RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 FAM9BQ8IZU0 186 aa17.17■□□□□ 0.34
CIITA-212ENST00000618207 ST20-MTHFSA0A0A6YYL1 179 aa17.16■□□□□ 0.34
CIITA-212ENST00000618207 KDM5DQ9BY66 1539 aa17.15■□□□□ 0.34
CIITA-212ENST00000618207 PRKRIP1Q9H875 184 aaPredicted RBP17.15■□□□□ 0.34
CIITA-212ENST00000618207 NPM1P06748 294 aaKnown RBP eCLIP17.13■□□□□ 0.33
CIITA-212ENST00000618207 MRS2Q9HD23 443 aa17.13■□□□□ 0.33
CIITA-212ENST00000618207 SENP3-EIF4A1A0A087X0R7 540 aa17.13■□□□□ 0.33
CIITA-212ENST00000618207 NBPF1Q3BBV0 1214 aa17.13■□□□□ 0.33
CIITA-212ENST00000618207 WDR7Q9Y4E6 1490 aa17.12■□□□□ 0.33
CIITA-212ENST00000618207 ROCK2O75116 1388 aaKnown RBP17.12■□□□□ 0.33
CIITA-212ENST00000618207 ABCC1P33527 1531 aa17.11■□□□□ 0.33
CIITA-212ENST00000618207 FKBP8Q14318 412 aa17.11■□□□□ 0.33
CIITA-212ENST00000618207 BCORL1Q5H9F3 1711 aa17.11■□□□□ 0.33
CIITA-212ENST00000618207 PLA2R1Q13018 1463 aa17.1■□□□□ 0.33
CIITA-212ENST00000618207 MAST1Q9Y2H9 1570 aa17.1■□□□□ 0.33
CIITA-212ENST00000618207 ASXL2Q76L83 1435 aa17.1■□□□□ 0.33
CIITA-212ENST00000618207 KIF3BO15066 747 aa17.1■□□□□ 0.33
CIITA-212ENST00000618207 FANCAO15360 1455 aa17.1■□□□□ 0.33
CIITA-212ENST00000618207 DUOX2Q9NRD8 1548 aa17.09■□□□□ 0.33
CIITA-212ENST00000618207 SCAPERQ9BY12 1400 aa17.09■□□□□ 0.33
CIITA-212ENST00000618207 PLXNC1O60486 1568 aa17.07■□□□□ 0.32
CIITA-212ENST00000618207 KDM5CP41229 1560 aa17.06■□□□□ 0.32
CIITA-212ENST00000618207 RALGAPBQ86X10 1494 aa17.06■□□□□ 0.32
CIITA-212ENST00000618207 UHRF1BP1Q6BDS2 1440 aa17.06■□□□□ 0.32
CIITA-212ENST00000618207 UNC13BO14795 1591 aa17.06■□□□□ 0.32
CIITA-212ENST00000618207 ERBINQ96RT1 1412 aa17.04■□□□□ 0.32
CIITA-212ENST00000618207 ADGRL1O94910 1474 aa17.04■□□□□ 0.32
CIITA-212ENST00000618207 IQGAP3Q86VI3 1631 aa17.02■□□□□ 0.32
CIITA-212ENST00000618207 A2MP01023 1474 aa17.02■□□□□ 0.31
CIITA-212ENST00000618207 NEFLP07196 543 aa17.01■□□□□ 0.31
CIITA-212ENST00000618207 IRX6P78412 446 aaPredicted RBP17.01■□□□□ 0.31
CIITA-212ENST00000618207 PRAG1Q86YV5 1406 aa17.01■□□□□ 0.31
CIITA-212ENST00000618207 ZFYVE16Q7Z3T8 1539 aa17■□□□□ 0.31
CIITA-212ENST00000618207 POLR1AO95602 1720 aaPredicted RBP17■□□□□ 0.31
CIITA-212ENST00000618207 DHX29Q7Z478 1369 aaKnown RBP16.98■□□□□ 0.31
CIITA-212ENST00000618207 ATP7AQ04656 1500 aa16.97■□□□□ 0.31
CIITA-212ENST00000618207 ABCA9Q8IUA7 1624 aa16.97■□□□□ 0.31
CIITA-212ENST00000618207 CYB5RLQ6IPT4 315 aa16.97■□□□□ 0.31
CIITA-212ENST00000618207 GGT6Q6P531 493 aa16.97■□□□□ 0.31
CIITA-212ENST00000618207 RTEL1-TNFRSF6BF6WH68 1400 aa16.95■□□□□ 0.3
CIITA-212ENST00000618207 CFAP65Q6ZU64 1925 aaKnown RBP16.95■□□□□ 0.3
CIITA-212ENST00000618207 CHGAP10645 457 aaKnown RBP16.95■□□□□ 0.3
CIITA-212ENST00000618207 MAGI2Q86UL8 1455 aa16.94■□□□□ 0.3
CIITA-212ENST00000618207 RAPGEF3O95398 923 aa16.94■□□□□ 0.3
CIITA-212ENST00000618207 KANK1Q14678 1352 aa16.94■□□□□ 0.3
CIITA-212ENST00000618207 E9PCH4 1651 aa16.94■□□□□ 0.3
CIITA-212ENST00000618207 CD109Q6YHK3 1445 aa16.94■□□□□ 0.3
CIITA-212ENST00000618207 TRPM1Q7Z4N2 1603 aa16.93■□□□□ 0.3
CIITA-212ENST00000618207 TMC1Q8TDI8 760 aa16.92■□□□□ 0.3
CIITA-212ENST00000618207 ARAP3Q8WWN8 1544 aa16.92■□□□□ 0.3
CIITA-212ENST00000618207 ATP10AO60312 1499 aa16.91■□□□□ 0.3
CIITA-212ENST00000618207 SENP3Q9H4L4 574 aaPredicted RBP16.91■□□□□ 0.3
CIITA-212ENST00000618207 ARID4BQ4LE39 1312 aaPredicted RBP16.9■□□□□ 0.3
CIITA-212ENST00000618207 DISP3Q9P2K9 1392 aa16.9■□□□□ 0.3
CIITA-212ENST00000618207 CC2D1BQ5T0F9 858 aaKnown RBP16.89■□□□□ 0.29
CIITA-212ENST00000618207 INO80Q9ULG1 1556 aaPredicted RBP16.89■□□□□ 0.29
CIITA-212ENST00000618207 UGGT1Q9NYU2 1555 aa16.88■□□□□ 0.29
CIITA-212ENST00000618207 TESK2Q96S53 571 aa16.88■□□□□ 0.29
CIITA-212ENST00000618207 SALL2Q9Y467 1007 aaPredicted RBP16.87■□□□□ 0.29
CIITA-212ENST00000618207 KIDINS220Q9ULH0 1771 aa16.85■□□□□ 0.29
CIITA-212ENST00000618207 PANK3Q9H999 370 aa16.85■□□□□ 0.29
CIITA-212ENST00000618207 CLTCL1P53675 1640 aa16.85■□□□□ 0.29
CIITA-212ENST00000618207 TMF1P82094 1093 aa16.85■□□□□ 0.29
CIITA-212ENST00000618207 ZNF518AQ6AHZ1 1483 aa16.85■□□□□ 0.29
CIITA-212ENST00000618207 SPHKAPQ2M3C7 1700 aa16.84■□□□□ 0.29
CIITA-212ENST00000618207 CFAP70Q5T0N1 1121 aa16.84■□□□□ 0.29
CIITA-212ENST00000618207 GPRASP1Q5JY77 1395 aa16.84■□□□□ 0.29
CIITA-212ENST00000618207 NUTM2DQ5VT03 806 aaPredicted RBP16.83■□□□□ 0.28
CIITA-212ENST00000618207 TRPM2O94759 1503 aa16.82■□□□□ 0.28
CIITA-212ENST00000618207 ZBED9Q6R2W3 1325 aa16.82■□□□□ 0.28
CIITA-212ENST00000618207 ADGRF5Q8IZF2 1346 aa16.82■□□□□ 0.28
CIITA-212ENST00000618207 WASHC2CQ9Y4E1 1318 aa16.82■□□□□ 0.28
CIITA-212ENST00000618207 TET3O43151 1660 aa16.81■□□□□ 0.28
CIITA-212ENST00000618207 PNISRQ8TF01 805 aaKnown RBP16.81■□□□□ 0.28
CIITA-212ENST00000618207 DEPDC5O75140 1603 aa16.81■□□□□ 0.28
CIITA-212ENST00000618207 PTPRTO14522 1441 aa16.8■□□□□ 0.28
CIITA-212ENST00000618207 PRDM15P57071 1507 aaPredicted RBP16.8■□□□□ 0.28
CIITA-212ENST00000618207 MYBBP1AQ9BQG0 1328 aaKnown RBP16.79■□□□□ 0.28
CIITA-212ENST00000618207 SLC24A1O60721 1099 aa16.79■□□□□ 0.28
CIITA-212ENST00000618207 POGZQ7Z3K3 1410 aa16.79■□□□□ 0.28
CIITA-212ENST00000618207 MROH1Q8NDA8 1641 aa16.79■□□□□ 0.28
CIITA-212ENST00000618207 EIF2AK4Q9P2K8 1649 aaKnown RBP16.79■□□□□ 0.28
CIITA-212ENST00000618207 PER1O15534 1290 aaPredicted RBP16.78■□□□□ 0.28
CIITA-212ENST00000618207 CEP152O94986 1710 aa16.78■□□□□ 0.28
CIITA-212ENST00000618207 KTN1Q86UP2 1357 aaKnown RBP16.78■□□□□ 0.28
CIITA-212ENST00000618207 RALBP1Q15311 655 aa16.78■□□□□ 0.28
CIITA-212ENST00000618207 COL17A1Q9UMD9 1497 aaPredicted RBP16.78■□□□□ 0.28
CIITA-212ENST00000618207 MADDQ8WXG6 1647 aa16.76■□□□□ 0.27
CIITA-212ENST00000618207 FAM69CQ0P6D2 419 aa16.75■□□□□ 0.27
CIITA-212ENST00000618207 VWDEQ8N2E2 1590 aa16.75■□□□□ 0.27
CIITA-212ENST00000618207 PPRC1Q5VV67 1664 aaKnown RBP16.74■□□□□ 0.27
CIITA-212ENST00000618207 TSHZ2Q9NRE2 1034 aa16.74■□□□□ 0.27
CIITA-212ENST00000618207 TMEM132EQ6IEE7 984 aa16.73■□□□□ 0.27
CIITA-212ENST00000618207 NLRP13Q86W25 1043 aa16.73■□□□□ 0.27
CIITA-212ENST00000618207 EFCAB6Q5THR3 1501 aa16.72■□□□□ 0.27
CIITA-212ENST00000618207 NPATQ14207 1427 aa16.72■□□□□ 0.27
CIITA-212ENST00000618207 TRAK1Q9UPV9 953 aa16.72■□□□□ 0.27
CIITA-212ENST00000618207 KNSTRNQ9Y448 316 aa16.72■□□□□ 0.27
CIITA-212ENST00000618207 HECW2Q9P2P5 1572 aa16.72■□□□□ 0.27
CIITA-212ENST00000618207 FRMPD1Q5SYB0 1578 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms