RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 C20orf194Q5TEA3 1177 aa16.27■□□□□ 0.2
LIG1-221ENST00000613670 CENPQQ7L2Z9 268 aaPredicted RBP16.27■□□□□ 0.2
LIG1-221ENST00000613670 APAF1O14727 1248 aa16.26■□□□□ 0.19
LIG1-221ENST00000613670 HSP90AA1P07900 732 aaKnown RBP16.26■□□□□ 0.19
LIG1-221ENST00000613670 UGGT2Q9NYU1 1516 aa16.26■□□□□ 0.19
LIG1-221ENST00000613670 ROCK1Q13464 1354 aa16.25■□□□□ 0.19
LIG1-221ENST00000613670 CUL7Q14999 1698 aa16.25■□□□□ 0.19
LIG1-221ENST00000613670 CLUAP1Q96AJ1 413 aa16.25■□□□□ 0.19
LIG1-221ENST00000613670 CARMIL2Q6F5E8 1435 aa16.24■□□□□ 0.19
LIG1-221ENST00000613670 HECW1Q76N89 1606 aa16.24■□□□□ 0.19
LIG1-221ENST00000613670 DHX29Q7Z478 1369 aaKnown RBP16.24■□□□□ 0.19
LIG1-221ENST00000613670 GZF1Q9H116 711 aaPredicted RBP16.22■□□□□ 0.19
LIG1-221ENST00000613670 RRP7AQ9Y3A4 280 aaKnown RBP16.22■□□□□ 0.19
LIG1-221ENST00000613670 URB2Q14146 1524 aaKnown RBP16.22■□□□□ 0.19
LIG1-221ENST00000613670 BCL2L13Q9BXK5 485 aa16.22■□□□□ 0.19
LIG1-221ENST00000613670 THOC2Q8NI27 1593 aaKnown RBP16.22■□□□□ 0.19
LIG1-221ENST00000613670 COG6Q9Y2V7 657 aa16.22■□□□□ 0.19
LIG1-221ENST00000613670 FRAT2O75474 233 aaPredicted RBP16.21■□□□□ 0.18
LIG1-221ENST00000613670 FTSJ3Q8IY81 847 aaKnown RBP16.2■□□□□ 0.18
LIG1-221ENST00000613670 KDM6BO15054 1643 aa16.17■□□□□ 0.18
LIG1-221ENST00000613670 TROQ12816 1431 aaPredicted RBP16.17■□□□□ 0.18
LIG1-221ENST00000613670 MORC1Q86VD1 984 aa16.16■□□□□ 0.18
LIG1-221ENST00000613670 MAGI3Q5TCQ9 1506 aa16.16■□□□□ 0.18
LIG1-221ENST00000613670 BCAR3O75815 825 aa16.16■□□□□ 0.18
LIG1-221ENST00000613670 CENPJQ9HC77 1338 aaPredicted RBP16.15■□□□□ 0.18
LIG1-221ENST00000613670 PPP2R1AP30153 589 aa16.15■□□□□ 0.18
LIG1-221ENST00000613670 ERCC6Q03468 1493 aa16.15■□□□□ 0.18
LIG1-221ENST00000613670 C9orf84Q5VXU9 1444 aa16.15■□□□□ 0.18
LIG1-221ENST00000613670 RNF123Q5XPI4 1314 aa16.14■□□□□ 0.18
LIG1-221ENST00000613670 PANK1Q8TE04 598 aa16.14■□□□□ 0.18
LIG1-221ENST00000613670 IQGAP2Q13576 1575 aa16.14■□□□□ 0.17
LIG1-221ENST00000613670 TCOF1Q13428 1488 aaKnown RBP16.14■□□□□ 0.17
LIG1-221ENST00000613670 CTTNBP2Q8WZ74 1663 aa16.14■□□□□ 0.17
LIG1-221ENST00000613670 U2SURPO15042 1029 aaKnown RBP16.13■□□□□ 0.17
LIG1-221ENST00000613670 TEX14Q8IWB6 1497 aa16.13■□□□□ 0.17
LIG1-221ENST00000613670 CFAP53Q96M91 514 aa16.13■□□□□ 0.17
LIG1-221ENST00000613670 CAMSAP2Q08AD1 1489 aa16.13■□□□□ 0.17
LIG1-221ENST00000613670 NAP1L5Q96NT1 182 aaPredicted RBP16.13■□□□□ 0.17
LIG1-221ENST00000613670 SPATA31E1Q6ZUB1 1445 aa16.13■□□□□ 0.17
LIG1-221ENST00000613670 SAFB2Q14151 953 aaKnown RBP eCLIP16.12■□□□□ 0.17
LIG1-221ENST00000613670 PLB1Q6P1J6 1458 aa16.11■□□□□ 0.17
LIG1-221ENST00000613670 MFAP1P55081 439 aaKnown RBP16.1■□□□□ 0.17
LIG1-221ENST00000613670 E9PSI1 815 aa16.09■□□□□ 0.17
LIG1-221ENST00000613670 RSPH4AQ5TD94 716 aa16.09■□□□□ 0.17
LIG1-221ENST00000613670 U2AF1L5P0DN76 240 aaPredicted RBP16.09■□□□□ 0.17
LIG1-221ENST00000613670 U2AF1Q01081 240 aaKnown RBP eCLIP16.09■□□□□ 0.17
LIG1-221ENST00000613670 DENND4BO75064 1496 aaPredicted RBP16.08■□□□□ 0.16
LIG1-221ENST00000613670 KDM5BQ9UGL1 1544 aa16.07■□□□□ 0.16
LIG1-221ENST00000613670 PZPP20742 1482 aa16.06■□□□□ 0.16
LIG1-221ENST00000613670 KIF3BO15066 747 aa16.06■□□□□ 0.16
LIG1-221ENST00000613670 CGNL1Q0VF96 1302 aa16.05■□□□□ 0.16
LIG1-221ENST00000613670 WASHC2CQ9Y4E1 1318 aa16.05■□□□□ 0.16
LIG1-221ENST00000613670 PRKCSHP14314 528 aaPredicted RBP16.05■□□□□ 0.16
LIG1-221ENST00000613670 L1TD1Q5T7N2 865 aaKnown RBP16.05■□□□□ 0.16
LIG1-221ENST00000613670 TRIM44Q96DX7 344 aaPredicted RBP16.05■□□□□ 0.16
LIG1-221ENST00000613670 RWDD1Q9H446 243 aaPredicted RBP16.05■□□□□ 0.16
LIG1-221ENST00000613670 EFCAB2Q5VUJ9 269 aa16.05■□□□□ 0.16
LIG1-221ENST00000613670 TRAK1Q9UPV9 953 aa16.05■□□□□ 0.16
LIG1-221ENST00000613670 DISP3Q9P2K9 1392 aa16.05■□□□□ 0.16
LIG1-221ENST00000613670 PMFBP1Q8TBY8 1022 aa16.04■□□□□ 0.16
LIG1-221ENST00000613670 ANP32BQ92688 251 aaKnown RBP16.04■□□□□ 0.16
LIG1-221ENST00000613670 ERBINQ96RT1 1412 aa16.04■□□□□ 0.16
LIG1-221ENST00000613670 DUSP27Q5VZP5 1158 aa16.04■□□□□ 0.16
LIG1-221ENST00000613670 PTPRGP23470 1445 aa16.04■□□□□ 0.16
LIG1-221ENST00000613670 ITPRIPQ8IWB1 547 aa16.03■□□□□ 0.16
LIG1-221ENST00000613670 LRPPRCP42704 1394 aaKnown RBP16.03■□□□□ 0.16
LIG1-221ENST00000613670 MAPK8IP3Q9UPT6 1336 aa16.03■□□□□ 0.16
LIG1-221ENST00000613670 NUTM2DQ5VT03 806 aaPredicted RBP16.03■□□□□ 0.16
LIG1-221ENST00000613670 ARHGEF11O15085 1522 aa16.03■□□□□ 0.16
LIG1-221ENST00000613670 KIAA0586Q9BVV6 1533 aa16.03■□□□□ 0.16
LIG1-221ENST00000613670 GPATCH8Q9UKJ3 1502 aaKnown RBP16.03■□□□□ 0.16
LIG1-221ENST00000613670 HSCBQ8IWL3 235 aa16.02■□□□□ 0.16
LIG1-221ENST00000613670 NUP153P49790 1475 aaKnown RBP16.02■□□□□ 0.15
LIG1-221ENST00000613670 PER1O15534 1290 aaPredicted RBP16.02■□□□□ 0.15
LIG1-221ENST00000613670 HSP90AB1P08238 724 aaKnown RBP16.01■□□□□ 0.15
LIG1-221ENST00000613670 SLFN5Q08AF3 891 aa16.01■□□□□ 0.15
LIG1-221ENST00000613670 SMC4Q9NTJ3 1288 aa16.01■□□□□ 0.15
LIG1-221ENST00000613670 NCLP19338 710 aaKnown RBP16.01■□□□□ 0.15
LIG1-221ENST00000613670 FOXD4L1Q9NU39 408 aa16.01■□□□□ 0.15
LIG1-221ENST00000613670 SPAG9O60271 1321 aaKnown RBP16.01■□□□□ 0.15
LIG1-221ENST00000613670 GOLGA6L3A6NEY3 463 aa16■□□□□ 0.15
LIG1-221ENST00000613670 LAMC3Q9Y6N6 1575 aa16■□□□□ 0.15
LIG1-221ENST00000613670 RALGAPBQ86X10 1494 aa16■□□□□ 0.15
LIG1-221ENST00000613670 ZNF608Q9ULD9 1512 aaPredicted RBP16■□□□□ 0.15
LIG1-221ENST00000613670 SAMD9Q5K651 1589 aa16■□□□□ 0.15
LIG1-221ENST00000613670 CFAP70Q5T0N1 1121 aa16■□□□□ 0.15
LIG1-221ENST00000613670 PARD3Q8TEW0 1356 aa16■□□□□ 0.15
LIG1-221ENST00000613670 POGKQ9P215 609 aa16■□□□□ 0.15
LIG1-221ENST00000613670 GLIPR1L2Q4G1C9 344 aa15.98■□□□□ 0.15
LIG1-221ENST00000613670 GGT6Q6P531 493 aa15.98■□□□□ 0.15
LIG1-221ENST00000613670 STK26Q9P289 416 aa15.98■□□□□ 0.15
LIG1-221ENST00000613670 PNNQ9H307 717 aaKnown RBP15.98■□□□□ 0.15
LIG1-221ENST00000613670 SLC24A1O60721 1099 aa15.97■□□□□ 0.15
LIG1-221ENST00000613670 EIF3AQ14152 1382 aaKnown RBP15.97■□□□□ 0.15
LIG1-221ENST00000613670 MYH16Q9H6N6 1097 aa15.97■□□□□ 0.15
LIG1-221ENST00000613670 TESK2Q96S53 571 aa15.97■□□□□ 0.15
LIG1-221ENST00000613670 WDR62O43379 1518 aa15.96■□□□□ 0.15
LIG1-221ENST00000613670 GCC2Q8IWJ2 1684 aa15.96■□□□□ 0.15
LIG1-221ENST00000613670 IGHDP01880 384 aa15.96■□□□□ 0.15
LIG1-221ENST00000613670 C8orf34Q49A92 452 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms