLQ9BT43 218 aa11.38□□□□□ -0.59
PNKP-231ENST00000640501 ABCC3O15438 1527 aa11.38□□□□□ -0.59
PNKP-231ENST00000640501 IFT172Q9UG01 1749 aa11.38□□□□□ -0.59
PNKP-231ENST00000640501 RPGRIP1LQ68CZ1 1315 aa11.37□□□□□ -0.59
PNKP-231ENST00000640501 REREQ9P2R6 1566 aa11.37□□□□□ -0.59
PNKP-231ENST00000640501 IQGAP1P46940 1657 aa11.37□□□□□ -0.59
PNKP-231ENST00000640501 ARHGAP31Q2M1Z3 1444 aa11.37□□□□□ -0.59
PNKP-231ENST00000640501 GGT6Q6P531 493 aa11.37□□□□□ -0.59
PNKP-231ENST00000640501 SCAF11Q99590 1463 aaKnown RBP11.37□□□□□ -0.59
PNKP-231ENST00000640501 PPP6R1Q9UPN7 881 aa11.36□□□□□ -0.59
PNKP-231ENST00000640501 COL17A1Q9UMD9 1497 aaPredicted RBP11.36□□□□□ -0.59
PNKP-231ENST00000640501 ADGRB3O60242 1522 aa11.35□□□□□ -0.59
PNKP-231ENST00000640501 RAPGEF3O95398 923 aa11.35□□□□□ -0.59
PNKP-231ENST00000640501 RALBP1Q15311 655 aa11.35□□□□□ -0.59
PNKP-231ENST00000640501 MRS2Q9HD23 443 aa11.34□□□□□ -0.59
PNKP-231ENST00000640501 NPATQ14207 1427 aa11.34□□□□□ -0.59
PNKP-231ENST00000640501 TSPOAP1O95153 1857 aa11.34□□□□□ -0.59
PNKP-231ENST00000640501 NEFLP07196 543 aa11.33□□□□□ -0.6
PNKP-231ENST00000640501 AGLP35573 1532 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms