RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 C9orf84Q5VXU9 1444 aa16.23■□□□□ 0.19
MSH6-213ENST00000614496 APAF1O14727 1248 aa16.23■□□□□ 0.19
MSH6-213ENST00000614496 SPRYD3Q8NCJ5 442 aa16.23■□□□□ 0.19
MSH6-213ENST00000614496 MS4A1P11836 297 aa16.23■□□□□ 0.19
MSH6-213ENST00000614496 BECN1Q14457 450 aa16.23■□□□□ 0.19
MSH6-213ENST00000614496 CAMSAP2Q08AD1 1489 aa16.22■□□□□ 0.19
MSH6-213ENST00000614496 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.22■□□□□ 0.19
MSH6-213ENST00000614496 BACH2Q9BYV9 841 aa16.22■□□□□ 0.19
MSH6-213ENST00000614496 SLKQ9H2G2 1235 aaPredicted RBP16.22■□□□□ 0.19
MSH6-213ENST00000614496 RRP7AQ9Y3A4 280 aaKnown RBP16.21■□□□□ 0.19
MSH6-213ENST00000614496 KDM6BO15054 1643 aa16.21■□□□□ 0.19
MSH6-213ENST00000614496 TCOF1Q13428 1488 aaKnown RBP16.21■□□□□ 0.19
MSH6-213ENST00000614496 PTPRGP23470 1445 aa16.2■□□□□ 0.18
MSH6-213ENST00000614496 RSPH4AQ5TD94 716 aa16.2■□□□□ 0.18
MSH6-213ENST00000614496 LAMC3Q9Y6N6 1575 aa16.2■□□□□ 0.18
MSH6-213ENST00000614496 CLUAP1Q96AJ1 413 aa16.2■□□□□ 0.18
MSH6-213ENST00000614496 MORC1Q86VD1 984 aa16.19■□□□□ 0.18
MSH6-213ENST00000614496 DHX29Q7Z478 1369 aaKnown RBP16.19■□□□□ 0.18
MSH6-213ENST00000614496 C20orf194Q5TEA3 1177 aa16.19■□□□□ 0.18
MSH6-213ENST00000614496 CENPQQ7L2Z9 268 aaPredicted RBP16.19■□□□□ 0.18
MSH6-213ENST00000614496 SAFB2Q14151 953 aaKnown RBP eCLIP16.19■□□□□ 0.18
MSH6-213ENST00000614496 EFCAB2Q5VUJ9 269 aa16.19■□□□□ 0.18
MSH6-213ENST00000614496 ZNF608Q9ULD9 1512 aaPredicted RBP16.19■□□□□ 0.18
MSH6-213ENST00000614496 HSP90AA1P07900 732 aaKnown RBP16.18■□□□□ 0.18
MSH6-213ENST00000614496 KIAA0586Q9BVV6 1533 aa16.18■□□□□ 0.18
MSH6-213ENST00000614496 IL27Q8NEV9 243 aa16.18■□□□□ 0.18
MSH6-213ENST00000614496 BCL2L13Q9BXK5 485 aa16.18■□□□□ 0.18
MSH6-213ENST00000614496 FAM161AQ3B820 660 aa16.17■□□□□ 0.18
MSH6-213ENST00000614496 FTSJ3Q8IY81 847 aaKnown RBP16.17■□□□□ 0.18
MSH6-213ENST00000614496 KIF3BO15066 747 aa16.17■□□□□ 0.18
MSH6-213ENST00000614496 CFAP53Q96M91 514 aa16.16■□□□□ 0.18
MSH6-213ENST00000614496 U2SURPO15042 1029 aaKnown RBP16.16■□□□□ 0.18
MSH6-213ENST00000614496 COG6Q9Y2V7 657 aa16.16■□□□□ 0.18
MSH6-213ENST00000614496 MRC2Q9UBG0 1479 aa16.15■□□□□ 0.18
MSH6-213ENST00000614496 ARHGEF11O15085 1522 aa16.14■□□□□ 0.17
MSH6-213ENST00000614496 USP35Q9P2H5 1018 aa16.14■□□□□ 0.17
MSH6-213ENST00000614496 PPP2R1AP30153 589 aa16.14■□□□□ 0.17
MSH6-213ENST00000614496 TEX14Q8IWB6 1497 aa16.14■□□□□ 0.17
MSH6-213ENST00000614496 SPAG9O60271 1321 aaKnown RBP16.13■□□□□ 0.17
MSH6-213ENST00000614496 NUP153P49790 1475 aaKnown RBP16.13■□□□□ 0.17
MSH6-213ENST00000614496 SAMD9Q5K651 1589 aa16.12■□□□□ 0.17
MSH6-213ENST00000614496 GSE1Q14687 1217 aa16.12■□□□□ 0.17
MSH6-213ENST00000614496 NFKBIBQ15653 356 aa16.12■□□□□ 0.17
MSH6-213ENST00000614496 GPATCH8Q9UKJ3 1502 aaKnown RBP16.12■□□□□ 0.17
MSH6-213ENST00000614496 CENPJQ9HC77 1338 aaPredicted RBP16.12■□□□□ 0.17
MSH6-213ENST00000614496 NUTM2DQ5VT03 806 aaPredicted RBP16.12■□□□□ 0.17
MSH6-213ENST00000614496 TRAK1Q9UPV9 953 aa16.11■□□□□ 0.17
MSH6-213ENST00000614496 PZPP20742 1482 aa16.1■□□□□ 0.17
MSH6-213ENST00000614496 BCAR3O75815 825 aa16.1■□□□□ 0.17
MSH6-213ENST00000614496 GGT6Q6P531 493 aa16.1■□□□□ 0.17
MSH6-213ENST00000614496 U2AF1L5P0DN76 240 aaPredicted RBP16.1■□□□□ 0.17
MSH6-213ENST00000614496 U2AF1Q01081 240 aaKnown RBP eCLIP16.1■□□□□ 0.17
MSH6-213ENST00000614496 IFT140Q96RY7 1462 aa16.09■□□□□ 0.17
MSH6-213ENST00000614496 NPM1P06748 294 aaKnown RBP eCLIP16.09■□□□□ 0.17
MSH6-213ENST00000614496 SPATA31E1Q6ZUB1 1445 aa16.09■□□□□ 0.17
MSH6-213ENST00000614496 STAG3Q9UJ98 1225 aa16.09■□□□□ 0.17
MSH6-213ENST00000614496 WDR62O43379 1518 aa16.09■□□□□ 0.17
MSH6-213ENST00000614496 PANK1Q8TE04 598 aa16.09■□□□□ 0.17
MSH6-213ENST00000614496 KANK1Q14678 1352 aa16.09■□□□□ 0.17
MSH6-213ENST00000614496 GZF1Q9H116 711 aaPredicted RBP16.07■□□□□ 0.16
MSH6-213ENST00000614496 DENND4BO75064 1496 aaPredicted RBP16.07■□□□□ 0.16
MSH6-213ENST00000614496 ERBINQ96RT1 1412 aa16.07■□□□□ 0.16
MSH6-213ENST00000614496 AFAP1Q8N556 730 aa16.07■□□□□ 0.16
MSH6-213ENST00000614496 BRPF3Q9ULD4 1205 aa16.07■□□□□ 0.16
MSH6-213ENST00000614496 STK26Q9P289 416 aa16.06■□□□□ 0.16
MSH6-213ENST00000614496 E9PSI1 815 aa16.06■□□□□ 0.16
MSH6-213ENST00000614496 GRIN2AQ12879 1464 aa16.06■□□□□ 0.16
MSH6-213ENST00000614496 DISP3Q9P2K9 1392 aa16.06■□□□□ 0.16
MSH6-213ENST00000614496 MAPK8IP3Q9UPT6 1336 aa16.05■□□□□ 0.16
MSH6-213ENST00000614496 CFAP70Q5T0N1 1121 aa16.05■□□□□ 0.16
MSH6-213ENST00000614496 WASHC2CQ9Y4E1 1318 aa16.04■□□□□ 0.16
MSH6-213ENST00000614496 ABCA5Q8WWZ7 1642 aa16.04■□□□□ 0.16
MSH6-213ENST00000614496 KDM5BQ9UGL1 1544 aa16.04■□□□□ 0.16
MSH6-213ENST00000614496 FRAT2O75474 233 aaPredicted RBP16.04■□□□□ 0.16
MSH6-213ENST00000614496 ANO8Q9HCE9 1232 aaPredicted RBP16.04■□□□□ 0.16
MSH6-213ENST00000614496 GCC2Q8IWJ2 1684 aa16.04■□□□□ 0.16
MSH6-213ENST00000614496 EIF3AQ14152 1382 aaKnown RBP16.03■□□□□ 0.16
MSH6-213ENST00000614496 SLC24A1O60721 1099 aa16.03■□□□□ 0.16
MSH6-213ENST00000614496 MAGI1Q96QZ7 1491 aaPredicted RBP16.03■□□□□ 0.16
MSH6-213ENST00000614496 RNF123Q5XPI4 1314 aa16.03■□□□□ 0.16
MSH6-213ENST00000614496 ARHGAP5Q13017 1502 aa16.03■□□□□ 0.16
MSH6-213ENST00000614496 SRPK2P78362 688 aaKnown RBP16.02■□□□□ 0.16
MSH6-213ENST00000614496 RALGAPBQ86X10 1494 aa16.02■□□□□ 0.16
MSH6-213ENST00000614496 MFAP1P55081 439 aaKnown RBP16.02■□□□□ 0.16
MSH6-213ENST00000614496 SYNJ2O15056 1496 aa16.02■□□□□ 0.15
MSH6-213ENST00000614496 RAPGEF6Q8TEU7 1601 aa16.01■□□□□ 0.15
MSH6-213ENST00000614496 DNMT1P26358 1616 aaKnown RBP16.01■□□□□ 0.15
MSH6-213ENST00000614496 ITPRIPQ8IWB1 547 aa16.01■□□□□ 0.15
MSH6-213ENST00000614496 RWDD1Q9H446 243 aaPredicted RBP16.01■□□□□ 0.15
MSH6-213ENST00000614496 CGNL1Q0VF96 1302 aa16■□□□□ 0.15
MSH6-213ENST00000614496 PMFBP1Q8TBY8 1022 aa15.99■□□□□ 0.15
MSH6-213ENST00000614496 SMC4Q9NTJ3 1288 aa15.99■□□□□ 0.15
MSH6-213ENST00000614496 PER1O15534 1290 aaPredicted RBP15.99■□□□□ 0.15
MSH6-213ENST00000614496 POGKQ9P215 609 aa15.99■□□□□ 0.15
MSH6-213ENST00000614496 DUSP27Q5VZP5 1158 aa15.98■□□□□ 0.15
MSH6-213ENST00000614496 LRPPRCP42704 1394 aaKnown RBP15.97■□□□□ 0.15
MSH6-213ENST00000614496 PARD3Q8TEW0 1356 aa15.97■□□□□ 0.15
MSH6-213ENST00000614496 DISP1Q96F81 1524 aa15.97■□□□□ 0.15
MSH6-213ENST00000614496 ADAMTS12P58397 1594 aa15.97■□□□□ 0.15
MSH6-213ENST00000614496 SLFN5Q08AF3 891 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms