RNA–Protein interactions for RNA: ENST00000632629.1

NPHP3-ACAD11-202, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

APPRIS P1 TSL 2

Gene NPHP3-ACAD11, Length 695 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-202ENST00000632629 KIAA1468Q9P260 1216 aa8.9□□□□□ -0.98
NPHP3-ACAD11-202ENST00000632629 PCDHGA10Q9Y5H3 936 aa8.9□□□□□ -0.98
NPHP3-ACAD11-202ENST00000632629 PDE4AP27815 886 aa8.89□□□□□ -0.99
NPHP3-ACAD11-202ENST00000632629 MAP3K9P80192 1104 aa8.89□□□□□ -0.99
NPHP3-ACAD11-202ENST00000632629 NKX1-1Q15270 411 aaPredicted RBP8.86□□□□□ -0.99
NPHP3-ACAD11-202ENST00000632629 SEPT9Q9UHD8 586 aaPredicted RBP8.86□□□□□ -0.99
NPHP3-ACAD11-202ENST00000632629 CHGAP10645 457 aaKnown RBP8.85□□□□□ -0.99
NPHP3-ACAD11-202ENST00000632629 ONECUT3O60422 494 aaPredicted RBP8.84□□□□□ -0.99
NPHP3-ACAD11-202ENST00000632629 TYW1BQ6NUM6 668 aa8.84□□□□□ -0.99
NPHP3-ACAD11-202ENST00000632629 FBXW7Q969H0 707 aa8.84□□□□□ -0.99
NPHP3-ACAD11-202ENST00000632629 RYDENQ9NUL5 291 aaKnown RBP8.84□□□□□ -0.99
NPHP3-ACAD11-202ENST00000632629 TSR3Q9UJK0 312 aaKnown RBP8.84□□□□□ -0.99
NPHP3-ACAD11-202ENST00000632629 LARP6Q9BRS8 491 aaKnown RBP8.83□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 HPS5Q9UPZ3 1129 aa8.83□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 NRG2O14511 850 aaPredicted RBP8.82□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.82□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 PHF14O94880 888 aa8.81□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 FAM98CQ17RN3 349 aaKnown RBP8.81□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 DDX27Q96GQ7 796 aaKnown RBP8.81□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 PRKD2Q9BZL6 878 aa8.81□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 LRCH3Q96II8 777 aa8.8□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 DNAJC5Q9H3Z4 198 aa8.8□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 EMILIN3Q9NT22 766 aa8.8□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 C6orf132Q5T0Z8 1188 aa8.79□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 ZNF787Q6DD87 383 aa8.79□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 TRIM6-TRIM34B2RNG4 842 aa8.78□□□□□ -1
NPHP3-ACAD11-202ENST00000632629 MFSD10Q14728 455 aa8.76□□□□□ -1.01
NPHP3-ACAD11-202ENST00000632629 TJAP1Q5JTD0 557 aa8.76□□□□□ -1.01
NPHP3-ACAD11-202ENST00000632629 V9GY48 417 aaPredicted RBP8.76□□□□□ -1.01
NPHP3-ACAD11-202ENST00000632629 PPP4CP60510 307 aa8.74□□□□□ -1.01
NPHP3-ACAD11-202ENST00000632629 ZNF775Q96BV0 537 aaPredicted RBP8.74□□□□□ -1.01
NPHP3-ACAD11-202ENST00000632629 PPP1R18Q6NYC8 613 aa8.73□□□□□ -1.01
NPHP3-ACAD11-202ENST00000632629 EPAS1Q99814 870 aa8.73□□□□□ -1.01
NPHP3-ACAD11-202ENST00000632629 PDZRN3Q9UPQ7 1066 aa8.71□□□□□ -1.02
NPHP3-ACAD11-202ENST00000632629 RBM33Q96EV2 1170 aaKnown RBP8.7□□□□□ -1.02
NPHP3-ACAD11-202ENST00000632629 MTRQ99707 1265 aa8.69□□□□□ -1.02
NPHP3-ACAD11-202ENST00000632629 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.69□□□□□ -1.02
NPHP3-ACAD11-202ENST00000632629 PACS2Q86VP3 889 aa8.68□□□□□ -1.02
NPHP3-ACAD11-202ENST00000632629 IL21Q9HBE4 155 aa8.68□□□□□ -1.02
NPHP3-ACAD11-202ENST00000632629 TSKSQ9UJT2 592 aa8.68□□□□□ -1.02
NPHP3-ACAD11-202ENST00000632629 GTPBP6O43824 516 aaPredicted RBP8.67□□□□□ -1.02
NPHP3-ACAD11-202ENST00000632629 AMER1Q5JTC6 1135 aaPredicted RBP8.67□□□□□ -1.02
NPHP3-ACAD11-202ENST00000632629 SAMD7Q7Z3H4 446 aa8.66□□□□□ -1.02
NPHP3-ACAD11-202ENST00000632629 ZNF516Q92618 1163 aa8.66□□□□□ -1.02
NPHP3-ACAD11-202ENST00000632629 DDX12PQ92771 950 aa8.63□□□□□ -1.03
NPHP3-ACAD11-202ENST00000632629 SMAPO00193 183 aa8.62□□□□□ -1.03
NPHP3-ACAD11-202ENST00000632629 DPYSL4O14531 572 aa8.62□□□□□ -1.03
NPHP3-ACAD11-202ENST00000632629 TSR1Q2NL82 804 aaKnown RBP8.61□□□□□ -1.03
NPHP3-ACAD11-202ENST00000632629 NKX2-3Q8TAU0 364 aa8.61□□□□□ -1.03
NPHP3-ACAD11-202ENST00000632629 EN1Q05925 392 aaPredicted RBP8.59□□□□□ -1.03
NPHP3-ACAD11-202ENST00000632629 CAMK2BQ13554 666 aa8.59□□□□□ -1.03
NPHP3-ACAD11-202ENST00000632629 MAP3K7O43318 606 aa8.58□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 CADPS2Q86UW7 1296 aa8.58□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 CDCA7LQ96GN5 454 aa8.58□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 GGCXP38435 758 aa8.57□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 APLP1P51693 650 aa8.57□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 NBR1Q14596 966 aa8.57□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 FAM198AQ9UFP1 575 aa8.57□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 C3orf80F5H4A9 247 aa8.56□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 POTECB2RU33 542 aa8.55□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 PRSS12P56730 875 aa8.55□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 TRIM67Q6ZTA4 783 aa8.55□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 TATDN2Q93075 761 aa8.55□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 RNF40O75150 1001 aa8.54□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 MYT1Q01538 1121 aa8.54□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 TMUB1Q9BVT8 246 aa8.54□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 PKDCCQ504Y2 493 aa8.53□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 PNMA3Q9UL41 463 aa8.53□□□□□ -1.04
NPHP3-ACAD11-202ENST00000632629 NBPF26B4DH59 902 aa8.52□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 HDGFP51858 240 aaKnown RBP8.52□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 COPS2P61201 443 aa8.52□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 DGAT1O75907 488 aa8.51□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 SLC19A1P41440 591 aa8.5□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 CERKQ8TCT0 537 aa8.5□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 NUDT18Q6ZVK8 323 aa8.48□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 EMID1Q96A84 441 aaPredicted RBP8.48□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 RNF223E7ERA6 249 aa8.47□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 ZPR1O75312 459 aa8.47□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 LCE2AQ5TA79 106 aaPredicted RBP8.47□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 TREML4Q6UXN2 200 aa8.47□□□□□ -1.05
NPHP3-ACAD11-202ENST00000632629 PDIA6Q15084 440 aa8.46□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 SPRYD7Q5W111 196 aa8.46□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 NECTIN2Q92692 538 aa8.46□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 PRIM1P49642 420 aaKnown RBP8.45□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 PRR20EP86478 221 aa8.45□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 PRR20CP86479 221 aa8.45□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 PRR20DP86480 221 aa8.45□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 PRR20BP86481 221 aa8.45□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 PRR20AP86496 221 aa8.45□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 ZNF598Q86UK7 904 aaKnown RBP8.45□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 DCAF8L2P0C7V8 631 aa8.44□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 SWT1Q5T5J6 900 aaKnown RBP8.44□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 RTN4Q9NQC3 1192 aaKnown RBP8.43□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 FAM187AA6NFU0 413 aa8.42□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 SPDYE16A6NNV3 312 aaPredicted RBP8.42□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 SLF2Q8IX21 1173 aa8.42□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 GRXCR2A6NFK2 248 aa8.4□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 RBM27Q9P2N5 1060 aaKnown RBP8.4□□□□□ -1.06
NPHP3-ACAD11-202ENST00000632629 TNFRSF10AO00220 468 aa8.39□□□□□ -1.07
NPHP3-ACAD11-202ENST00000632629 ST8SIA5O15466 376 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms