RNA–Protein interactions for RNA: ENST00000622226.1

PDLIM2-220, Transcript of PDZ and LIM domain 2, humanhuman

Gene PDLIM2, Length 6,559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-220ENST00000622226 HOMER1Q86YM7 354 aa18.88■□□□□ 0.61
PDLIM2-220ENST00000622226 H3BQV1 296 aa18.88■□□□□ 0.61
PDLIM2-220ENST00000622226 IFFO2Q5TF58 517 aa18.88■□□□□ 0.61
PDLIM2-220ENST00000622226 VPS53Q5VIR6 699 aa18.88■□□□□ 0.61
PDLIM2-220ENST00000622226 CCDC70Q6NSX1 233 aa18.87■□□□□ 0.61
PDLIM2-220ENST00000622226 CCDC146Q8IYE0 955 aa18.87■□□□□ 0.61
PDLIM2-220ENST00000622226 KTN1Q86UP2 1357 aaKnown RBP18.87■□□□□ 0.61
PDLIM2-220ENST00000622226 RB1CC1Q8TDY2 1594 aa18.87■□□□□ 0.61
PDLIM2-220ENST00000622226 PDE4AP27815 886 aa18.87■□□□□ 0.61
PDLIM2-220ENST00000622226 FAM43AQ8N2R8 423 aa18.86■□□□□ 0.61
PDLIM2-220ENST00000622226 RSF1Q96T23 1441 aaPredicted RBP18.85■□□□□ 0.61
PDLIM2-220ENST00000622226 G3V3G9 751 aa18.85■□□□□ 0.61
PDLIM2-220ENST00000622226 DCAF8Q5TAQ9 597 aa18.85■□□□□ 0.61
PDLIM2-220ENST00000622226 FBXW7Q969H0 707 aa18.85■□□□□ 0.61
PDLIM2-220ENST00000622226 MARCH6O60337 910 aa18.84■□□□□ 0.61
PDLIM2-220ENST00000622226 GPATCH3Q96I76 525 aa18.84■□□□□ 0.61
PDLIM2-220ENST00000622226 R3HCC1Q9Y3T6 440 aaKnown RBP18.84■□□□□ 0.61
PDLIM2-220ENST00000622226 PODXL2Q9NZ53 605 aa18.83■□□□□ 0.61
PDLIM2-220ENST00000622226 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.82■□□□□ 0.6
PDLIM2-220ENST00000622226 RILPL2Q969X0 211 aa18.82■□□□□ 0.6
PDLIM2-220ENST00000622226 PCMTD1Q96MG8 357 aaPredicted RBP18.82■□□□□ 0.6
PDLIM2-220ENST00000622226 SKOR2Q2VWA4 1001 aaPredicted RBP18.82■□□□□ 0.6
PDLIM2-220ENST00000622226 NOM1Q5C9Z4 860 aaKnown RBP18.82■□□□□ 0.6
PDLIM2-220ENST00000622226 MCTP1Q6DN14 999 aa18.82■□□□□ 0.6
PDLIM2-220ENST00000622226 MAP7D2Q96T17 732 aa18.82■□□□□ 0.6
PDLIM2-220ENST00000622226 TMX4Q9H1E5 349 aaPredicted RBP18.82■□□□□ 0.6
PDLIM2-220ENST00000622226 BAZ1BQ9UIG0 1483 aaKnown RBP18.81■□□□□ 0.6
PDLIM2-220ENST00000622226 TPM1P09493 284 aa18.81■□□□□ 0.6
PDLIM2-220ENST00000622226 FAM184AQ8NB25 1140 aa18.81■□□□□ 0.6
PDLIM2-220ENST00000622226 LTV1Q96GA3 475 aaPredicted RBP18.81■□□□□ 0.6
PDLIM2-220ENST00000622226 PLIN1O60240 522 aa18.8■□□□□ 0.6
PDLIM2-220ENST00000622226 PLCD4Q9BRC7 762 aa18.8■□□□□ 0.6
PDLIM2-220ENST00000622226 FOXD1Q16676 465 aa18.79■□□□□ 0.6
PDLIM2-220ENST00000622226 MAPK8IP2Q13387 824 aaPredicted RBP18.78■□□□□ 0.6
PDLIM2-220ENST00000622226 FAM161AQ3B820 660 aa18.78■□□□□ 0.6
PDLIM2-220ENST00000622226 IFT57Q9NWB7 429 aa18.78■□□□□ 0.6
PDLIM2-220ENST00000622226 HMMRO75330 724 aa18.78■□□□□ 0.6
PDLIM2-220ENST00000622226 RBM10P98175 930 aaKnown RBP18.77■□□□□ 0.6
PDLIM2-220ENST00000622226 STK31Q9BXU1 1019 aa18.77■□□□□ 0.6
PDLIM2-220ENST00000622226 RUFY1Q96T51 708 aa18.77■□□□□ 0.59
PDLIM2-220ENST00000622226 H0YHG0 523 aa18.76■□□□□ 0.59
PDLIM2-220ENST00000622226 CENPJQ9HC77 1338 aaPredicted RBP18.76■□□□□ 0.59
PDLIM2-220ENST00000622226 HDGFP51858 240 aaKnown RBP18.75■□□□□ 0.59
PDLIM2-220ENST00000622226 SKIDA1Q1XH10 827 aa18.75■□□□□ 0.59
PDLIM2-220ENST00000622226 BCL2L13Q9BXK5 485 aa18.75■□□□□ 0.59
PDLIM2-220ENST00000622226 ANKRD45Q5TZF3 282 aa18.75■□□□□ 0.59
PDLIM2-220ENST00000622226 DHX37Q8IY37 1157 aaKnown RBP18.74■□□□□ 0.59
PDLIM2-220ENST00000622226 MNS1Q8NEH6 495 aa18.74■□□□□ 0.59
PDLIM2-220ENST00000622226 KIF3AQ9Y496 699 aa18.74■□□□□ 0.59
PDLIM2-220ENST00000622226 TPM2P07951 284 aa18.74■□□□□ 0.59
PDLIM2-220ENST00000622226 IPO7O95373 1038 aaKnown RBP18.73■□□□□ 0.59
PDLIM2-220ENST00000622226 HSP90AB3PQ58FF7 597 aa18.73■□□□□ 0.59
PDLIM2-220ENST00000622226 EXOC6Q8TAG9 804 aa18.72■□□□□ 0.59
PDLIM2-220ENST00000622226 AK7Q96M32 723 aa18.72■□□□□ 0.59
PDLIM2-220ENST00000622226 ATP6V1DQ9Y5K8 247 aa18.71■□□□□ 0.59
PDLIM2-220ENST00000622226 GOLGA3Q08378 1498 aa18.71■□□□□ 0.59
PDLIM2-220ENST00000622226 BICD2Q8TD16 824 aa18.71■□□□□ 0.58
PDLIM2-220ENST00000622226 ARGLU1Q9NWB6 273 aaPredicted RBP18.71■□□□□ 0.58
PDLIM2-220ENST00000622226 RDXP35241 583 aaKnown RBP18.7■□□□□ 0.58
PDLIM2-220ENST00000622226 HSP90B2PQ58FF3 399 aa18.7■□□□□ 0.58
PDLIM2-220ENST00000622226 PPP1R1BQ9UD71 204 aaPredicted RBP18.7■□□□□ 0.58
PDLIM2-220ENST00000622226 RRP7AQ9Y3A4 280 aaKnown RBP18.7■□□□□ 0.58
PDLIM2-220ENST00000622226 KANK1Q14678 1352 aa18.7■□□□□ 0.58
PDLIM2-220ENST00000622226 EVA1CP58658 441 aa18.7■□□□□ 0.58
PDLIM2-220ENST00000622226 NAP1L1P55209 391 aaKnown RBP18.69■□□□□ 0.58
PDLIM2-220ENST00000622226 IL27Q8NEV9 243 aa18.69■□□□□ 0.58
PDLIM2-220ENST00000622226 BRPF3Q9ULD4 1205 aa18.69■□□□□ 0.58
PDLIM2-220ENST00000622226 FOSBP53539 338 aa18.69■□□□□ 0.58
PDLIM2-220ENST00000622226 RALBP1Q15311 655 aa18.68■□□□□ 0.58
PDLIM2-220ENST00000622226 CENPQQ7L2Z9 268 aaPredicted RBP18.68■□□□□ 0.58
PDLIM2-220ENST00000622226 CCDC191Q8NCU4 936 aa18.68■□□□□ 0.58
PDLIM2-220ENST00000622226 HDGFL2Q7Z4V5 671 aaPredicted RBP18.68■□□□□ 0.58
PDLIM2-220ENST00000622226 CRBNQ96SW2 442 aa18.68■□□□□ 0.58
PDLIM2-220ENST00000622226 FRAT2O75474 233 aaPredicted RBP18.67■□□□□ 0.58
PDLIM2-220ENST00000622226 ELL2O00472 640 aaPredicted RBP18.66■□□□□ 0.58
PDLIM2-220ENST00000622226 TTLL5Q6EMB2 1281 aa18.66■□□□□ 0.58
PDLIM2-220ENST00000622226 SYTL4Q96C24 671 aaPredicted RBP18.66■□□□□ 0.58
PDLIM2-220ENST00000622226 RNF214Q8ND24 703 aa18.66■□□□□ 0.58
PDLIM2-220ENST00000622226 SPAG9O60271 1321 aaKnown RBP18.65■□□□□ 0.58
PDLIM2-220ENST00000622226 AKAP17AQ02040 695 aaKnown RBP18.65■□□□□ 0.58
PDLIM2-220ENST00000622226 FANCIQ9NVI1 1328 aa18.64■□□□□ 0.58
PDLIM2-220ENST00000622226 CWC15Q9P013 229 aaKnown RBP18.64■□□□□ 0.58
PDLIM2-220ENST00000622226 ACBD3Q9H3P7 528 aa18.64■□□□□ 0.57
PDLIM2-220ENST00000622226 EID1Q9Y6B2 187 aa18.64■□□□□ 0.57
PDLIM2-220ENST00000622226 CCDC66A2RUB6 948 aa18.63■□□□□ 0.57
PDLIM2-220ENST00000622226 NFKBIBQ15653 356 aa18.63■□□□□ 0.57
PDLIM2-220ENST00000622226 CHMP5Q9NZZ3 219 aa18.63■□□□□ 0.57
PDLIM2-220ENST00000622226 VPS37CA5D8V6 355 aaPredicted RBP18.63■□□□□ 0.57
PDLIM2-220ENST00000622226 SASS6Q6UVJ0 657 aa18.63■□□□□ 0.57
PDLIM2-220ENST00000622226 TSPYL1Q9H0U9 437 aa18.63■□□□□ 0.57
PDLIM2-220ENST00000622226 GTF2E1P29083 439 aaPredicted RBP18.62■□□□□ 0.57
PDLIM2-220ENST00000622226 PRKCSHP14314 528 aaPredicted RBP18.62■□□□□ 0.57
PDLIM2-220ENST00000622226 CECR2Q9BXF3 1484 aa18.62■□□□□ 0.57
PDLIM2-220ENST00000622226 CDR1P51861 262 aa18.62■□□□□ 0.57
PDLIM2-220ENST00000622226 NGDNQ8NEJ9 315 aaKnown RBP18.62■□□□□ 0.57
PDLIM2-220ENST00000622226 ROCK2O75116 1388 aaKnown RBP18.61■□□□□ 0.57
PDLIM2-220ENST00000622226 CCNB3Q8WWL7 1395 aa18.61■□□□□ 0.57
PDLIM2-220ENST00000622226 COG6Q9Y2V7 657 aa18.61■□□□□ 0.57
PDLIM2-220ENST00000622226 DIAPH3Q9NSV4 1193 aa18.61■□□□□ 0.57
PDLIM2-220ENST00000622226 NASPP49321 788 aaPredicted RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 179.5 ms