RNA–Protein interactions for RNA: ENST00000622166.1

IGHV3-54-201, Transcript of immunoglobulin heavy variable 3-54 (pseudogene), humanhuman

BASIC

Gene IGHV3-54, Length 353 nt, Biotype IG V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IGHV3-54-201ENST00000622166 KTN1Q86UP2 1357 aaKnown RBP13.15□□□□□ -0.3
IGHV3-54-201ENST00000622166 SMG6Q86US8 1419 aaKnown RBP13.14□□□□□ -0.31
IGHV3-54-201ENST00000622166 RBM19Q9Y4C8 960 aaKnown RBP13.14□□□□□ -0.31
IGHV3-54-201ENST00000622166 SYCP2Q9BX26 1530 aa13.13□□□□□ -0.31
IGHV3-54-201ENST00000622166 CARD11Q9BXL7 1154 aa13.13□□□□□ -0.31
IGHV3-54-201ENST00000622166 ARHGAP5Q13017 1502 aa13.13□□□□□ -0.31
IGHV3-54-201ENST00000622166 ZNF326Q5BKZ1 582 aaKnown RBP13.12□□□□□ -0.31
IGHV3-54-201ENST00000622166 ATP10AO60312 1499 aa13.11□□□□□ -0.31
IGHV3-54-201ENST00000622166 MAGI2Q86UL8 1455 aa13.11□□□□□ -0.31
IGHV3-54-201ENST00000622166 DUOX2Q9NRD8 1548 aa13.11□□□□□ -0.31
IGHV3-54-201ENST00000622166 PRAG1Q86YV5 1406 aa13.11□□□□□ -0.31
IGHV3-54-201ENST00000622166 PLA2R1Q13018 1463 aa13.1□□□□□ -0.31
IGHV3-54-201ENST00000622166 GPRASP1Q5JY77 1395 aa13.1□□□□□ -0.31
IGHV3-54-201ENST00000622166 ANP32EQ9BTT0 268 aa13.1□□□□□ -0.31
IGHV3-54-201ENST00000622166 UHRF1BP1LA0JNW5 1464 aa13.1□□□□□ -0.31
IGHV3-54-201ENST00000622166 CCDC144AA2RUR9 1427 aa13.09□□□□□ -0.31
IGHV3-54-201ENST00000622166 RNF123Q5XPI4 1314 aa13.09□□□□□ -0.31
IGHV3-54-201ENST00000622166 BRD4O60885 1362 aaPredicted RBP13.08□□□□□ -0.31
IGHV3-54-201ENST00000622166 ERBINQ96RT1 1412 aa13.08□□□□□ -0.32
IGHV3-54-201ENST00000622166 IRX6P78412 446 aaPredicted RBP13.08□□□□□ -0.32
IGHV3-54-201ENST00000622166 RALBP1Q15311 655 aa13.08□□□□□ -0.32
IGHV3-54-201ENST00000622166 DCAF11Q8TEB1 546 aa13.08□□□□□ -0.32
IGHV3-54-201ENST00000622166 PNISRQ8TF01 805 aaKnown RBP13.08□□□□□ -0.32
IGHV3-54-201ENST00000622166 EIF2AK4Q9P2K8 1649 aaKnown RBP13.08□□□□□ -0.32
IGHV3-54-201ENST00000622166 LRPPRCP42704 1394 aaKnown RBP13.07□□□□□ -0.32
IGHV3-54-201ENST00000622166 ERCC6L2Q5T890 1561 aa13.07□□□□□ -0.32
IGHV3-54-201ENST00000622166 PLCH2O75038 1416 aa13.07□□□□□ -0.32
IGHV3-54-201ENST00000622166 ST20-MTHFSA0A0A6YYL1 179 aa13.07□□□□□ -0.32
IGHV3-54-201ENST00000622166 A2MP01023 1474 aa13.07□□□□□ -0.32
IGHV3-54-201ENST00000622166 PRDM15P57071 1507 aaPredicted RBP13.07□□□□□ -0.32
IGHV3-54-201ENST00000622166 CLASP1Q7Z460 1538 aa13.07□□□□□ -0.32
IGHV3-54-201ENST00000622166 NUDCQ9Y266 331 aa13.06□□□□□ -0.32
IGHV3-54-201ENST00000622166 KDM2AQ9Y2K7 1162 aa13.06□□□□□ -0.32
IGHV3-54-201ENST00000622166 ZCCHC11Q5TAX3 1644 aaKnown RBP13.06□□□□□ -0.32
IGHV3-54-201ENST00000622166 MYBBP1AQ9BQG0 1328 aaKnown RBP13.05□□□□□ -0.32
IGHV3-54-201ENST00000622166 ABCC1P33527 1531 aa13.04□□□□□ -0.32
IGHV3-54-201ENST00000622166 ARAP3Q8WWN8 1544 aa13.04□□□□□ -0.32
IGHV3-54-201ENST00000622166 POLR3GLQ9BT43 218 aa13.04□□□□□ -0.32
IGHV3-54-201ENST00000622166 FANCIQ9NVI1 1328 aa13.04□□□□□ -0.32
IGHV3-54-201ENST00000622166 RNF17Q9BXT8 1623 aaKnown RBP13.03□□□□□ -0.32
IGHV3-54-201ENST00000622166 COL17A1Q9UMD9 1497 aaPredicted RBP13.03□□□□□ -0.32
IGHV3-54-201ENST00000622166 TMC1Q8TDI8 760 aa13.02□□□□□ -0.33
IGHV3-54-201ENST00000622166 INSRP06213 1382 aa13.02□□□□□ -0.33
IGHV3-54-201ENST00000622166 EFCAB2Q5VUJ9 269 aa13.01□□□□□ -0.33
IGHV3-54-201ENST00000622166 WASHC2CQ9Y4E1 1318 aa13.01□□□□□ -0.33
IGHV3-54-201ENST00000622166 PARD3Q8TEW0 1356 aa13.01□□□□□ -0.33
IGHV3-54-201ENST00000622166 RTEL1-TNFRSF6BF6WH68 1400 aa13.01□□□□□ -0.33
IGHV3-54-201ENST00000622166 ZMYM4Q5VZL5 1548 aa13□□□□□ -0.33
IGHV3-54-201ENST00000622166 PER1O15534 1290 aaPredicted RBP12.98□□□□□ -0.33
IGHV3-54-201ENST00000622166 NBPF1Q3BBV0 1214 aa12.97□□□□□ -0.33
IGHV3-54-201ENST00000622166 NLRP13Q86W25 1043 aa12.97□□□□□ -0.33
IGHV3-54-201ENST00000622166 TESK2Q96S53 571 aa12.97□□□□□ -0.33
IGHV3-54-201ENST00000622166 DEPDC5O75140 1603 aa12.97□□□□□ -0.33
IGHV3-54-201ENST00000622166 TRAPPC8Q9Y2L5 1435 aa12.96□□□□□ -0.33
IGHV3-54-201ENST00000622166 IQGAP1P46940 1657 aa12.96□□□□□ -0.33
IGHV3-54-201ENST00000622166 STAC3Q96MF2 364 aa12.96□□□□□ -0.33
IGHV3-54-201ENST00000622166 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.96□□□□□ -0.33
IGHV3-54-201ENST00000622166 CEP152O94986 1710 aa12.96□□□□□ -0.34
IGHV3-54-201ENST00000622166 SPHKAPQ2M3C7 1700 aa12.96□□□□□ -0.34
IGHV3-54-201ENST00000622166 MADDQ8WXG6 1647 aa12.95□□□□□ -0.34
IGHV3-54-201ENST00000622166 TRPM2O94759 1503 aa12.95□□□□□ -0.34
IGHV3-54-201ENST00000622166 RGL3Q3MIN7 710 aa12.95□□□□□ -0.34
IGHV3-54-201ENST00000622166 B4GALNT3Q6L9W6 998 aa12.95□□□□□ -0.34
IGHV3-54-201ENST00000622166 PTPRTO14522 1441 aa12.95□□□□□ -0.34
IGHV3-54-201ENST00000622166 NEURL4Q96JN8 1562 aa12.94□□□□□ -0.34
IGHV3-54-201ENST00000622166 ZFYVE16Q7Z3T8 1539 aa12.94□□□□□ -0.34
IGHV3-54-201ENST00000622166 TET3O43151 1660 aa12.94□□□□□ -0.34
IGHV3-54-201ENST00000622166 PDE3BQ13370 1112 aa12.94□□□□□ -0.34
IGHV3-54-201ENST00000622166 VWDEQ8N2E2 1590 aa12.94□□□□□ -0.34
IGHV3-54-201ENST00000622166 DISP3Q9P2K9 1392 aa12.94□□□□□ -0.34
IGHV3-54-201ENST00000622166 ABCA9Q8IUA7 1624 aa12.93□□□□□ -0.34
IGHV3-54-201ENST00000622166 MSH5O43196 834 aa12.93□□□□□ -0.34
IGHV3-54-201ENST00000622166 INO80Q9ULG1 1556 aaPredicted RBP12.93□□□□□ -0.34
IGHV3-54-201ENST00000622166 KIAA1210Q9ULL0 1709 aa12.93□□□□□ -0.34
IGHV3-54-201ENST00000622166 TMF1P82094 1093 aa12.92□□□□□ -0.34
IGHV3-54-201ENST00000622166 SCAPERQ9BY12 1400 aa12.92□□□□□ -0.34
IGHV3-54-201ENST00000622166 SPAG9O60271 1321 aaKnown RBP12.91□□□□□ -0.34
IGHV3-54-201ENST00000622166 BLMP54132 1417 aaPredicted RBP12.91□□□□□ -0.34
IGHV3-54-201ENST00000622166 CNGB1Q14028 1251 aaPredicted RBP12.91□□□□□ -0.34
IGHV3-54-201ENST00000622166 CLTCL1P53675 1640 aa12.91□□□□□ -0.34
IGHV3-54-201ENST00000622166 WDR7Q9Y4E6 1490 aa12.9□□□□□ -0.34
IGHV3-54-201ENST00000622166 ATP7AQ04656 1500 aa12.88□□□□□ -0.35
IGHV3-54-201ENST00000622166 PANK3Q9H999 370 aa12.88□□□□□ -0.35
IGHV3-54-201ENST00000622166 SYNMO15061 1565 aa12.87□□□□□ -0.35
IGHV3-54-201ENST00000622166 SCAF11Q99590 1463 aaKnown RBP12.87□□□□□ -0.35
IGHV3-54-201ENST00000622166 RRP1P56182 461 aaKnown RBP12.86□□□□□ -0.35
IGHV3-54-201ENST00000622166 CCDC136Q96JN2 1154 aa12.86□□□□□ -0.35
IGHV3-54-201ENST00000622166 KANK1Q14678 1352 aa12.85□□□□□ -0.35
IGHV3-54-201ENST00000622166 MROH1Q8NDA8 1641 aa12.84□□□□□ -0.35
IGHV3-54-201ENST00000622166 CDCA8Q53HL2 280 aa12.84□□□□□ -0.35
IGHV3-54-201ENST00000622166 RCAN3Q9UKA8 241 aa12.84□□□□□ -0.35
IGHV3-54-201ENST00000622166 FANCAO15360 1455 aa12.84□□□□□ -0.35
IGHV3-54-201ENST00000622166 MYOM2P54296 1465 aa12.84□□□□□ -0.35
IGHV3-54-201ENST00000622166 NPC1L1Q9UHC9 1359 aa12.83□□□□□ -0.36
IGHV3-54-201ENST00000622166 AFAP1Q8N556 730 aa12.83□□□□□ -0.36
IGHV3-54-201ENST00000622166 MYOM1P52179 1685 aa12.83□□□□□ -0.36
IGHV3-54-201ENST00000622166 IFT172Q9UG01 1749 aa12.82□□□□□ -0.36
IGHV3-54-201ENST00000622166 LMTK2Q8IWU2 1503 aa12.82□□□□□ -0.36
IGHV3-54-201ENST00000622166 KIF1BO60333 1816 aa12.81□□□□□ -0.36
IGHV3-54-201ENST00000622166 MAP3K4Q9Y6R4 1608 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms