RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 U2SURPO15042 1029 aaKnown RBP7.37□□□□□ -1.23
SCN1A-212ENST00000636194 GRIPAP1Q4V328 841 aa7.37□□□□□ -1.23
SCN1A-212ENST00000636194 CPLX2Q6PUV4 134 aaKnown RBP7.37□□□□□ -1.23
SCN1A-212ENST00000636194 HSP90B2PQ58FF3 399 aa7.37□□□□□ -1.23
SCN1A-212ENST00000636194 DNAI2Q9GZS0 605 aa7.37□□□□□ -1.23
SCN1A-212ENST00000636194 CCDC175P0C221 793 aa7.37□□□□□ -1.23
SCN1A-212ENST00000636194 CSB-PGBD3P0DP91 1061 aa7.37□□□□□ -1.23
SCN1A-212ENST00000636194 ZFYVE27Q5T4F4 411 aa7.37□□□□□ -1.23
SCN1A-212ENST00000636194 SMC4Q9NTJ3 1288 aa7.37□□□□□ -1.23
SCN1A-212ENST00000636194 AEBP2Q6ZN18 517 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-212ENST00000636194 PDCL3Q9H2J4 239 aa7.36□□□□□ -1.23
SCN1A-212ENST00000636194 CLASRPQ8N2M8 674 aaKnown RBP7.36□□□□□ -1.23
SCN1A-212ENST00000636194 CHMP7Q8WUX9 453 aaPredicted RBP7.36□□□□□ -1.23
SCN1A-212ENST00000636194 TCERG1O14776 1098 aaKnown RBP7.36□□□□□ -1.23
SCN1A-212ENST00000636194 KIF3BO15066 747 aa7.36□□□□□ -1.23
SCN1A-212ENST00000636194 MYO10Q9HD67 2058 aa7.36□□□□□ -1.23
SCN1A-212ENST00000636194 SEPT7Q16181 437 aaKnown RBP7.36□□□□□ -1.23
SCN1A-212ENST00000636194 TRIM29Q14134 588 aa7.36□□□□□ -1.23
SCN1A-212ENST00000636194 H0YHG0 523 aa7.35□□□□□ -1.23
SCN1A-212ENST00000636194 ST18O60284 1047 aa7.35□□□□□ -1.23
SCN1A-212ENST00000636194 TOMM22Q9NS69 142 aa7.35□□□□□ -1.23
SCN1A-212ENST00000636194 DDX23Q9BUQ8 820 aaKnown RBP7.35□□□□□ -1.23
SCN1A-212ENST00000636194 STK31Q9BXU1 1019 aa7.35□□□□□ -1.23
SCN1A-212ENST00000636194 BECN2A8MW95 431 aa7.35□□□□□ -1.23
SCN1A-212ENST00000636194 ARGLU1Q9NWB6 273 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-212ENST00000636194 ERLIN2O94905 339 aa7.35□□□□□ -1.23
SCN1A-212ENST00000636194 SENP3Q9H4L4 574 aaPredicted RBP7.35□□□□□ -1.23
SCN1A-212ENST00000636194 VGFO15240 615 aaPredicted RBP7.34□□□□□ -1.23
SCN1A-212ENST00000636194 NF2P35240 595 aa7.34□□□□□ -1.23
SCN1A-212ENST00000636194 NEUROD2Q15784 382 aa7.34□□□□□ -1.23
SCN1A-212ENST00000636194 TRIM6-TRIM34B2RNG4 842 aa7.34□□□□□ -1.23
SCN1A-212ENST00000636194 PPM1EQ8WY54 764 aa7.34□□□□□ -1.23
SCN1A-212ENST00000636194 NAP1L1P55209 391 aaKnown RBP7.34□□□□□ -1.23
SCN1A-212ENST00000636194 GBP2P32456 591 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-212ENST00000636194 VPS37DQ86XT2 251 aa7.33□□□□□ -1.24
SCN1A-212ENST00000636194 ERCC4Q92889 916 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-212ENST00000636194 CFAP57Q96MR6 1250 aa7.33□□□□□ -1.24
SCN1A-212ENST00000636194 TMEM132AQ24JP5 1023 aa7.33□□□□□ -1.24
SCN1A-212ENST00000636194 HSP90AB4PQ58FF6 505 aa7.33□□□□□ -1.24
SCN1A-212ENST00000636194 FAM184AQ8NB25 1140 aa7.33□□□□□ -1.24
SCN1A-212ENST00000636194 HMGB1P1B2RPK0 211 aaPredicted RBP7.33□□□□□ -1.24
SCN1A-212ENST00000636194 SYCP1Q15431 976 aa7.33□□□□□ -1.24
SCN1A-212ENST00000636194 OFD1O75665 1012 aa7.32□□□□□ -1.24
SCN1A-212ENST00000636194 HSP90AB3PQ58FF7 597 aa7.32□□□□□ -1.24
SCN1A-212ENST00000636194 DEF6Q9H4E7 631 aa7.32□□□□□ -1.24
SCN1A-212ENST00000636194 HSP90AA2PQ14568 343 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-212ENST00000636194 SPATA24Q86W54 205 aa7.32□□□□□ -1.24
SCN1A-212ENST00000636194 ANKRD62A6NC57 917 aa7.32□□□□□ -1.24
SCN1A-212ENST00000636194 RAD21O60216 631 aa7.32□□□□□ -1.24
SCN1A-212ENST00000636194 TXLNBQ8N3L3 684 aa7.32□□□□□ -1.24
SCN1A-212ENST00000636194 CENPJQ9HC77 1338 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-212ENST00000636194 GOLGA6L10A6NI86 522 aa7.31□□□□□ -1.24
SCN1A-212ENST00000636194 CHMP5Q9NZZ3 219 aa7.31□□□□□ -1.24
SCN1A-212ENST00000636194 ZWINTO95229 277 aa7.31□□□□□ -1.24
SCN1A-212ENST00000636194 PABPN1Q86U42 306 aaKnown RBP eCLIP7.31□□□□□ -1.24
SCN1A-212ENST00000636194 CHIC2Q9UKJ5 165 aa7.31□□□□□ -1.24
SCN1A-212ENST00000636194 PAK3O75914 559 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-212ENST00000636194 STAMBPO95630 424 aa7.31□□□□□ -1.24
SCN1A-212ENST00000636194 EIF3AQ14152 1382 aaKnown RBP7.31□□□□□ -1.24
SCN1A-212ENST00000636194 MNS1Q8NEH6 495 aa7.31□□□□□ -1.24
SCN1A-212ENST00000636194 BRMS1Q9HCU9 246 aa7.31□□□□□ -1.24
SCN1A-212ENST00000636194 WDR70Q9NW82 654 aa7.31□□□□□ -1.24
SCN1A-212ENST00000636194 ERICH2A1L162 156 aa7.3□□□□□ -1.24
SCN1A-212ENST00000636194 HDGFL2Q7Z4V5 671 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-212ENST00000636194 LUC7LQ9NQ29 371 aaKnown RBP7.3□□□□□ -1.24
SCN1A-212ENST00000636194 DIAPH3Q9NSV4 1193 aa7.3□□□□□ -1.24
SCN1A-212ENST00000636194 PLEKHD1A6NEE1 506 aa7.3□□□□□ -1.24
SCN1A-212ENST00000636194 MAP3K9P80192 1104 aa7.3□□□□□ -1.24
SCN1A-212ENST00000636194 DHX16O60231 1041 aaKnown RBP7.3□□□□□ -1.24
SCN1A-212ENST00000636194 DDX11L8A8MPP1 907 aa7.29□□□□□ -1.24
SCN1A-212ENST00000636194 IRX6P78412 446 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-212ENST00000636194 ENOX2Q16206 610 aaKnown RBP7.29□□□□□ -1.24
SCN1A-212ENST00000636194 SPRYD3Q8NCJ5 442 aa7.29□□□□□ -1.24
SCN1A-212ENST00000636194 TSPYL1Q9H0U9 437 aa7.29□□□□□ -1.24
SCN1A-212ENST00000636194 RWDD1Q9H446 243 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-212ENST00000636194 CBX1P83916 185 aa7.29□□□□□ -1.24
SCN1A-212ENST00000636194 RABEP1Q15276 862 aa7.29□□□□□ -1.24
SCN1A-212ENST00000636194 TRHP20396 242 aaPredicted RBP7.29□□□□□ -1.24
SCN1A-212ENST00000636194 SOGA3Q5TF21 947 aa7.29□□□□□ -1.24
SCN1A-212ENST00000636194 NAT10Q9H0A0 1025 aaKnown RBP7.29□□□□□ -1.24
SCN1A-212ENST00000636194 LMOD3Q0VAK6 560 aa7.29□□□□□ -1.24
SCN1A-212ENST00000636194 HMGB1P09429 215 aaKnown RBP7.28□□□□□ -1.24
SCN1A-212ENST00000636194 TRDNQ13061 729 aa7.28□□□□□ -1.24
SCN1A-212ENST00000636194 CARD11Q9BXL7 1154 aa7.28□□□□□ -1.24
SCN1A-212ENST00000636194 SEPT10Q9P0V9 454 aa7.28□□□□□ -1.24
SCN1A-212ENST00000636194 MSH5O43196 834 aa7.28□□□□□ -1.24
SCN1A-212ENST00000636194 PMFBP1Q8TBY8 1022 aa7.28□□□□□ -1.24
SCN1A-212ENST00000636194 NEBLO76041 1014 aa7.28□□□□□ -1.24
SCN1A-212ENST00000636194 SAFBQ15424 915 aaKnown RBP eCLIP7.28□□□□□ -1.24
SCN1A-212ENST00000636194 CEP63Q96MT8 703 aa7.28□□□□□ -1.24
SCN1A-212ENST00000636194 XBP1P17861 261 aa7.28□□□□□ -1.24
SCN1A-212ENST00000636194 TMF1P82094 1093 aa7.27□□□□□ -1.25
SCN1A-212ENST00000636194 CCDC91Q7Z6B0 441 aa7.27□□□□□ -1.25
SCN1A-212ENST00000636194 GSE1Q14687 1217 aa7.27□□□□□ -1.25
SCN1A-212ENST00000636194 KCNH8Q96L42 1107 aa7.27□□□□□ -1.25
SCN1A-212ENST00000636194 RALBP1Q15311 655 aa7.27□□□□□ -1.25
SCN1A-212ENST00000636194 ZNHIT6Q9NWK9 470 aaKnown RBP7.27□□□□□ -1.25
SCN1A-212ENST00000636194 MFAP1P55081 439 aaKnown RBP7.26□□□□□ -1.25
SCN1A-212ENST00000636194 ZNF710Q8N1W2 664 aa7.26□□□□□ -1.25
SCN1A-212ENST00000636194 CLIP1P30622 1438 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms