RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 CENPQQ7L2Z9 268 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-214ENST00000620676 PRPF40AO75400 957 aaKnown RBP6.26□□□□□ -1.41
VPS13D-214ENST00000620676 PLCD4Q9BRC7 762 aa6.26□□□□□ -1.41
VPS13D-214ENST00000620676 FGD1P98174 961 aa6.26□□□□□ -1.41
VPS13D-214ENST00000620676 SETQ01105 290 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-214ENST00000620676 SKOR2Q2VWA4 1001 aaPredicted RBP6.26□□□□□ -1.41
VPS13D-214ENST00000620676 FOSBP53539 338 aa6.25□□□□□ -1.41
VPS13D-214ENST00000620676 TPD52L1Q16890 204 aaPredicted RBP6.25□□□□□ -1.41
VPS13D-214ENST00000620676 TTLL5Q6EMB2 1281 aa6.25□□□□□ -1.41
VPS13D-214ENST00000620676 CCDC39Q9UFE4 941 aa6.25□□□□□ -1.41
VPS13D-214ENST00000620676 HSP90AB3PQ58FF7 597 aa6.25□□□□□ -1.41
VPS13D-214ENST00000620676 SRRTQ9BXP5 876 aaKnown RBP6.25□□□□□ -1.41
VPS13D-214ENST00000620676 NOC3LQ8WTT2 800 aaKnown RBP6.25□□□□□ -1.41
VPS13D-214ENST00000620676 HSP90B1P14625 803 aaKnown RBP6.24□□□□□ -1.41
VPS13D-214ENST00000620676 SYAP1Q96A49 352 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-214ENST00000620676 MAP7D2Q96T17 732 aa6.24□□□□□ -1.41
VPS13D-214ENST00000620676 ZNF830Q96NB3 372 aaPredicted RBP6.24□□□□□ -1.41
VPS13D-214ENST00000620676 RAB3GAP2Q9H2M9 1393 aa6.24□□□□□ -1.41
VPS13D-214ENST00000620676 CALRP27797 417 aaKnown RBP6.24□□□□□ -1.41
VPS13D-214ENST00000620676 TOMM22Q9NS69 142 aa6.24□□□□□ -1.41
VPS13D-214ENST00000620676 CHMP5Q9NZZ3 219 aa6.24□□□□□ -1.41
VPS13D-214ENST00000620676 IRX3P78415 501 aaPredicted RBP6.23□□□□□ -1.41
VPS13D-214ENST00000620676 PLPPR3Q6T4P5 718 aa6.23□□□□□ -1.41
VPS13D-214ENST00000620676 ZBED9Q6R2W3 1325 aa6.23□□□□□ -1.41
VPS13D-214ENST00000620676 POLR3GO15318 223 aaPredicted RBP6.23□□□□□ -1.41
VPS13D-214ENST00000620676 FBLN2P98095 1184 aa6.23□□□□□ -1.41
VPS13D-214ENST00000620676 CCDC173Q0VFZ6 552 aa6.23□□□□□ -1.41
VPS13D-214ENST00000620676 C22orf23Q9BZE7 217 aa6.23□□□□□ -1.41
VPS13D-214ENST00000620676 OS9Q13438 667 aaPredicted RBP6.23□□□□□ -1.41
VPS13D-214ENST00000620676 XRCC6P12956 609 aaKnown RBP eCLIP6.23□□□□□ -1.413e-6■■■■□ 23.1
VPS13D-214ENST00000620676 ANKRD45Q5TZF3 282 aa6.23□□□□□ -1.41
VPS13D-214ENST00000620676 CCDC27Q2M243 656 aa6.22□□□□□ -1.41
VPS13D-214ENST00000620676 SRPK2P78362 688 aaKnown RBP6.22□□□□□ -1.41
VPS13D-214ENST00000620676 DHX57Q6P158 1386 aaKnown RBP6.22□□□□□ -1.41
VPS13D-214ENST00000620676 TMX1Q9H3N1 280 aa6.22□□□□□ -1.41
VPS13D-214ENST00000620676 EEA1Q15075 1411 aa6.22□□□□□ -1.41
VPS13D-214ENST00000620676 TEX35Q5T0J7 233 aa6.22□□□□□ -1.41
VPS13D-214ENST00000620676 MCM4P33991 863 aa6.22□□□□□ -1.41
VPS13D-214ENST00000620676 C20orf194Q5TEA3 1177 aa6.22□□□□□ -1.41
VPS13D-214ENST00000620676 TSC1Q92574 1164 aa6.22□□□□□ -1.41
VPS13D-214ENST00000620676 L3MBTL2Q969R5 705 aa6.22□□□□□ -1.41
VPS13D-214ENST00000620676 PDCL2Q8N4E4 241 aa6.21□□□□□ -1.41
VPS13D-214ENST00000620676 HOMER1Q86YM7 354 aa6.21□□□□□ -1.41
VPS13D-214ENST00000620676 PRKRIP1Q9H875 184 aaPredicted RBP6.21□□□□□ -1.42
VPS13D-214ENST00000620676 GTF2F1P35269 517 aaKnown RBP eCLIP6.21□□□□□ -1.42
VPS13D-214ENST00000620676 TSPY26PQ9H489 355 aa6.21□□□□□ -1.42
VPS13D-214ENST00000620676 PHF14O94880 888 aa6.21□□□□□ -1.42
VPS13D-214ENST00000620676 SOGA1O94964 1423 aa6.21□□□□□ -1.42
VPS13D-214ENST00000620676 C17orf53Q8N3J3 647 aaPredicted RBP6.2□□□□□ -1.42
VPS13D-214ENST00000620676 TRIM6-TRIM34B2RNG4 842 aa6.2□□□□□ -1.42
VPS13D-214ENST00000620676 GOLGA2Q08379 1002 aa6.2□□□□□ -1.42
VPS13D-214ENST00000620676 NRDCO43847 1150 aa6.2□□□□□ -1.42
VPS13D-214ENST00000620676 NOM1Q5C9Z4 860 aaKnown RBP6.2□□□□□ -1.42
VPS13D-214ENST00000620676 KTN1Q86UP2 1357 aaKnown RBP6.2□□□□□ -1.42
VPS13D-214ENST00000620676 CCNB3Q8WWL7 1395 aa6.2□□□□□ -1.42
VPS13D-214ENST00000620676 RBM27Q9P2N5 1060 aaKnown RBP6.2□□□□□ -1.42
VPS13D-214ENST00000620676 ZCCHC6Q5VYS8 1495 aaKnown RBP6.2□□□□□ -1.42
VPS13D-214ENST00000620676 PMFBP1Q8TBY8 1022 aa6.19□□□□□ -1.42
VPS13D-214ENST00000620676 WWC1Q8IX03 1113 aa6.19□□□□□ -1.42
VPS13D-214ENST00000620676 SMC4Q9NTJ3 1288 aa6.19□□□□□ -1.42
VPS13D-214ENST00000620676 CCDC66A2RUB6 948 aa6.19□□□□□ -1.42
VPS13D-214ENST00000620676 SETD5Q9C0A6 1442 aa6.19□□□□□ -1.42
VPS13D-214ENST00000620676 CENPJQ9HC77 1338 aaPredicted RBP6.19□□□□□ -1.42
VPS13D-214ENST00000620676 ZSCAN30Q86W11 494 aa6.18□□□□□ -1.42
VPS13D-214ENST00000620676 GTF2A1P52655 376 aaPredicted RBP6.18□□□□□ -1.42
VPS13D-214ENST00000620676 SASS6Q6UVJ0 657 aa6.18□□□□□ -1.42
VPS13D-214ENST00000620676 TRIM34Q9BYJ4 488 aa6.18□□□□□ -1.42
VPS13D-214ENST00000620676 CCDC9Q9Y3X0 531 aaKnown RBP6.18□□□□□ -1.42
VPS13D-214ENST00000620676 KDM4AO75164 1064 aa6.18□□□□□ -1.42
VPS13D-214ENST00000620676 MTERF4Q7Z6M4 381 aaKnown RBP6.18□□□□□ -1.42
VPS13D-214ENST00000620676 SYCE3A1L190 88 aa6.18□□□□□ -1.42
VPS13D-214ENST00000620676 LNPKQ9C0E8 428 aa6.18□□□□□ -1.42
VPS13D-214ENST00000620676 MCCP23508 829 aa6.18□□□□□ -1.42
VPS13D-214ENST00000620676 KIF3AQ9Y496 699 aa6.18□□□□□ -1.42
VPS13D-214ENST00000620676 MORC1Q86VD1 984 aa6.18□□□□□ -1.42
VPS13D-214ENST00000620676 WASHC2AQ641Q2 1341 aa6.18□□□□□ -1.42
VPS13D-214ENST00000620676 SAFB2Q14151 953 aaKnown RBP eCLIP6.17□□□□□ -1.42
VPS13D-214ENST00000620676 TICAM2Q86XR7 235 aa6.17□□□□□ -1.42
VPS13D-214ENST00000620676 AAMPQ13685 434 aa6.17□□□□□ -1.42
VPS13D-214ENST00000620676 PDILTQ8N807 584 aa6.17□□□□□ -1.42
VPS13D-214ENST00000620676 TNIKQ9UKE5 1360 aa6.17□□□□□ -1.42
VPS13D-214ENST00000620676 ELL2O00472 640 aaPredicted RBP6.17□□□□□ -1.42
VPS13D-214ENST00000620676 CFAP53Q96M91 514 aa6.17□□□□□ -1.42
VPS13D-214ENST00000620676 FAM177A1Q8N128 213 aaPredicted RBP6.17□□□□□ -1.42
VPS13D-214ENST00000620676 FAM193AP78312 1265 aa6.17□□□□□ -1.42
VPS13D-214ENST00000620676 CENPHQ9H3R5 247 aa6.16□□□□□ -1.42
VPS13D-214ENST00000620676 HTATSF1O43719 755 aaKnown RBP6.16□□□□□ -1.42
VPS13D-214ENST00000620676 RALBP1Q15311 655 aa6.16□□□□□ -1.42
VPS13D-214ENST00000620676 NCBP3Q53F19 620 aaKnown RBP6.16□□□□□ -1.42
VPS13D-214ENST00000620676 TIGD1Q96MW7 591 aa6.16□□□□□ -1.42
VPS13D-214ENST00000620676 KIF16BQ96L93 1317 aa6.16□□□□□ -1.42
VPS13D-214ENST00000620676 RILPL2Q969X0 211 aa6.16□□□□□ -1.42
VPS13D-214ENST00000620676 GPS2Q13227 327 aa6.16□□□□□ -1.42
VPS13D-214ENST00000620676 DIAPH3Q9NSV4 1193 aa6.16□□□□□ -1.42
VPS13D-214ENST00000620676 SOX12O15370 315 aa6.16□□□□□ -1.42
VPS13D-214ENST00000620676 RTF1Q92541 710 aaKnown RBP6.15□□□□□ -1.42
VPS13D-214ENST00000620676 BCAR3O75815 825 aa6.15□□□□□ -1.42
VPS13D-214ENST00000620676 APAF1O14727 1248 aa6.15□□□□□ -1.42
VPS13D-214ENST00000620676 MNS1Q8NEH6 495 aa6.15□□□□□ -1.42
VPS13D-214ENST00000620676 TRIM5Q9C035 493 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms