RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 ARAP3Q8WWN8 1544 aa13.73□□□□□ -0.21
VPS11-207ENST00000620429 RRAGDQ9NQL2 400 aaPredicted RBP13.72□□□□□ -0.21
VPS11-207ENST00000620429 RNF123Q5XPI4 1314 aa13.72□□□□□ -0.21
VPS11-207ENST00000620429 FAM9BQ8IZU0 186 aa13.72□□□□□ -0.21
VPS11-207ENST00000620429 DDRGK1Q96HY6 314 aa13.71□□□□□ -0.21
VPS11-207ENST00000620429 CENPJQ9HC77 1338 aaPredicted RBP13.71□□□□□ -0.22
VPS11-207ENST00000620429 EIF4G2P78344 907 aaKnown RBP eCLIP13.7□□□□□ -0.22
VPS11-207ENST00000620429 TCERG1O14776 1098 aaKnown RBP13.7□□□□□ -0.22
VPS11-207ENST00000620429 NPM2Q86SE8 214 aaKnown RBP13.7□□□□□ -0.22
VPS11-207ENST00000620429 FOXD1Q16676 465 aa13.7□□□□□ -0.22
VPS11-207ENST00000620429 COL17A1Q9UMD9 1497 aaPredicted RBP13.69□□□□□ -0.22
VPS11-207ENST00000620429 DENND4BO75064 1496 aaPredicted RBP13.69□□□□□ -0.22
VPS11-207ENST00000620429 ZNF777Q9ULD5 760 aaPredicted RBP13.69□□□□□ -0.22
VPS11-207ENST00000620429 CNTLNQ9NXG0 1405 aa13.69□□□□□ -0.22
VPS11-207ENST00000620429 ABCA9Q8IUA7 1624 aa13.68□□□□□ -0.22
VPS11-207ENST00000620429 ABCC5O15440 1437 aa13.68□□□□□ -0.22
VPS11-207ENST00000620429 DAPK1P53355 1430 aa13.68□□□□□ -0.22
VPS11-207ENST00000620429 TROQ12816 1431 aaPredicted RBP13.68□□□□□ -0.22
VPS11-207ENST00000620429 MRS2Q9HD23 443 aa13.68□□□□□ -0.22
VPS11-207ENST00000620429 CALD1Q05682 793 aaKnown RBP13.68□□□□□ -0.22
VPS11-207ENST00000620429 HECW2Q9P2P5 1572 aa13.67□□□□□ -0.22
VPS11-207ENST00000620429 CD109Q6YHK3 1445 aa13.67□□□□□ -0.22
VPS11-207ENST00000620429 PDIA4P13667 645 aaKnown RBP13.67□□□□□ -0.22
VPS11-207ENST00000620429 BACH2Q9BYV9 841 aa13.67□□□□□ -0.22
VPS11-207ENST00000620429 KIF14Q15058 1648 aa13.67□□□□□ -0.22
VPS11-207ENST00000620429 PDE4AP27815 886 aa13.67□□□□□ -0.22
VPS11-207ENST00000620429 PRKRIP1Q9H875 184 aaPredicted RBP13.67□□□□□ -0.22
VPS11-207ENST00000620429 SMG6Q86US8 1419 aaKnown RBP13.66□□□□□ -0.22
VPS11-207ENST00000620429 MS4A1P11836 297 aa13.66□□□□□ -0.22
VPS11-207ENST00000620429 NAP1L5Q96NT1 182 aaPredicted RBP13.66□□□□□ -0.22
VPS11-207ENST00000620429 CFDP1Q9UEE9 299 aaPredicted RBP13.66□□□□□ -0.22
VPS11-207ENST00000620429 PRDM4Q9UKN5 801 aa13.66□□□□□ -0.22
VPS11-207ENST00000620429 GCC2Q8IWJ2 1684 aa13.66□□□□□ -0.22
VPS11-207ENST00000620429 MPHOSPH9Q99550 1183 aa13.65□□□□□ -0.22
VPS11-207ENST00000620429 NEO1Q92859 1461 aa13.65□□□□□ -0.22
VPS11-207ENST00000620429 CLCN1P35523 988 aa13.64□□□□□ -0.23
VPS11-207ENST00000620429 GPATCH8Q9UKJ3 1502 aaKnown RBP13.64□□□□□ -0.23
VPS11-207ENST00000620429 AKNAQ7Z591 1439 aa13.64□□□□□ -0.23
VPS11-207ENST00000620429 PNNQ9H307 717 aaKnown RBP13.63□□□□□ -0.23
VPS11-207ENST00000620429 CFAP74Q9C0B2 1584 aa13.62□□□□□ -0.23
VPS11-207ENST00000620429 CCDC7Q96M83 1385 aa13.62□□□□□ -0.23
VPS11-207ENST00000620429 ATP10BO94823 1461 aa13.62□□□□□ -0.23
VPS11-207ENST00000620429 CAMSAP2Q08AD1 1489 aa13.62□□□□□ -0.23
VPS11-207ENST00000620429 DNMT1P26358 1616 aaKnown RBP13.62□□□□□ -0.23
VPS11-207ENST00000620429 ADAMTSL3P82987 1691 aa13.61□□□□□ -0.23
VPS11-207ENST00000620429 PLEKHD1A6NEE1 506 aa13.61□□□□□ -0.23
VPS11-207ENST00000620429 L3MBTL2Q969R5 705 aa13.61□□□□□ -0.23
VPS11-207ENST00000620429 NCOA1Q15788 1441 aa13.6□□□□□ -0.23
VPS11-207ENST00000620429 PDCL3Q9H2J4 239 aa13.6□□□□□ -0.23
VPS11-207ENST00000620429 ROCK1Q13464 1354 aa13.59□□□□□ -0.23
VPS11-207ENST00000620429 L1TD1Q5T7N2 865 aaKnown RBP13.57□□□□□ -0.24
VPS11-207ENST00000620429 BCL11BQ9C0K0 894 aaPredicted RBP13.57□□□□□ -0.24
VPS11-207ENST00000620429 SLC4A1APQ9BWU0 796 aaKnown RBP13.56□□□□□ -0.24
VPS11-207ENST00000620429 NUDCQ9Y266 331 aa13.55□□□□□ -0.24
VPS11-207ENST00000620429 BCORL1Q5H9F3 1711 aa13.55□□□□□ -0.24
VPS11-207ENST00000620429 FRAT2O75474 233 aaPredicted RBP13.54□□□□□ -0.24
VPS11-207ENST00000620429 CNGB1Q14028 1251 aaPredicted RBP13.54□□□□□ -0.24
VPS11-207ENST00000620429 ILDR1Q86SU0 546 aaPredicted RBP13.54□□□□□ -0.24
VPS11-207ENST00000620429 KIF7Q2M1P5 1343 aa13.54□□□□□ -0.24
VPS11-207ENST00000620429 ITSN2Q9NZM3 1697 aa13.54□□□□□ -0.24
VPS11-207ENST00000620429 NBPF8Q3BBV2 869 aa13.53□□□□□ -0.24
VPS11-207ENST00000620429 ANKRD30BQ9BXX2 1392 aa13.53□□□□□ -0.24
VPS11-207ENST00000620429 HNRNPMP52272 730 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS11-207ENST00000620429 ZMYM4Q5VZL5 1548 aa13.52□□□□□ -0.24
VPS11-207ENST00000620429 ARHGEF40Q8TER5 1519 aa13.52□□□□□ -0.25
VPS11-207ENST00000620429 TPM2P07951 284 aa13.51□□□□□ -0.25
VPS11-207ENST00000620429 CDC42BPAQ5VT25 1732 aa13.51□□□□□ -0.25
VPS11-207ENST00000620429 PZPP20742 1482 aa13.5□□□□□ -0.25
VPS11-207ENST00000620429 MAGI2Q86UL8 1455 aa13.5□□□□□ -0.25
VPS11-207ENST00000620429 FRMPD1Q5SYB0 1578 aa13.5□□□□□ -0.25
VPS11-207ENST00000620429 RGS3P49796 1198 aa13.5□□□□□ -0.25
VPS11-207ENST00000620429 RICTORQ6R327 1708 aa13.49□□□□□ -0.25
VPS11-207ENST00000620429 PTPRMP28827 1452 aa13.49□□□□□ -0.25
VPS11-207ENST00000620429 TAF7LQ5H9L4 462 aa13.48□□□□□ -0.25
VPS11-207ENST00000620429 POLR3GLQ9BT43 218 aa13.48□□□□□ -0.25
VPS11-207ENST00000620429 ANKRD30AQ9BXX3 1397 aa13.48□□□□□ -0.25
VPS11-207ENST00000620429 ADGRL2O95490 1459 aa13.48□□□□□ -0.25
VPS11-207ENST00000620429 SENP3-EIF4A1A0A087X0R7 540 aa13.48□□□□□ -0.25
VPS11-207ENST00000620429 CROCC2H7BZ55 1655 aa13.47□□□□□ -0.25
VPS11-207ENST00000620429 RPRD2Q5VT52 1461 aaKnown RBP13.47□□□□□ -0.25
VPS11-207ENST00000620429 C9orf84Q5VXU9 1444 aa13.47□□□□□ -0.25
VPS11-207ENST00000620429 SPATA31E1Q6ZUB1 1445 aa13.47□□□□□ -0.25
VPS11-207ENST00000620429 ANKRD50Q9ULJ7 1429 aa13.46□□□□□ -0.25
VPS11-207ENST00000620429 PKD2Q13563 968 aa13.46□□□□□ -0.25
VPS11-207ENST00000620429 ADGBQ8N7X0 1667 aa13.46□□□□□ -0.25
VPS11-207ENST00000620429 POLR1AO95602 1720 aaPredicted RBP13.45□□□□□ -0.26
VPS11-207ENST00000620429 POGZQ7Z3K3 1410 aa13.45□□□□□ -0.26
VPS11-207ENST00000620429 TSPY4P0CV99 314 aa13.44□□□□□ -0.26
VPS11-207ENST00000620429 TSPY10P0CW01 314 aa13.44□□□□□ -0.26
VPS11-207ENST00000620429 FBXO41Q8TF61 875 aa13.44□□□□□ -0.26
VPS11-207ENST00000620429 FANCAO15360 1455 aa13.44□□□□□ -0.26
VPS11-207ENST00000620429 SLC4A3P48751 1232 aa13.44□□□□□ -0.26
VPS11-207ENST00000620429 POGKQ9P215 609 aa13.44□□□□□ -0.26
VPS11-207ENST00000620429 MBD5Q9P267 1494 aa13.43□□□□□ -0.26
VPS11-207ENST00000620429 DHX29Q7Z478 1369 aaKnown RBP13.43□□□□□ -0.26
VPS11-207ENST00000620429 NUP155O75694 1391 aa13.42□□□□□ -0.26
VPS11-207ENST00000620429 MADDQ8WXG6 1647 aa13.42□□□□□ -0.26
VPS11-207ENST00000620429 SAMD9LQ8IVG5 1584 aa13.42□□□□□ -0.26
VPS11-207ENST00000620429 KIF15Q9NS87 1388 aa13.42□□□□□ -0.26
VPS11-207ENST00000620429 KIAA1107Q9UPP5 1409 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms