RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 SAMD9LQ8IVG5 1584 aa14.62□□□□□ -0.07
VPS11-208ENST00000621676 PZPP20742 1482 aa14.61□□□□□ -0.07
VPS11-208ENST00000621676 TRAK1Q9UPV9 953 aa14.61□□□□□ -0.07
VPS11-208ENST00000621676 CCDC144AA2RUR9 1427 aa14.61□□□□□ -0.07
VPS11-208ENST00000621676 TNNT2P45379 298 aaPredicted RBP14.61□□□□□ -0.07
VPS11-208ENST00000621676 CDC42BPAQ5VT25 1732 aa14.61□□□□□ -0.07
VPS11-208ENST00000621676 IRX6P78412 446 aaPredicted RBP14.61□□□□□ -0.07
VPS11-208ENST00000621676 KDM5BQ9UGL1 1544 aa14.6□□□□□ -0.07
VPS11-208ENST00000621676 ROCK2O75116 1388 aaKnown RBP14.6□□□□□ -0.07
VPS11-208ENST00000621676 KIAA1107Q9UPP5 1409 aa14.6□□□□□ -0.07
VPS11-208ENST00000621676 NUTM2FA1L443 756 aa14.59□□□□□ -0.07
VPS11-208ENST00000621676 DNMT1P26358 1616 aaKnown RBP14.59□□□□□ -0.07
VPS11-208ENST00000621676 HNRNPUQ00839 825 aaKnown RBP eCLIP14.58□□□□□ -0.07
VPS11-208ENST00000621676 TMC1Q8TDI8 760 aa14.57□□□□□ -0.08
VPS11-208ENST00000621676 MRS2Q9HD23 443 aa14.56□□□□□ -0.08
VPS11-208ENST00000621676 KIF7Q2M1P5 1343 aa14.56□□□□□ -0.08
VPS11-208ENST00000621676 CDC42BPBQ9Y5S2 1711 aa14.55□□□□□ -0.08
VPS11-208ENST00000621676 USP47Q96K76 1375 aa14.55□□□□□ -0.08
VPS11-208ENST00000621676 TIMELESSQ9UNS1 1208 aa14.54□□□□□ -0.08
VPS11-208ENST00000621676 TSPOAP1O95153 1857 aa14.54□□□□□ -0.08
VPS11-208ENST00000621676 SHROOM2Q13796 1616 aa14.53□□□□□ -0.08
VPS11-208ENST00000621676 ADGRF5Q8IZF2 1346 aa14.53□□□□□ -0.08
VPS11-208ENST00000621676 YEATS2Q9ULM3 1422 aa14.53□□□□□ -0.08
VPS11-208ENST00000621676 RBM33Q96EV2 1170 aaKnown RBP14.52□□□□□ -0.08
VPS11-208ENST00000621676 KANK1Q14678 1352 aa14.52□□□□□ -0.08
VPS11-208ENST00000621676 IDI1Q13907 227 aa14.51□□□□□ -0.09
VPS11-208ENST00000621676 ITSN2Q9NZM3 1697 aa14.49□□□□□ -0.09
VPS11-208ENST00000621676 RPRD2Q5VT52 1461 aaKnown RBP14.49□□□□□ -0.09
VPS11-208ENST00000621676 UGGT1Q9NYU2 1555 aa14.48□□□□□ -0.09
VPS11-208ENST00000621676 FAM135AQ9P2D6 1515 aa14.47□□□□□ -0.09
VPS11-208ENST00000621676 DHX29Q7Z478 1369 aaKnown RBP14.45□□□□□ -0.1
VPS11-208ENST00000621676 PANK3Q9H999 370 aa14.44□□□□□ -0.1
VPS11-208ENST00000621676 UHRF1BP1LA0JNW5 1464 aa14.44□□□□□ -0.1
VPS11-208ENST00000621676 PLA2R1Q13018 1463 aa14.44□□□□□ -0.1
VPS11-208ENST00000621676 SOX12O15370 315 aa14.43□□□□□ -0.1
VPS11-208ENST00000621676 PREX2Q70Z35 1606 aa14.43□□□□□ -0.1
VPS11-208ENST00000621676 CCDC7Q96M83 1385 aa14.43□□□□□ -0.1
VPS11-208ENST00000621676 MYO5CQ9NQX4 1742 aa14.42□□□□□ -0.1
VPS11-208ENST00000621676 MINK1Q8N4C8 1332 aaPredicted RBP14.42□□□□□ -0.1
VPS11-208ENST00000621676 RIMBP3CA6NJZ7 1639 aa14.41□□□□□ -0.1
VPS11-208ENST00000621676 RIMBP3BA6NNM3 1639 aa14.41□□□□□ -0.1
VPS11-208ENST00000621676 RIMBP3Q9UFD9 1639 aa14.41□□□□□ -0.1
VPS11-208ENST00000621676 PRKRIP1Q9H875 184 aaPredicted RBP14.41□□□□□ -0.1
VPS11-208ENST00000621676 A2MP01023 1474 aa14.41□□□□□ -0.1
VPS11-208ENST00000621676 ADGRL2O95490 1459 aa14.41□□□□□ -0.1
VPS11-208ENST00000621676 SLC26A8Q96RN1 970 aa14.4□□□□□ -0.1
VPS11-208ENST00000621676 FBLN1P23142 703 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 CABP2Q9NPB3 220 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 WAPLQ7Z5K2 1190 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 POGKQ9P215 609 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 ERBINQ96RT1 1412 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 TEX14Q8IWB6 1497 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 ABCC1P33527 1531 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 GCC2Q8IWJ2 1684 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 PPM1GO15355 546 aaPredicted RBP14.38□□□□□ -0.11
VPS11-208ENST00000621676 FKBP8Q14318 412 aa14.38□□□□□ -0.11
VPS11-208ENST00000621676 COL17A1Q9UMD9 1497 aaPredicted RBP14.38□□□□□ -0.11
VPS11-208ENST00000621676 SLC12A5Q9H2X9 1139 aa14.37□□□□□ -0.11
VPS11-208ENST00000621676 SRPK2P78362 688 aaKnown RBP14.37□□□□□ -0.11
VPS11-208ENST00000621676 ATP7AQ04656 1500 aa14.36□□□□□ -0.11
VPS11-208ENST00000621676 NEUROD2Q15784 382 aa14.36□□□□□ -0.11
VPS11-208ENST00000621676 TMF1P82094 1093 aa14.35□□□□□ -0.11
VPS11-208ENST00000621676 ZNF518AQ6AHZ1 1483 aa14.35□□□□□ -0.11
VPS11-208ENST00000621676 DISP3Q9P2K9 1392 aa14.34□□□□□ -0.11
VPS11-208ENST00000621676 SUPT16HQ9Y5B9 1047 aaKnown RBP14.34□□□□□ -0.11
VPS11-208ENST00000621676 NCKAP5LQ9HCH0 1330 aa14.34□□□□□ -0.11
VPS11-208ENST00000621676 TXNDC2Q86VQ3 553 aa14.33□□□□□ -0.11
VPS11-208ENST00000621676 DUOX2Q9NRD8 1548 aa14.33□□□□□ -0.12
VPS11-208ENST00000621676 SHANK2Q9UPX8 1470 aa14.33□□□□□ -0.12
VPS11-208ENST00000621676 NOS1P29475 1434 aa14.33□□□□□ -0.12
VPS11-208ENST00000621676 POGZQ7Z3K3 1410 aa14.32□□□□□ -0.12
VPS11-208ENST00000621676 KNSTRNQ9Y448 316 aa14.32□□□□□ -0.12
VPS11-208ENST00000621676 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.31□□□□□ -0.12
VPS11-208ENST00000621676 CCDC146Q8IYE0 955 aa14.3□□□□□ -0.12
VPS11-208ENST00000621676 NPATQ14207 1427 aa14.3□□□□□ -0.12
VPS11-208ENST00000621676 ZFYVE16Q7Z3T8 1539 aa14.3□□□□□ -0.12
VPS11-208ENST00000621676 PRAM1Q96QH2 718 aa14.3□□□□□ -0.12
VPS11-208ENST00000621676 TESK2Q96S53 571 aa14.3□□□□□ -0.12
VPS11-208ENST00000621676 ARHGEF5Q12774 1597 aa14.29□□□□□ -0.12
VPS11-208ENST00000621676 ATP10AO60312 1499 aa14.27□□□□□ -0.13
VPS11-208ENST00000621676 ADGBQ8N7X0 1667 aa14.26□□□□□ -0.13
VPS11-208ENST00000621676 PRAG1Q86YV5 1406 aa14.26□□□□□ -0.13
VPS11-208ENST00000621676 ZBTB7CA1YPR0 619 aa14.25□□□□□ -0.13
VPS11-208ENST00000621676 VGFO15240 615 aaPredicted RBP14.25□□□□□ -0.13
VPS11-208ENST00000621676 CROCC2H7BZ55 1655 aa14.24□□□□□ -0.13
VPS11-208ENST00000621676 PRDM15P57071 1507 aaPredicted RBP14.24□□□□□ -0.13
VPS11-208ENST00000621676 RTEL1-TNFRSF6BF6WH68 1400 aa14.24□□□□□ -0.13
VPS11-208ENST00000621676 ABCA9Q8IUA7 1624 aa14.23□□□□□ -0.13
VPS11-208ENST00000621676 C14orf37Q86TY3 774 aa14.23□□□□□ -0.13
VPS11-208ENST00000621676 GGNBP2Q9H3C7 697 aa14.23□□□□□ -0.13
VPS11-208ENST00000621676 NUTM2GQ5VZR2 741 aa14.23□□□□□ -0.13
VPS11-208ENST00000621676 RRP7AQ9Y3A4 280 aaKnown RBP14.23□□□□□ -0.13
VPS11-208ENST00000621676 CNTLNQ9NXG0 1405 aa14.22□□□□□ -0.13
VPS11-208ENST00000621676 CENPJQ9HC77 1338 aaPredicted RBP14.22□□□□□ -0.13
VPS11-208ENST00000621676 NEFLP07196 543 aa14.21□□□□□ -0.13
VPS11-208ENST00000621676 SPATA31E1Q6ZUB1 1445 aa14.21□□□□□ -0.14
VPS11-208ENST00000621676 BCL11AQ9H165 835 aa14.21□□□□□ -0.14
VPS11-208ENST00000621676 LMOD2Q6P5Q4 547 aa14.19□□□□□ -0.14
VPS11-208ENST00000621676 PMFBP1Q8TBY8 1022 aa14.19□□□□□ -0.14
VPS11-208ENST00000621676 ZMYM3Q14202 1370 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 8925.6 ms