RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 SPAG9O60271 1321 aaKnown RBP14.69□□□□□ -0.06
CUX1-221ENST00000622516 UHRF1BP1LA0JNW5 1464 aa14.69□□□□□ -0.06
CUX1-221ENST00000622516 CCDC144AA2RUR9 1427 aa14.69□□□□□ -0.06
CUX1-221ENST00000622516 FKBP8Q14318 412 aa14.68□□□□□ -0.06
CUX1-221ENST00000622516 NBPF1Q3BBV0 1214 aa14.68□□□□□ -0.06
CUX1-221ENST00000622516 MRS2Q9HD23 443 aa14.67□□□□□ -0.06
CUX1-221ENST00000622516 PLA2R1Q13018 1463 aa14.67□□□□□ -0.06
CUX1-221ENST00000622516 SENP3-EIF4A1A0A087X0R7 540 aa14.67□□□□□ -0.06
CUX1-221ENST00000622516 BCORL1Q5H9F3 1711 aa14.66□□□□□ -0.06
CUX1-221ENST00000622516 OSCARQ8IYS5 282 aa14.66□□□□□ -0.06
CUX1-221ENST00000622516 ROCK2O75116 1388 aaKnown RBP14.65□□□□□ -0.06
CUX1-221ENST00000622516 MAST1Q9Y2H9 1570 aa14.63□□□□□ -0.07
CUX1-221ENST00000622516 ABCC1P33527 1531 aa14.63□□□□□ -0.07
CUX1-221ENST00000622516 WDR7Q9Y4E6 1490 aa14.63□□□□□ -0.07
CUX1-221ENST00000622516 UHRF1BP1Q6BDS2 1440 aa14.63□□□□□ -0.07
CUX1-221ENST00000622516 KDM5CP41229 1560 aa14.62□□□□□ -0.07
CUX1-221ENST00000622516 DUOX2Q9NRD8 1548 aa14.62□□□□□ -0.07
CUX1-221ENST00000622516 RALGAPBQ86X10 1494 aa14.62□□□□□ -0.07
CUX1-221ENST00000622516 FANCAO15360 1455 aa14.61□□□□□ -0.07
CUX1-221ENST00000622516 PLXNC1O60486 1568 aa14.61□□□□□ -0.07
CUX1-221ENST00000622516 ASXL2Q76L83 1435 aa14.61□□□□□ -0.07
CUX1-221ENST00000622516 SCAPERQ9BY12 1400 aa14.61□□□□□ -0.07
CUX1-221ENST00000622516 KIF3BO15066 747 aa14.61□□□□□ -0.07
CUX1-221ENST00000622516 UNC13BO14795 1591 aa14.6□□□□□ -0.07
CUX1-221ENST00000622516 NPM1P06748 294 aaKnown RBP eCLIP14.6□□□□□ -0.07
CUX1-221ENST00000622516 IRX6P78412 446 aaPredicted RBP14.59□□□□□ -0.07
CUX1-221ENST00000622516 ERBINQ96RT1 1412 aa14.59□□□□□ -0.07
CUX1-221ENST00000622516 DHX29Q7Z478 1369 aaKnown RBP14.58□□□□□ -0.07
CUX1-221ENST00000622516 BCL11AQ9H165 835 aa14.58□□□□□ -0.08
CUX1-221ENST00000622516 PRAG1Q86YV5 1406 aa14.58□□□□□ -0.08
CUX1-221ENST00000622516 A2MP01023 1474 aa14.58□□□□□ -0.08
CUX1-221ENST00000622516 IQGAP3Q86VI3 1631 aa14.56□□□□□ -0.08
CUX1-221ENST00000622516 NEFLP07196 543 aa14.56□□□□□ -0.08
CUX1-221ENST00000622516 ADGRL1O94910 1474 aa14.56□□□□□ -0.08
CUX1-221ENST00000622516 POLR1AO95602 1720 aaPredicted RBP14.55□□□□□ -0.08
CUX1-221ENST00000622516 ZFYVE16Q7Z3T8 1539 aa14.54□□□□□ -0.08
CUX1-221ENST00000622516 MAGI2Q86UL8 1455 aa14.52□□□□□ -0.08
CUX1-221ENST00000622516 RTEL1-TNFRSF6BF6WH68 1400 aa14.51□□□□□ -0.09
CUX1-221ENST00000622516 ATP7AQ04656 1500 aa14.5□□□□□ -0.09
CUX1-221ENST00000622516 ABCA9Q8IUA7 1624 aa14.5□□□□□ -0.09
CUX1-221ENST00000622516 ARID4BQ4LE39 1312 aaPredicted RBP14.5□□□□□ -0.09
CUX1-221ENST00000622516 TRPM1Q7Z4N2 1603 aa14.5□□□□□ -0.09
CUX1-221ENST00000622516 TMC1Q8TDI8 760 aa14.49□□□□□ -0.09
CUX1-221ENST00000622516 E9PCH4 1651 aa14.49□□□□□ -0.09
CUX1-221ENST00000622516 GGT6Q6P531 493 aa14.49□□□□□ -0.09
CUX1-221ENST00000622516 TESK2Q96S53 571 aa14.49□□□□□ -0.09
CUX1-221ENST00000622516 DISP3Q9P2K9 1392 aa14.48□□□□□ -0.09
CUX1-221ENST00000622516 ARAP3Q8WWN8 1544 aa14.48□□□□□ -0.09
CUX1-221ENST00000622516 ATP10AO60312 1499 aa14.48□□□□□ -0.09
CUX1-221ENST00000622516 RAPGEF3O95398 923 aa14.48□□□□□ -0.09
CUX1-221ENST00000622516 CD109Q6YHK3 1445 aa14.47□□□□□ -0.09
CUX1-221ENST00000622516 KANK1Q14678 1352 aa14.47□□□□□ -0.09
CUX1-221ENST00000622516 CC2D1BQ5T0F9 858 aaKnown RBP14.46□□□□□ -0.09
CUX1-221ENST00000622516 CYB5RLQ6IPT4 315 aa14.46□□□□□ -0.09
CUX1-221ENST00000622516 CHGAP10645 457 aaKnown RBP14.46□□□□□ -0.1
CUX1-221ENST00000622516 UGGT1Q9NYU2 1555 aa14.45□□□□□ -0.1
CUX1-221ENST00000622516 INO80Q9ULG1 1556 aaPredicted RBP14.44□□□□□ -0.1
CUX1-221ENST00000622516 PANK3Q9H999 370 aa14.44□□□□□ -0.1
CUX1-221ENST00000622516 CFAP65Q6ZU64 1925 aaKnown RBP14.44□□□□□ -0.1
CUX1-221ENST00000622516 GPRASP1Q5JY77 1395 aa14.44□□□□□ -0.1
CUX1-221ENST00000622516 PNISRQ8TF01 805 aaKnown RBP14.44□□□□□ -0.1
CUX1-221ENST00000622516 SALL2Q9Y467 1007 aaPredicted RBP14.44□□□□□ -0.1
CUX1-221ENST00000622516 ZBED9Q6R2W3 1325 aa14.44□□□□□ -0.1
CUX1-221ENST00000622516 SENP3Q9H4L4 574 aaPredicted RBP14.43□□□□□ -0.1
CUX1-221ENST00000622516 TMF1P82094 1093 aa14.42□□□□□ -0.1
CUX1-221ENST00000622516 PER1O15534 1290 aaPredicted RBP14.42□□□□□ -0.1
CUX1-221ENST00000622516 CLTCL1P53675 1640 aa14.42□□□□□ -0.1
CUX1-221ENST00000622516 CFAP70Q5T0N1 1121 aa14.41□□□□□ -0.1
CUX1-221ENST00000622516 KIDINS220Q9ULH0 1771 aa14.41□□□□□ -0.1
CUX1-221ENST00000622516 TSHZ2Q9NRE2 1034 aa14.41□□□□□ -0.1
CUX1-221ENST00000622516 PTPRTO14522 1441 aa14.41□□□□□ -0.1
CUX1-221ENST00000622516 TRPM2O94759 1503 aa14.4□□□□□ -0.1
CUX1-221ENST00000622516 PRDM15P57071 1507 aaPredicted RBP14.4□□□□□ -0.1
CUX1-221ENST00000622516 ADGRF5Q8IZF2 1346 aa14.4□□□□□ -0.1
CUX1-221ENST00000622516 MYBBP1AQ9BQG0 1328 aaKnown RBP14.4□□□□□ -0.1
CUX1-221ENST00000622516 ZNF518AQ6AHZ1 1483 aa14.4□□□□□ -0.1
CUX1-221ENST00000622516 SPHKAPQ2M3C7 1700 aa14.39□□□□□ -0.11
CUX1-221ENST00000622516 DEPDC5O75140 1603 aa14.39□□□□□ -0.11
CUX1-221ENST00000622516 RALBP1Q15311 655 aa14.38□□□□□ -0.11
CUX1-221ENST00000622516 NUTM2DQ5VT03 806 aaPredicted RBP14.38□□□□□ -0.11
CUX1-221ENST00000622516 TET3O43151 1660 aa14.38□□□□□ -0.11
CUX1-221ENST00000622516 MROH1Q8NDA8 1641 aa14.38□□□□□ -0.11
CUX1-221ENST00000622516 COL17A1Q9UMD9 1497 aaPredicted RBP14.37□□□□□ -0.11
CUX1-221ENST00000622516 KTN1Q86UP2 1357 aaKnown RBP14.37□□□□□ -0.11
CUX1-221ENST00000622516 WASHC2CQ9Y4E1 1318 aa14.37□□□□□ -0.11
CUX1-221ENST00000622516 EIF2AK4Q9P2K8 1649 aaKnown RBP14.36□□□□□ -0.11
CUX1-221ENST00000622516 POGZQ7Z3K3 1410 aa14.36□□□□□ -0.11
CUX1-221ENST00000622516 MADDQ8WXG6 1647 aa14.36□□□□□ -0.11
CUX1-221ENST00000622516 VWDEQ8N2E2 1590 aa14.35□□□□□ -0.11
CUX1-221ENST00000622516 CEP152O94986 1710 aa14.34□□□□□ -0.11
CUX1-221ENST00000622516 NLRP13Q86W25 1043 aa14.34□□□□□ -0.11
CUX1-221ENST00000622516 PARD3Q8TEW0 1356 aa14.33□□□□□ -0.12
CUX1-221ENST00000622516 PPRC1Q5VV67 1664 aaKnown RBP14.32□□□□□ -0.12
CUX1-221ENST00000622516 BRD4O60885 1362 aaPredicted RBP14.32□□□□□ -0.12
CUX1-221ENST00000622516 TMEM132EQ6IEE7 984 aa14.31□□□□□ -0.12
CUX1-221ENST00000622516 EFCAB6Q5THR3 1501 aa14.31□□□□□ -0.12
CUX1-221ENST00000622516 NPATQ14207 1427 aa14.31□□□□□ -0.12
CUX1-221ENST00000622516 LAMC1P11047 1609 aa14.3□□□□□ -0.12
CUX1-221ENST00000622516 FRMPD1Q5SYB0 1578 aa14.3□□□□□ -0.12
CUX1-221ENST00000622516 SCAF11Q99590 1463 aaKnown RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms