RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 HNRNPUL2Q1KMD3 747 aaKnown RBP7.81□□□□□ -1.16
SNCA-213ENST00000618500 MAST1Q9Y2H9 1570 aa7.81□□□□□ -1.16
SNCA-213ENST00000618500 GPATCH8Q9UKJ3 1502 aaKnown RBP7.8□□□□□ -1.16
SNCA-213ENST00000618500 ARID3CA6NKF2 412 aa7.8□□□□□ -1.16
SNCA-213ENST00000618500 ARHGEF5Q12774 1597 aa7.8□□□□□ -1.16
SNCA-213ENST00000618500 MLECQ14165 292 aa7.8□□□□□ -1.16
SNCA-213ENST00000618500 UBR1Q8IWV7 1749 aa7.79□□□□□ -1.16
SNCA-213ENST00000618500 ADRA2BP18089 450 aa7.78□□□□□ -1.16
SNCA-213ENST00000618500 TIAM1Q13009 1591 aa7.78□□□□□ -1.16
SNCA-213ENST00000618500 ZNF335Q9H4Z2 1342 aaPredicted RBP7.78□□□□□ -1.16
SNCA-213ENST00000618500 NWD1Q149M9 1564 aa7.78□□□□□ -1.16
SNCA-213ENST00000618500 EHBP1L1Q8N3D4 1523 aa7.77□□□□□ -1.16
SNCA-213ENST00000618500 LRRC7Q96NW7 1537 aa7.77□□□□□ -1.16
SNCA-213ENST00000618500 UBAP1LF5GYI3 381 aa7.77□□□□□ -1.17
SNCA-213ENST00000618500 AFAP1Q8N556 730 aa7.77□□□□□ -1.17
SNCA-213ENST00000618500 ESF1Q9H501 851 aaKnown RBP7.77□□□□□ -1.17
SNCA-213ENST00000618500 LRRC9Q6ZRR7 1453 aa7.77□□□□□ -1.17
SNCA-213ENST00000618500 SLIT1O75093 1534 aa7.77□□□□□ -1.17
SNCA-213ENST00000618500 MBD5Q9P267 1494 aa7.76□□□□□ -1.17
SNCA-213ENST00000618500 TOM1O60784 492 aa7.76□□□□□ -1.17
SNCA-213ENST00000618500 NPHP4O75161 1426 aaPredicted RBP7.76□□□□□ -1.17
SNCA-213ENST00000618500 ARHGAP23Q9P227 1491 aa7.76□□□□□ -1.17
SNCA-213ENST00000618500 UGGT1Q9NYU2 1555 aa7.76□□□□□ -1.17
SNCA-213ENST00000618500 NCKAP5LQ9HCH0 1330 aa7.75□□□□□ -1.17
SNCA-213ENST00000618500 TNRQ92752 1358 aa7.75□□□□□ -1.17
SNCA-213ENST00000618500 MROH1Q8NDA8 1641 aa7.74□□□□□ -1.17
SNCA-213ENST00000618500 SETD1AO15047 1707 aaKnown RBP7.74□□□□□ -1.17
SNCA-213ENST00000618500 DHX29Q7Z478 1369 aaKnown RBP7.73□□□□□ -1.17
SNCA-213ENST00000618500 SPAG9O60271 1321 aaKnown RBP7.73□□□□□ -1.17
SNCA-213ENST00000618500 HSPA1LP34931 641 aa7.73□□□□□ -1.17
SNCA-213ENST00000618500 ABCC3O15438 1527 aa7.73□□□□□ -1.17
SNCA-213ENST00000618500 CEP162Q5TB80 1403 aa7.72□□□□□ -1.17
SNCA-213ENST00000618500 CCDC141Q6ZP82 1450 aa7.72□□□□□ -1.17
SNCA-213ENST00000618500 SHPRHQ149N8 1683 aa7.72□□□□□ -1.17
SNCA-213ENST00000618500 FAM135BQ49AJ0 1406 aa7.72□□□□□ -1.17
SNCA-213ENST00000618500 PRDM15P57071 1507 aaPredicted RBP7.71□□□□□ -1.18
SNCA-213ENST00000618500 ERVK-7P63135 1459 aa7.71□□□□□ -1.18
SNCA-213ENST00000618500 MIA2Q96PC5 1412 aa7.71□□□□□ -1.18
SNCA-213ENST00000618500 CROCC2H7BZ55 1655 aa7.71□□□□□ -1.18
SNCA-213ENST00000618500 NKTRP30414 1462 aaKnown RBP7.7□□□□□ -1.18
SNCA-213ENST00000618500 NCOA2Q15596 1464 aa7.7□□□□□ -1.18
SNCA-213ENST00000618500 ARHGAP31Q2M1Z3 1444 aa7.7□□□□□ -1.18
SNCA-213ENST00000618500 MAP3K1Q13233 1512 aa7.7□□□□□ -1.18
SNCA-213ENST00000618500 ROBO1Q9Y6N7 1651 aa7.7□□□□□ -1.18
SNCA-213ENST00000618500 CEP152O94986 1710 aa7.69□□□□□ -1.18
SNCA-213ENST00000618500 CDK12Q9NYV4 1490 aaPredicted RBP7.69□□□□□ -1.18
SNCA-213ENST00000618500 SCAF11Q99590 1463 aaKnown RBP7.69□□□□□ -1.18
SNCA-213ENST00000618500 LMTK2Q8IWU2 1503 aa7.68□□□□□ -1.18
SNCA-213ENST00000618500 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.68□□□□□ -1.18
SNCA-213ENST00000618500 TET3O43151 1660 aa7.68□□□□□ -1.18
SNCA-213ENST00000618500 PHLPP1O60346 1717 aa7.68□□□□□ -1.18
SNCA-213ENST00000618500 COL16A1Q07092 1604 aaPredicted RBP7.67□□□□□ -1.18
SNCA-213ENST00000618500 AHDC1Q5TGY3 1603 aaPredicted RBP7.67□□□□□ -1.18
SNCA-213ENST00000618500 RSPH4AQ5TD94 716 aa7.67□□□□□ -1.18
SNCA-213ENST00000618500 ANKLE2Q86XL3 938 aa7.67□□□□□ -1.18
SNCA-213ENST00000618500 THEMISQ8N1K5 641 aaPredicted RBP7.67□□□□□ -1.18
SNCA-213ENST00000618500 CCNB3Q8WWL7 1395 aa7.66□□□□□ -1.18
SNCA-213ENST00000618500 NCOA3Q9Y6Q9 1424 aa7.66□□□□□ -1.18
SNCA-213ENST00000618500 DIP2AQ14689 1571 aa7.66□□□□□ -1.18
SNCA-213ENST00000618500 PIK3C2BO00750 1634 aa7.66□□□□□ -1.18
SNCA-213ENST00000618500 PTPN23Q9H3S7 1636 aa7.65□□□□□ -1.18
SNCA-213ENST00000618500 DUOX2Q9NRD8 1548 aa7.65□□□□□ -1.18
SNCA-213ENST00000618500 CHD2O14647 1828 aaKnown RBP7.65□□□□□ -1.18
SNCA-213ENST00000618500 FGD6Q6ZV73 1430 aa7.64□□□□□ -1.19
SNCA-213ENST00000618500 RGS17Q9UGC6 210 aaPredicted RBP7.64□□□□□ -1.19
SNCA-213ENST00000618500 ADGRB3O60242 1522 aa7.64□□□□□ -1.19
SNCA-213ENST00000618500 LAMC1P11047 1609 aa7.64□□□□□ -1.19
SNCA-213ENST00000618500 CACNB1Q02641 598 aaPredicted RBP7.63□□□□□ -1.19
SNCA-213ENST00000618500 MYT1LQ9UL68 1186 aa7.62□□□□□ -1.19
SNCA-213ENST00000618500 ERBINQ96RT1 1412 aa7.62□□□□□ -1.19
SNCA-213ENST00000618500 NHSL1Q5SYE7 1610 aa7.61□□□□□ -1.19
SNCA-213ENST00000618500 EFCAB6Q5THR3 1501 aa7.61□□□□□ -1.19
SNCA-213ENST00000618500 HNRNPMP52272 730 aaKnown RBP eCLIP7.6□□□□□ -1.19
SNCA-213ENST00000618500 CFDP1Q9UEE9 299 aaPredicted RBP7.6□□□□□ -1.19
SNCA-213ENST00000618500 PIP4K2BP78356 416 aa7.59□□□□□ -1.19
SNCA-213ENST00000618500 GCC2Q8IWJ2 1684 aa7.59□□□□□ -1.19
SNCA-213ENST00000618500 MTUS2Q5JR59 1369 aa7.58□□□□□ -1.2
SNCA-213ENST00000618500 JCADQ9P266 1359 aa7.58□□□□□ -1.2
SNCA-213ENST00000618500 RPRD2Q5VT52 1461 aaKnown RBP7.58□□□□□ -1.2
SNCA-213ENST00000618500 GGT6Q6P531 493 aa7.57□□□□□ -1.2
SNCA-213ENST00000618500 TMEM2Q9UHN6 1383 aa7.57□□□□□ -1.2
SNCA-213ENST00000618500 SPATA31A6Q5VVP1 1343 aa7.56□□□□□ -1.2
SNCA-213ENST00000618500 IQGAP3Q86VI3 1631 aa7.56□□□□□ -1.2
SNCA-213ENST00000618500 NOS1P29475 1434 aa7.56□□□□□ -1.2
SNCA-213ENST00000618500 DCCP43146 1447 aa7.56□□□□□ -1.2
SNCA-213ENST00000618500 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.56□□□□□ -1.2
SNCA-213ENST00000618500 WASHC2CQ9Y4E1 1318 aa7.56□□□□□ -1.2
SNCA-213ENST00000618500 XRN1Q8IZH2 1706 aaKnown RBP7.56□□□□□ -1.2
SNCA-213ENST00000618500 LRP5O75197 1615 aa7.56□□□□□ -1.2
SNCA-213ENST00000618500 LRP6O75581 1613 aa7.55□□□□□ -1.2
SNCA-213ENST00000618500 FBXO31Q5XUX0 539 aaPredicted RBP7.55□□□□□ -1.2
SNCA-213ENST00000618500 TMEM131LA2VDJ0 1609 aa7.55□□□□□ -1.2
SNCA-213ENST00000618500 COL22A1Q8NFW1 1626 aaPredicted RBP7.55□□□□□ -1.2
SNCA-213ENST00000618500 UBTFP17480 764 aaKnown RBP7.54□□□□□ -1.2
SNCA-213ENST00000618500 POTEAQ6S8J7 498 aa7.54□□□□□ -1.2
SNCA-213ENST00000618500 SCAF1Q9H7N4 1312 aaKnown RBP7.54□□□□□ -1.2
SNCA-213ENST00000618500 PIK3R4Q99570 1358 aa7.54□□□□□ -1.2
SNCA-213ENST00000618500 ZFYVE9O95405 1425 aa7.54□□□□□ -1.2
SNCA-213ENST00000618500 KCNA6P17658 529 aa7.54□□□□□ -1.2
SNCA-213ENST00000618500 SPHKAPQ2M3C7 1700 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms