RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 UHRF1BP1Q6BDS2 1440 aa18.72■□□□□ 0.59
LDB3-209ENST00000623056 CARD11Q9BXL7 1154 aa18.71■□□□□ 0.58
LDB3-209ENST00000623056 CARMIL2Q6F5E8 1435 aa18.7■□□□□ 0.58
LDB3-209ENST00000623056 CHD1O14646 1710 aa18.7■□□□□ 0.58
LDB3-209ENST00000623056 PDE3BQ13370 1112 aa18.7■□□□□ 0.58
LDB3-209ENST00000623056 PKD2Q13563 968 aa18.7■□□□□ 0.58
LDB3-209ENST00000623056 DDRGK1Q96HY6 314 aa18.68■□□□□ 0.58
LDB3-209ENST00000623056 E9PCH4 1651 aa18.68■□□□□ 0.58
LDB3-209ENST00000623056 ADGBQ8N7X0 1667 aa18.67■□□□□ 0.58
LDB3-209ENST00000623056 ST20-MTHFSA0A0A6YYL1 179 aa18.66■□□□□ 0.58
LDB3-209ENST00000623056 CAMSAP2Q08AD1 1489 aa18.65■□□□□ 0.58
LDB3-209ENST00000623056 NLRP13Q86W25 1043 aa18.65■□□□□ 0.58
LDB3-209ENST00000623056 SKAP1Q86WV1 359 aa18.65■□□□□ 0.58
LDB3-209ENST00000623056 CDCA7LQ96GN5 454 aa18.65■□□□□ 0.58
LDB3-209ENST00000623056 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.64■□□□□ 0.57
LDB3-209ENST00000623056 PRG4Q92954 1404 aaPredicted RBP18.64■□□□□ 0.57
LDB3-209ENST00000623056 GSE1Q14687 1217 aa18.63■□□□□ 0.57
LDB3-209ENST00000623056 PLIN1O60240 522 aa18.63■□□□□ 0.57
LDB3-209ENST00000623056 BRPF3Q9ULD4 1205 aa18.63■□□□□ 0.57
LDB3-209ENST00000623056 ARHGEF12Q9NZN5 1544 aa18.63■□□□□ 0.57
LDB3-209ENST00000623056 ADGRL2O95490 1459 aa18.62■□□□□ 0.57
LDB3-209ENST00000623056 PARD3Q8TEW0 1356 aa18.62■□□□□ 0.57
LDB3-209ENST00000623056 CRBNQ96SW2 442 aa18.61■□□□□ 0.57
LDB3-209ENST00000623056 NFKBIBQ15653 356 aa18.6■□□□□ 0.57
LDB3-209ENST00000623056 CFDP1Q9UEE9 299 aaPredicted RBP18.59■□□□□ 0.57
LDB3-209ENST00000623056 CROCC2H7BZ55 1655 aa18.59■□□□□ 0.57
LDB3-209ENST00000623056 KDM2AQ9Y2K7 1162 aa18.58■□□□□ 0.56
LDB3-209ENST00000623056 ANKRD30AQ9BXX3 1397 aa18.57■□□□□ 0.56
LDB3-209ENST00000623056 ANKRD50Q9ULJ7 1429 aa18.57■□□□□ 0.56
LDB3-209ENST00000623056 ITSN2Q9NZM3 1697 aa18.56■□□□□ 0.56
LDB3-209ENST00000623056 SLC4A3P48751 1232 aa18.56■□□□□ 0.56
LDB3-209ENST00000623056 ABCA8O94911 1581 aa18.56■□□□□ 0.56
LDB3-209ENST00000623056 FRAT1Q92837 279 aaPredicted RBP18.55■□□□□ 0.56
LDB3-209ENST00000623056 BLMP54132 1417 aaPredicted RBP18.54■□□□□ 0.56
LDB3-209ENST00000623056 GPATCH8Q9UKJ3 1502 aaKnown RBP18.54■□□□□ 0.56
LDB3-209ENST00000623056 ZNF777Q9ULD5 760 aaPredicted RBP18.54■□□□□ 0.56
LDB3-209ENST00000623056 NUP155O75694 1391 aa18.54■□□□□ 0.56
LDB3-209ENST00000623056 PTPRGP23470 1445 aa18.54■□□□□ 0.56
LDB3-209ENST00000623056 TROQ12816 1431 aaPredicted RBP18.54■□□□□ 0.56
LDB3-209ENST00000623056 DCAF11Q8TEB1 546 aa18.54■□□□□ 0.56
LDB3-209ENST00000623056 OSCARQ8IYS5 282 aa18.53■□□□□ 0.56
LDB3-209ENST00000623056 ERCC6L2Q5T890 1561 aa18.53■□□□□ 0.56
LDB3-209ENST00000623056 KDM2BQ8NHM5 1336 aa18.53■□□□□ 0.56
LDB3-209ENST00000623056 INSRP06213 1382 aa18.52■□□□□ 0.56
LDB3-209ENST00000623056 PER1O15534 1290 aaPredicted RBP18.52■□□□□ 0.56
LDB3-209ENST00000623056 DAXXQ9UER7 740 aaPredicted RBP18.52■□□□□ 0.56
LDB3-209ENST00000623056 ZMYM4Q5VZL5 1548 aa18.51■□□□□ 0.55
LDB3-209ENST00000623056 C20orf194Q5TEA3 1177 aa18.51■□□□□ 0.55
LDB3-209ENST00000623056 ATP10BO94823 1461 aa18.51■□□□□ 0.55
LDB3-209ENST00000623056 SHROOM2Q13796 1616 aa18.5■□□□□ 0.55
LDB3-209ENST00000623056 PLEKHH2Q8IVE3 1493 aa18.49■□□□□ 0.55
LDB3-209ENST00000623056 KDM5DQ9BY66 1539 aa18.48■□□□□ 0.55
LDB3-209ENST00000623056 FAM161AQ3B820 660 aa18.48■□□□□ 0.55
LDB3-209ENST00000623056 CENPQQ7L2Z9 268 aaPredicted RBP18.48■□□□□ 0.55
LDB3-209ENST00000623056 CC2D1BQ5T0F9 858 aaKnown RBP18.47■□□□□ 0.55
LDB3-209ENST00000623056 C8orf34Q49A92 452 aa18.46■□□□□ 0.55
LDB3-209ENST00000623056 ADCY10Q96PN6 1610 aa18.46■□□□□ 0.55
LDB3-209ENST00000623056 PLEKHD1A6NEE1 506 aa18.45■□□□□ 0.54
LDB3-209ENST00000623056 TRPM1Q7Z4N2 1603 aa18.45■□□□□ 0.54
LDB3-209ENST00000623056 PRAG1Q86YV5 1406 aa18.43■□□□□ 0.54
LDB3-209ENST00000623056 CLASP1Q7Z460 1538 aa18.43■□□□□ 0.54
LDB3-209ENST00000623056 C9orf84Q5VXU9 1444 aa18.43■□□□□ 0.54
LDB3-209ENST00000623056 FRAT2O75474 233 aaPredicted RBP18.43■□□□□ 0.54
LDB3-209ENST00000623056 COL17A1Q9UMD9 1497 aaPredicted RBP18.43■□□□□ 0.54
LDB3-209ENST00000623056 SHANK2Q9UPX8 1470 aa18.43■□□□□ 0.54
LDB3-209ENST00000623056 UBE2Q2Q8WVN8 375 aa18.41■□□□□ 0.54
LDB3-209ENST00000623056 CDC42BPAQ5VT25 1732 aa18.41■□□□□ 0.54
LDB3-209ENST00000623056 NBPF1Q3BBV0 1214 aa18.4■□□□□ 0.54
LDB3-209ENST00000623056 PANK3Q9H999 370 aa18.4■□□□□ 0.54
LDB3-209ENST00000623056 DISP3Q9P2K9 1392 aa18.4■□□□□ 0.54
LDB3-209ENST00000623056 ADAMTS8Q9UP79 889 aa18.38■□□□□ 0.53
LDB3-209ENST00000623056 GPRASP1Q5JY77 1395 aa18.38■□□□□ 0.53
LDB3-209ENST00000623056 DUSP27Q5VZP5 1158 aa18.38■□□□□ 0.53
LDB3-209ENST00000623056 TESK2Q96S53 571 aa18.37■□□□□ 0.53
LDB3-209ENST00000623056 ABCC10Q5T3U5 1492 aa18.37■□□□□ 0.53
LDB3-209ENST00000623056 EIF5BO60841 1220 aaKnown RBP18.37■□□□□ 0.53
LDB3-209ENST00000623056 PLEKHH1Q9ULM0 1364 aa18.36■□□□□ 0.53
LDB3-209ENST00000623056 RGS3P49796 1198 aa18.35■□□□□ 0.53
LDB3-209ENST00000623056 FAM43AQ8N2R8 423 aa18.35■□□□□ 0.53
LDB3-209ENST00000623056 RIMBP3CA6NJZ7 1639 aa18.35■□□□□ 0.53
LDB3-209ENST00000623056 RIMBP3BA6NNM3 1639 aa18.35■□□□□ 0.53
LDB3-209ENST00000623056 RIMBP3Q9UFD9 1639 aa18.35■□□□□ 0.53
LDB3-209ENST00000623056 ERBINQ96RT1 1412 aa18.34■□□□□ 0.53
LDB3-209ENST00000623056 PRDM15P57071 1507 aaPredicted RBP18.34■□□□□ 0.53
LDB3-209ENST00000623056 LAMC1P11047 1609 aa18.34■□□□□ 0.53
LDB3-209ENST00000623056 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.34■□□□□ 0.53
LDB3-209ENST00000623056 TSPY4P0CV99 314 aa18.33■□□□□ 0.53
LDB3-209ENST00000623056 TSPY10P0CW01 314 aa18.33■□□□□ 0.53
LDB3-209ENST00000623056 CCDC144AA2RUR9 1427 aa18.33■□□□□ 0.53
LDB3-209ENST00000623056 ABCC2Q92887 1545 aa18.33■□□□□ 0.52
LDB3-209ENST00000623056 FAM135AQ9P2D6 1515 aa18.33■□□□□ 0.52
LDB3-209ENST00000623056 RGL3Q3MIN7 710 aa18.32■□□□□ 0.52
LDB3-209ENST00000623056 ZNF521Q96K83 1311 aa18.32■□□□□ 0.52
LDB3-209ENST00000623056 GOLGA2Q08379 1002 aa18.31■□□□□ 0.52
LDB3-209ENST00000623056 A2MP01023 1474 aa18.3■□□□□ 0.52
LDB3-209ENST00000623056 RSPH6AQ9H0K4 717 aa18.3■□□□□ 0.52
LDB3-209ENST00000623056 TMF1P82094 1093 aa18.29■□□□□ 0.52
LDB3-209ENST00000623056 WDR43Q15061 677 aaKnown RBP eCLIP18.29■□□□□ 0.52
LDB3-209ENST00000623056 PPP2R1AP30153 589 aa18.27■□□□□ 0.52
LDB3-209ENST00000623056 EIF3AQ14152 1382 aaKnown RBP18.27■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms