RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CRBNQ96SW2 442 aa17.58■□□□□ 0.41
CPSF1-212ENST00000616140 APAF1O14727 1248 aa17.58■□□□□ 0.4
CPSF1-212ENST00000616140 SLC4A10Q6U841 1118 aa17.58■□□□□ 0.4
CPSF1-212ENST00000616140 NPHP1O15259 732 aa17.57■□□□□ 0.4
CPSF1-212ENST00000616140 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.57■□□□□ 0.4
CPSF1-212ENST00000616140 FOXD4L1Q9NU39 408 aa17.57■□□□□ 0.4
CPSF1-212ENST00000616140 GOLGA6L3A6NEY3 463 aa17.56■□□□□ 0.4
CPSF1-212ENST00000616140 ELL2O00472 640 aaPredicted RBP17.56■□□□□ 0.4
CPSF1-212ENST00000616140 FAM161AQ3B820 660 aa17.56■□□□□ 0.4
CPSF1-212ENST00000616140 COG6Q9Y2V7 657 aa17.56■□□□□ 0.4
CPSF1-212ENST00000616140 DRC7Q8IY82 874 aa17.55■□□□□ 0.4
CPSF1-212ENST00000616140 HMMRO75330 724 aa17.55■□□□□ 0.4
CPSF1-212ENST00000616140 ZNF644Q9H582 1327 aaPredicted RBP17.54■□□□□ 0.4
CPSF1-212ENST00000616140 NUTM2FA1L443 756 aa17.54■□□□□ 0.4
CPSF1-212ENST00000616140 TRIM6-TRIM34B2RNG4 842 aa17.54■□□□□ 0.4
CPSF1-212ENST00000616140 TULP1O00294 542 aaPredicted RBP17.54■□□□□ 0.4
CPSF1-212ENST00000616140 KIF7Q2M1P5 1343 aa17.54■□□□□ 0.4
CPSF1-212ENST00000616140 E9PSI1 815 aa17.53■□□□□ 0.4
CPSF1-212ENST00000616140 FANCD2Q9BXW9 1451 aa17.53■□□□□ 0.4
CPSF1-212ENST00000616140 PTMSP20962 102 aa17.53■□□□□ 0.4
CPSF1-212ENST00000616140 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.52■□□□□ 0.4
CPSF1-212ENST00000616140 USP35Q9P2H5 1018 aa17.52■□□□□ 0.4
CPSF1-212ENST00000616140 FANCIQ9NVI1 1328 aa17.52■□□□□ 0.4
CPSF1-212ENST00000616140 FGD6Q6ZV73 1430 aa17.52■□□□□ 0.39
CPSF1-212ENST00000616140 CCDC7Q96M83 1385 aa17.51■□□□□ 0.39
CPSF1-212ENST00000616140 CGNL1Q0VF96 1302 aa17.51■□□□□ 0.39
CPSF1-212ENST00000616140 LMOD3Q0VAK6 560 aa17.5■□□□□ 0.39
CPSF1-212ENST00000616140 NOL8Q76FK4 1167 aaKnown RBP17.5■□□□□ 0.39
CPSF1-212ENST00000616140 ZNF330Q9Y3S2 320 aaPredicted RBP17.49■□□□□ 0.39
CPSF1-212ENST00000616140 KIAA2012Q0VF49 1180 aa17.49■□□□□ 0.39
CPSF1-212ENST00000616140 ZKSCAN2Q63HK3 967 aa17.49■□□□□ 0.39
CPSF1-212ENST00000616140 NGDNQ8NEJ9 315 aaKnown RBP17.49■□□□□ 0.39
CPSF1-212ENST00000616140 UACAQ9BZF9 1416 aa17.48■□□□□ 0.39
CPSF1-212ENST00000616140 CHMP4AQ9BY43 222 aa17.48■□□□□ 0.39
CPSF1-212ENST00000616140 KIF21BO75037 1637 aa17.48■□□□□ 0.39
CPSF1-212ENST00000616140 CSB-PGBD3P0DP91 1061 aa17.47■□□□□ 0.39
CPSF1-212ENST00000616140 WASHC2AQ641Q2 1341 aa17.47■□□□□ 0.39
CPSF1-212ENST00000616140 SYAP1Q96A49 352 aaPredicted RBP17.47■□□□□ 0.39
CPSF1-212ENST00000616140 PTPRGP23470 1445 aa17.47■□□□□ 0.39
CPSF1-212ENST00000616140 AMPHP49418 695 aa17.47■□□□□ 0.39
CPSF1-212ENST00000616140 ANKRD45Q5TZF3 282 aa17.46■□□□□ 0.39
CPSF1-212ENST00000616140 LTV1Q96GA3 475 aaPredicted RBP17.46■□□□□ 0.39
CPSF1-212ENST00000616140 MYOM3Q5VTT5 1437 aa17.46■□□□□ 0.39
CPSF1-212ENST00000616140 FGD5Q6ZNL6 1462 aa17.46■□□□□ 0.39
CPSF1-212ENST00000616140 GNL2Q13823 731 aaKnown RBP17.45■□□□□ 0.38
CPSF1-212ENST00000616140 VGFO15240 615 aaPredicted RBP17.44■□□□□ 0.38
CPSF1-212ENST00000616140 ARID3AQ99856 593 aa17.44■□□□□ 0.38
CPSF1-212ENST00000616140 ST18O60284 1047 aa17.43■□□□□ 0.38
CPSF1-212ENST00000616140 GSE1Q14687 1217 aa17.43■□□□□ 0.38
CPSF1-212ENST00000616140 LRRC9Q6ZRR7 1453 aa17.43■□□□□ 0.38
CPSF1-212ENST00000616140 EVC2Q86UK5 1308 aa17.43■□□□□ 0.38
CPSF1-212ENST00000616140 FOXD4L5Q5VV16 416 aaPredicted RBP17.43■□□□□ 0.38
CPSF1-212ENST00000616140 FOXD4L4Q8WXT5 416 aaPredicted RBP17.43■□□□□ 0.38
CPSF1-212ENST00000616140 RAD54L2Q9Y4B4 1467 aa17.42■□□□□ 0.38
CPSF1-212ENST00000616140 MINK1Q8N4C8 1332 aaPredicted RBP17.41■□□□□ 0.38
CPSF1-212ENST00000616140 HDAC5Q9UQL6 1122 aa17.41■□□□□ 0.38
CPSF1-212ENST00000616140 CHMP3Q9Y3E7 222 aa17.41■□□□□ 0.38
CPSF1-212ENST00000616140 CNTLNQ9NXG0 1405 aa17.4■□□□□ 0.38
CPSF1-212ENST00000616140 GAPVD1Q14C86 1478 aa17.4■□□□□ 0.38
CPSF1-212ENST00000616140 HTATSF1O43719 755 aaKnown RBP17.39■□□□□ 0.38
CPSF1-212ENST00000616140 GPATCH3Q96I76 525 aa17.39■□□□□ 0.38
CPSF1-212ENST00000616140 GORABQ5T7V8 394 aa17.39■□□□□ 0.37
CPSF1-212ENST00000616140 EID1Q9Y6B2 187 aa17.39■□□□□ 0.37
CPSF1-212ENST00000616140 DDX49Q9Y6V7 483 aaKnown RBP17.39■□□□□ 0.37
CPSF1-212ENST00000616140 ARAP1Q96P48 1450 aa17.38■□□□□ 0.37
CPSF1-212ENST00000616140 DDX11L8A8MPP1 907 aa17.38■□□□□ 0.37
CPSF1-212ENST00000616140 NGEFQ8N5V2 710 aa17.38■□□□□ 0.37
CPSF1-212ENST00000616140 DZIP1LQ8IYY4 767 aaKnown RBP17.37■□□□□ 0.37
CPSF1-212ENST00000616140 COG3Q96JB2 828 aa17.37■□□□□ 0.37
CPSF1-212ENST00000616140 DDX19BQ9UMR2 479 aa17.37■□□□□ 0.37
CPSF1-212ENST00000616140 RILPL2Q969X0 211 aa17.36■□□□□ 0.37
CPSF1-212ENST00000616140 ANKRD50Q9ULJ7 1429 aa17.35■□□□□ 0.37
CPSF1-212ENST00000616140 RIPK4P57078 832 aa17.35■□□□□ 0.37
CPSF1-212ENST00000616140 CDCA7LQ96GN5 454 aa17.35■□□□□ 0.37
CPSF1-212ENST00000616140 FOXD4L6Q3SYB3 417 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-212ENST00000616140 FOXD4L3Q6VB84 417 aaPredicted RBP17.35■□□□□ 0.37
CPSF1-212ENST00000616140 ADAMTS8Q9UP79 889 aa17.35■□□□□ 0.37
CPSF1-212ENST00000616140 DIAPH1O60610 1272 aaKnown RBP17.34■□□□□ 0.37
CPSF1-212ENST00000616140 HSP90B1P14625 803 aaKnown RBP17.34■□□□□ 0.37
CPSF1-212ENST00000616140 ISY1Q9ULR0 285 aaKnown RBP17.34■□□□□ 0.37
CPSF1-212ENST00000616140 KIF16BQ96L93 1317 aa17.32■□□□□ 0.36
CPSF1-212ENST00000616140 NCOA2Q15596 1464 aa17.32■□□□□ 0.36
CPSF1-212ENST00000616140 TAF7LQ5H9L4 462 aa17.32■□□□□ 0.36
CPSF1-212ENST00000616140 RUNDC1Q96C34 613 aa17.32■□□□□ 0.36
CPSF1-212ENST00000616140 RRBP1Q9P2E9 1410 aaKnown RBP17.32■□□□□ 0.36
CPSF1-212ENST00000616140 AEBP2Q6ZN18 517 aaPredicted RBP17.31■□□□□ 0.36
CPSF1-212ENST00000616140 PANK1Q8TE04 598 aa17.31■□□□□ 0.36
CPSF1-212ENST00000616140 CASKIN1Q8WXD9 1431 aa17.3■□□□□ 0.36
CPSF1-212ENST00000616140 CSPP1Q1MSJ5 1256 aa17.3■□□□□ 0.36
CPSF1-212ENST00000616140 LNPKQ9C0E8 428 aa17.3■□□□□ 0.36
CPSF1-212ENST00000616140 BRD4O60885 1362 aaPredicted RBP17.29■□□□□ 0.36
CPSF1-212ENST00000616140 CUX1P39880 1505 aa17.28■□□□□ 0.36
CPSF1-212ENST00000616140 NBPF8Q3BBV2 869 aa17.28■□□□□ 0.36
CPSF1-212ENST00000616140 PHF14O94880 888 aa17.28■□□□□ 0.36
CPSF1-212ENST00000616140 API5Q9BZZ5 524 aaKnown RBP17.27■□□□□ 0.36
CPSF1-212ENST00000616140 GGNBP2Q9H3C7 697 aa17.27■□□□□ 0.36
CPSF1-212ENST00000616140 CHMP5Q9NZZ3 219 aa17.27■□□□□ 0.36
CPSF1-212ENST00000616140 TEFQ10587 303 aa17.27■□□□□ 0.35
CPSF1-212ENST00000616140 STAC3Q96MF2 364 aa17.27■□□□□ 0.35
CPSF1-212ENST00000616140 MIA2Q96PC5 1412 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms