RNA–Protein interactions for RNA: ENST00000613073.4

CNOT3-208, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-208ENST00000613073 DUOX2Q9NRD8 1548 aa22.71■■□□□ 1.23
CNOT3-208ENST00000613073 RGL3Q3MIN7 710 aa22.7■■□□□ 1.22
CNOT3-208ENST00000613073 KIF7Q2M1P5 1343 aa22.69■■□□□ 1.22
CNOT3-208ENST00000613073 UNC13BO14795 1591 aa22.69■■□□□ 1.22
CNOT3-208ENST00000613073 ASXL2Q76L83 1435 aa22.69■■□□□ 1.22
CNOT3-208ENST00000613073 MYT1LQ9UL68 1186 aa22.69■■□□□ 1.22
CNOT3-208ENST00000613073 USP47Q96K76 1375 aa22.69■■□□□ 1.22
CNOT3-208ENST00000613073 POLR3GLQ9BT43 218 aa22.68■■□□□ 1.22
CNOT3-208ENST00000613073 CCDC144AA2RUR9 1427 aa22.68■■□□□ 1.22
CNOT3-208ENST00000613073 IRX6P78412 446 aaPredicted RBP22.67■■□□□ 1.22
CNOT3-208ENST00000613073 FANCAO15360 1455 aa22.67■■□□□ 1.22
CNOT3-208ENST00000613073 CNTLNQ9NXG0 1405 aa22.66■■□□□ 1.22
CNOT3-208ENST00000613073 NPM1P06748 294 aaKnown RBP eCLIP22.66■■□□□ 1.22
CNOT3-208ENST00000613073 CARD11Q9BXL7 1154 aa22.66■■□□□ 1.22
CNOT3-208ENST00000613073 ERBINQ96RT1 1412 aa22.65■■□□□ 1.22
CNOT3-208ENST00000613073 PLA2R1Q13018 1463 aa22.64■■□□□ 1.22
CNOT3-208ENST00000613073 UHRF1BP1Q6BDS2 1440 aa22.63■■□□□ 1.21
CNOT3-208ENST00000613073 ARAP3Q8WWN8 1544 aa22.62■■□□□ 1.21
CNOT3-208ENST00000613073 IQGAP3Q86VI3 1631 aa22.62■■□□□ 1.21
CNOT3-208ENST00000613073 ABCA9Q8IUA7 1624 aa22.61■■□□□ 1.21
CNOT3-208ENST00000613073 RALGAPBQ86X10 1494 aa22.59■■□□□ 1.21
CNOT3-208ENST00000613073 SCAPERQ9BY12 1400 aa22.59■■□□□ 1.21
CNOT3-208ENST00000613073 CNGB1Q14028 1251 aaPredicted RBP22.59■■□□□ 1.21
CNOT3-208ENST00000613073 ZFYVE16Q7Z3T8 1539 aa22.59■■□□□ 1.21
CNOT3-208ENST00000613073 ADGRL1O94910 1474 aa22.59■■□□□ 1.21
CNOT3-208ENST00000613073 KDM5CP41229 1560 aa22.58■■□□□ 1.2
CNOT3-208ENST00000613073 DEKP35659 375 aaKnown RBP22.57■■□□□ 1.2
CNOT3-208ENST00000613073 BCORL1Q5H9F3 1711 aa22.57■■□□□ 1.2
CNOT3-208ENST00000613073 RTEL1-TNFRSF6BF6WH68 1400 aa22.57■■□□□ 1.2
CNOT3-208ENST00000613073 MAGI2Q86UL8 1455 aa22.57■■□□□ 1.2
CNOT3-208ENST00000613073 CCDC184Q52MB2 194 aa22.55■■□□□ 1.2
CNOT3-208ENST00000613073 FANCIQ9NVI1 1328 aa22.55■■□□□ 1.2
CNOT3-208ENST00000613073 ROCK2O75116 1388 aaKnown RBP22.55■■□□□ 1.2
CNOT3-208ENST00000613073 ST20-MTHFSA0A0A6YYL1 179 aa22.55■■□□□ 1.2
CNOT3-208ENST00000613073 PRKRIP1Q9H875 184 aaPredicted RBP22.55■■□□□ 1.2
CNOT3-208ENST00000613073 POLR1AO95602 1720 aaPredicted RBP22.53■■□□□ 1.2
CNOT3-208ENST00000613073 KIF3BO15066 747 aa22.53■■□□□ 1.2
CNOT3-208ENST00000613073 ATP7AQ04656 1500 aa22.53■■□□□ 1.2
CNOT3-208ENST00000613073 NBPF1Q3BBV0 1214 aa22.52■■□□□ 1.2
CNOT3-208ENST00000613073 A2MP01023 1474 aa22.51■■□□□ 1.19
CNOT3-208ENST00000613073 PRAG1Q86YV5 1406 aa22.5■■□□□ 1.19
CNOT3-208ENST00000613073 HNRNPUQ00839 825 aaKnown RBP eCLIP22.48■■□□□ 1.19
CNOT3-208ENST00000613073 INO80Q9ULG1 1556 aaPredicted RBP22.48■■□□□ 1.19
CNOT3-208ENST00000613073 CD109Q6YHK3 1445 aa22.46■■□□□ 1.19
CNOT3-208ENST00000613073 ATP10AO60312 1499 aa22.46■■□□□ 1.19
CNOT3-208ENST00000613073 ANO8Q9HCE9 1232 aaPredicted RBP22.45■■□□□ 1.19
CNOT3-208ENST00000613073 E9PCH4 1651 aa22.45■■□□□ 1.18
CNOT3-208ENST00000613073 NBR1Q14596 966 aa22.45■■□□□ 1.18
CNOT3-208ENST00000613073 MRS2Q9HD23 443 aa22.44■■□□□ 1.18
CNOT3-208ENST00000613073 FAM9BQ8IZU0 186 aa22.44■■□□□ 1.18
CNOT3-208ENST00000613073 DHX29Q7Z478 1369 aaKnown RBP22.43■■□□□ 1.18
CNOT3-208ENST00000613073 TRPM1Q7Z4N2 1603 aa22.43■■□□□ 1.18
CNOT3-208ENST00000613073 KANK1Q14678 1352 aa22.43■■□□□ 1.18
CNOT3-208ENST00000613073 ARID4BQ4LE39 1312 aaPredicted RBP22.41■■□□□ 1.18
CNOT3-208ENST00000613073 DEPDC5O75140 1603 aa22.39■■□□□ 1.18
CNOT3-208ENST00000613073 CYB5RLQ6IPT4 315 aa22.38■■□□□ 1.17
CNOT3-208ENST00000613073 ZNF518AQ6AHZ1 1483 aa22.38■■□□□ 1.17
CNOT3-208ENST00000613073 KIDINS220Q9ULH0 1771 aa22.38■■□□□ 1.17
CNOT3-208ENST00000613073 TRPM2O94759 1503 aa22.35■■□□□ 1.17
CNOT3-208ENST00000613073 TET3O43151 1660 aa22.34■■□□□ 1.17
CNOT3-208ENST00000613073 RAPGEF3O95398 923 aa22.34■■□□□ 1.17
CNOT3-208ENST00000613073 SPHKAPQ2M3C7 1700 aa22.34■■□□□ 1.17
CNOT3-208ENST00000613073 PTPRTO14522 1441 aa22.33■■□□□ 1.17
CNOT3-208ENST00000613073 GPRASP1Q5JY77 1395 aa22.33■■□□□ 1.17
CNOT3-208ENST00000613073 CLTCL1P53675 1640 aa22.32■■□□□ 1.16
CNOT3-208ENST00000613073 GGT6Q6P531 493 aa22.32■■□□□ 1.16
CNOT3-208ENST00000613073 MROH1Q8NDA8 1641 aa22.32■■□□□ 1.16
CNOT3-208ENST00000613073 POGZQ7Z3K3 1410 aa22.32■■□□□ 1.16
CNOT3-208ENST00000613073 VWDEQ8N2E2 1590 aa22.32■■□□□ 1.16
CNOT3-208ENST00000613073 PRDM15P57071 1507 aaPredicted RBP22.3■■□□□ 1.16
CNOT3-208ENST00000613073 EIF2AK4Q9P2K8 1649 aaKnown RBP22.3■■□□□ 1.16
CNOT3-208ENST00000613073 TESK2Q96S53 571 aa22.28■■□□□ 1.16
CNOT3-208ENST00000613073 UGGT1Q9NYU2 1555 aa22.28■■□□□ 1.16
CNOT3-208ENST00000613073 CFAP74Q9C0B2 1584 aa22.28■■□□□ 1.16
CNOT3-208ENST00000613073 CEP152O94986 1710 aa22.27■■□□□ 1.16
CNOT3-208ENST00000613073 B4GALNT3Q6L9W6 998 aa22.27■■□□□ 1.16
CNOT3-208ENST00000613073 DISP3Q9P2K9 1392 aa22.26■■□□□ 1.15
CNOT3-208ENST00000613073 PAK3O75914 559 aaPredicted RBP22.26■■□□□ 1.15
CNOT3-208ENST00000613073 SALL2Q9Y467 1007 aaPredicted RBP22.25■■□□□ 1.15
CNOT3-208ENST00000613073 MLH3Q9UHC1 1453 aa22.24■■□□□ 1.15
CNOT3-208ENST00000613073 MADDQ8WXG6 1647 aa22.23■■□□□ 1.15
CNOT3-208ENST00000613073 LAMC1P11047 1609 aa22.22■■□□□ 1.15
CNOT3-208ENST00000613073 CFAP65Q6ZU64 1925 aaKnown RBP22.22■■□□□ 1.15
CNOT3-208ENST00000613073 NOP58Q9Y2X3 529 aaKnown RBP22.22■■□□□ 1.15
CNOT3-208ENST00000613073 HECW2Q9P2P5 1572 aa22.22■■□□□ 1.15
CNOT3-208ENST00000613073 CHGAP10645 457 aaKnown RBP22.22■■□□□ 1.15
CNOT3-208ENST00000613073 EFCAB6Q5THR3 1501 aa22.22■■□□□ 1.15
CNOT3-208ENST00000613073 PPRC1Q5VV67 1664 aaKnown RBP22.22■■□□□ 1.15
CNOT3-208ENST00000613073 FRMPD1Q5SYB0 1578 aa22.21■■□□□ 1.15
CNOT3-208ENST00000613073 SENP3-EIF4A1A0A087X0R7 540 aa22.21■■□□□ 1.15
CNOT3-208ENST00000613073 CCDC136Q96JN2 1154 aa22.21■■□□□ 1.15
CNOT3-208ENST00000613073 TMF1P82094 1093 aa22.21■■□□□ 1.15
CNOT3-208ENST00000613073 TMC1Q8TDI8 760 aa22.2■■□□□ 1.14
CNOT3-208ENST00000613073 COL17A1Q9UMD9 1497 aaPredicted RBP22.2■■□□□ 1.14
CNOT3-208ENST00000613073 WASHC2CQ9Y4E1 1318 aa22.19■■□□□ 1.14
CNOT3-208ENST00000613073 NEO1Q92859 1461 aa22.19■■□□□ 1.14
CNOT3-208ENST00000613073 RTN4Q9NQC3 1192 aaKnown RBP22.19■■□□□ 1.14
CNOT3-208ENST00000613073 PPP4R2Q9NY27 417 aa22.19■■□□□ 1.14
CNOT3-208ENST00000613073 ABCA6Q8N139 1617 aa22.19■■□□□ 1.14
CNOT3-208ENST00000613073 RNF17Q9BXT8 1623 aaKnown RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms