RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 PLA2R1Q13018 1463 aa21.88■■□□□ 1.09
CLN3-251ENST00000636853 CCDC144AA2RUR9 1427 aa21.88■■□□□ 1.09
CLN3-251ENST00000636853 UHRF1BP1Q6BDS2 1440 aa21.88■■□□□ 1.09
CLN3-251ENST00000636853 DCAF11Q8TEB1 546 aa21.87■■□□□ 1.09
CLN3-251ENST00000636853 CCDC7Q96M83 1385 aa21.87■■□□□ 1.09
CLN3-251ENST00000636853 CCER2I3L3R5 266 aa21.86■■□□□ 1.09
CLN3-251ENST00000636853 MYT1LQ9UL68 1186 aa21.85■■□□□ 1.09
CLN3-251ENST00000636853 ATP7AQ04656 1500 aa21.84■■□□□ 1.09
CLN3-251ENST00000636853 USP47Q96K76 1375 aa21.84■■□□□ 1.09
CLN3-251ENST00000636853 INO80Q9ULG1 1556 aaPredicted RBP21.84■■□□□ 1.09
CLN3-251ENST00000636853 RALGAPBQ86X10 1494 aa21.82■■□□□ 1.08
CLN3-251ENST00000636853 RGL3Q3MIN7 710 aa21.82■■□□□ 1.08
CLN3-251ENST00000636853 KIF7Q2M1P5 1343 aa21.81■■□□□ 1.08
CLN3-251ENST00000636853 CNTLNQ9NXG0 1405 aa21.81■■□□□ 1.08
CLN3-251ENST00000636853 KDM5CP41229 1560 aa21.8■■□□□ 1.08
CLN3-251ENST00000636853 POLR1AO95602 1720 aaPredicted RBP21.8■■□□□ 1.08
CLN3-251ENST00000636853 CD109Q6YHK3 1445 aa21.79■■□□□ 1.08
CLN3-251ENST00000636853 CARD11Q9BXL7 1154 aa21.78■■□□□ 1.08
CLN3-251ENST00000636853 BCORL1Q5H9F3 1711 aa21.77■■□□□ 1.08
CLN3-251ENST00000636853 ATP10AO60312 1499 aa21.76■■□□□ 1.07
CLN3-251ENST00000636853 DEPDC5O75140 1603 aa21.75■■□□□ 1.07
CLN3-251ENST00000636853 KIF3BO15066 747 aa21.75■■□□□ 1.07
CLN3-251ENST00000636853 E9PCH4 1651 aa21.75■■□□□ 1.07
CLN3-251ENST00000636853 A2MP01023 1474 aa21.74■■□□□ 1.07
CLN3-251ENST00000636853 KIDINS220Q9ULH0 1771 aa21.73■■□□□ 1.07
CLN3-251ENST00000636853 DHX29Q7Z478 1369 aaKnown RBP21.73■■□□□ 1.07
CLN3-251ENST00000636853 PRAG1Q86YV5 1406 aa21.73■■□□□ 1.07
CLN3-251ENST00000636853 ZNF518AQ6AHZ1 1483 aa21.72■■□□□ 1.07
CLN3-251ENST00000636853 ROCK2O75116 1388 aaKnown RBP21.72■■□□□ 1.07
CLN3-251ENST00000636853 POLR3GLQ9BT43 218 aa21.72■■□□□ 1.07
CLN3-251ENST00000636853 TRPM1Q7Z4N2 1603 aa21.7■■□□□ 1.06
CLN3-251ENST00000636853 CFAP74Q9C0B2 1584 aa21.7■■□□□ 1.06
CLN3-251ENST00000636853 CYB5RLQ6IPT4 315 aa21.69■■□□□ 1.06
CLN3-251ENST00000636853 KANK1Q14678 1352 aa21.69■■□□□ 1.06
CLN3-251ENST00000636853 EIF2AK4Q9P2K8 1649 aaKnown RBP21.68■■□□□ 1.06
CLN3-251ENST00000636853 ST20-MTHFSA0A0A6YYL1 179 aa21.68■■□□□ 1.06
CLN3-251ENST00000636853 TET3O43151 1660 aa21.67■■□□□ 1.06
CLN3-251ENST00000636853 VWDEQ8N2E2 1590 aa21.67■■□□□ 1.06
CLN3-251ENST00000636853 NBPF1Q3BBV0 1214 aa21.67■■□□□ 1.06
CLN3-251ENST00000636853 POGZQ7Z3K3 1410 aa21.66■■□□□ 1.06
CLN3-251ENST00000636853 MROH1Q8NDA8 1641 aa21.66■■□□□ 1.06
CLN3-251ENST00000636853 SPHKAPQ2M3C7 1700 aa21.66■■□□□ 1.06
CLN3-251ENST00000636853 PRKRIP1Q9H875 184 aaPredicted RBP21.65■■□□□ 1.06
CLN3-251ENST00000636853 TRPM2O94759 1503 aa21.65■■□□□ 1.06
CLN3-251ENST00000636853 PRDM15P57071 1507 aaPredicted RBP21.64■■□□□ 1.06
CLN3-251ENST00000636853 PTPRTO14522 1441 aa21.63■■□□□ 1.05
CLN3-251ENST00000636853 ARID4BQ4LE39 1312 aaPredicted RBP21.61■■□□□ 1.05
CLN3-251ENST00000636853 CLTCL1P53675 1640 aa21.61■■□□□ 1.05
CLN3-251ENST00000636853 CCDC184Q52MB2 194 aa21.61■■□□□ 1.05
CLN3-251ENST00000636853 MLH3Q9UHC1 1453 aa21.6■■□□□ 1.05
CLN3-251ENST00000636853 CEP152O94986 1710 aa21.59■■□□□ 1.05
CLN3-251ENST00000636853 RAPGEF3O95398 923 aa21.59■■□□□ 1.05
CLN3-251ENST00000636853 HECW2Q9P2P5 1572 aa21.59■■□□□ 1.05
CLN3-251ENST00000636853 RIMBP3CA6NJZ7 1639 aa21.59■■□□□ 1.05
CLN3-251ENST00000636853 RIMBP3BA6NNM3 1639 aa21.59■■□□□ 1.05
CLN3-251ENST00000636853 RIMBP3Q9UFD9 1639 aa21.59■■□□□ 1.05
CLN3-251ENST00000636853 GPRASP1Q5JY77 1395 aa21.58■■□□□ 1.05
CLN3-251ENST00000636853 NEO1Q92859 1461 aa21.58■■□□□ 1.04
CLN3-251ENST00000636853 FRMPD1Q5SYB0 1578 aa21.56■■□□□ 1.04
CLN3-251ENST00000636853 CNGB1Q14028 1251 aaPredicted RBP21.56■■□□□ 1.04
CLN3-251ENST00000636853 ABCA6Q8N139 1617 aa21.55■■□□□ 1.04
CLN3-251ENST00000636853 LAMC1P11047 1609 aa21.54■■□□□ 1.04
CLN3-251ENST00000636853 EFCAB6Q5THR3 1501 aa21.54■■□□□ 1.04
CLN3-251ENST00000636853 RNF17Q9BXT8 1623 aaKnown RBP21.54■■□□□ 1.04
CLN3-251ENST00000636853 MAP3K4Q9Y6R4 1608 aa21.54■■□□□ 1.04
CLN3-251ENST00000636853 PPRC1Q5VV67 1664 aaKnown RBP21.53■■□□□ 1.04
CLN3-251ENST00000636853 UGGT1Q9NYU2 1555 aa21.53■■□□□ 1.04
CLN3-251ENST00000636853 GGT6Q6P531 493 aa21.53■■□□□ 1.04
CLN3-251ENST00000636853 MADDQ8WXG6 1647 aa21.52■■□□□ 1.03
CLN3-251ENST00000636853 MRS2Q9HD23 443 aa21.52■■□□□ 1.03
CLN3-251ENST00000636853 HNRNPUQ00839 825 aaKnown RBP eCLIP21.5■■□□□ 1.03
CLN3-251ENST00000636853 LMTK2Q8IWU2 1503 aa21.5■■□□□ 1.03
CLN3-251ENST00000636853 RICTORQ6R327 1708 aa21.47■■□□□ 1.03
CLN3-251ENST00000636853 TESK2Q96S53 571 aa21.47■■□□□ 1.03
CLN3-251ENST00000636853 GLI2P10070 1586 aa21.47■■□□□ 1.03
CLN3-251ENST00000636853 CFAP65Q6ZU64 1925 aaKnown RBP21.47■■□□□ 1.03
CLN3-251ENST00000636853 FAM9BQ8IZU0 186 aa21.46■■□□□ 1.03
CLN3-251ENST00000636853 FAM69CQ0P6D2 419 aa21.46■■□□□ 1.03
CLN3-251ENST00000636853 DIP2CQ9Y2E4 1556 aa21.45■■□□□ 1.02
CLN3-251ENST00000636853 KIF1BO60333 1816 aa21.45■■□□□ 1.02
CLN3-251ENST00000636853 STAC3Q96MF2 364 aa21.44■■□□□ 1.02
CLN3-251ENST00000636853 SUPT16HQ9Y5B9 1047 aaKnown RBP21.44■■□□□ 1.02
CLN3-251ENST00000636853 DISP3Q9P2K9 1392 aa21.44■■□□□ 1.02
CLN3-251ENST00000636853 NPATQ14207 1427 aa21.43■■□□□ 1.02
CLN3-251ENST00000636853 WASHC2CQ9Y4E1 1318 aa21.43■■□□□ 1.02
CLN3-251ENST00000636853 COL17A1Q9UMD9 1497 aaPredicted RBP21.43■■□□□ 1.02
CLN3-251ENST00000636853 NEURL4Q96JN8 1562 aa21.42■■□□□ 1.02
CLN3-251ENST00000636853 YEATS2Q9ULM3 1422 aa21.41■■□□□ 1.02
CLN3-251ENST00000636853 MROH2AA6NES4 1674 aa21.41■■□□□ 1.02
CLN3-251ENST00000636853 DIP2BQ9P265 1576 aa21.41■■□□□ 1.02
CLN3-251ENST00000636853 ABCC3O15438 1527 aa21.41■■□□□ 1.02
CLN3-251ENST00000636853 IQGAP1P46940 1657 aa21.4■■□□□ 1.02
CLN3-251ENST00000636853 TSPOAP1O95153 1857 aa21.39■■□□□ 1.01
CLN3-251ENST00000636853 CHGAP10645 457 aaKnown RBP21.39■■□□□ 1.01
CLN3-251ENST00000636853 TMF1P82094 1093 aa21.39■■□□□ 1.01
CLN3-251ENST00000636853 ADGRF5Q8IZF2 1346 aa21.38■■□□□ 1.01
CLN3-251ENST00000636853 IFT172Q9UG01 1749 aa21.36■■□□□ 1.01
CLN3-251ENST00000636853 CAMSAP1Q5T5Y3 1602 aa21.36■■□□□ 1.01
CLN3-251ENST00000636853 MYOM2P54296 1465 aa21.35■■□□□ 1.01
CLN3-251ENST00000636853 SCAF11Q99590 1463 aaKnown RBP21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms