RNA–Protein interactions for RNA: ENST00000607482.5

CTSA-217, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 403 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-217ENST00000607482 KDM5DQ9BY66 1539 aa29.62■■■□□ 2.33
CTSA-217ENST00000607482 KIF15Q9NS87 1388 aa29.61■■■□□ 2.33
CTSA-217ENST00000607482 DAPK1P53355 1430 aa29.61■■■□□ 2.33
CTSA-217ENST00000607482 SHANK2Q9UPX8 1470 aa29.59■■■□□ 2.33
CTSA-217ENST00000607482 DUOX2Q9NRD8 1548 aa29.59■■■□□ 2.33
CTSA-217ENST00000607482 TCOF1Q13428 1488 aaKnown RBP29.58■■■□□ 2.33
CTSA-217ENST00000607482 FAM135AQ9P2D6 1515 aa29.58■■■□□ 2.33
CTSA-217ENST00000607482 ANKRD30AQ9BXX3 1397 aa29.56■■■□□ 2.32
CTSA-217ENST00000607482 FBXO31Q5XUX0 539 aaPredicted RBP29.56■■■□□ 2.32
CTSA-217ENST00000607482 DNMT1P26358 1616 aaKnown RBP29.54■■■□□ 2.32
CTSA-217ENST00000607482 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.54■■■□□ 2.321e-6■□□□□ 9.5
CTSA-217ENST00000607482 CROCC2H7BZ55 1655 aa29.53■■■□□ 2.32
CTSA-217ENST00000607482 TNRQ92752 1358 aa29.53■■■□□ 2.32
CTSA-217ENST00000607482 PPARGC1BQ86YN6 1023 aaKnown RBP29.53■■■□□ 2.32
CTSA-217ENST00000607482 EIF2AK4Q9P2K8 1649 aaKnown RBP29.53■■■□□ 2.32
CTSA-217ENST00000607482 MYO3AQ8NEV4 1616 aa29.52■■■□□ 2.32
CTSA-217ENST00000607482 PZPP20742 1482 aa29.51■■■□□ 2.31
CTSA-217ENST00000607482 FBXO41Q8TF61 875 aa29.51■■■□□ 2.31
CTSA-217ENST00000607482 CAMSAP1Q5T5Y3 1602 aa29.51■■■□□ 2.31
CTSA-217ENST00000607482 STRCQ7RTU9 1775 aa29.49■■■□□ 2.31
CTSA-217ENST00000607482 RNF17Q9BXT8 1623 aaKnown RBP29.49■■■□□ 2.31
CTSA-217ENST00000607482 NCOA1Q15788 1441 aa29.49■■■□□ 2.31
CTSA-217ENST00000607482 ERBINQ96RT1 1412 aa29.49■■■□□ 2.31
CTSA-217ENST00000607482 CEP170BQ9Y4F5 1589 aaPredicted RBP29.48■■■□□ 2.31
CTSA-217ENST00000607482 KANK1Q14678 1352 aa29.48■■■□□ 2.31
CTSA-217ENST00000607482 NCKAP5LQ9HCH0 1330 aa29.47■■■□□ 2.31
CTSA-217ENST00000607482 CERKQ8TCT0 537 aa29.46■■■□□ 2.31
CTSA-217ENST00000607482 PTPRTO14522 1441 aa29.45■■■□□ 2.31
CTSA-217ENST00000607482 PKD2Q13563 968 aa29.45■■■□□ 2.31
CTSA-217ENST00000607482 ABCC3O15438 1527 aa29.45■■■□□ 2.3
CTSA-217ENST00000607482 A2ML1A8K2U0 1454 aa29.44■■■□□ 2.3
CTSA-217ENST00000607482 ZC3H13Q5T200 1668 aaKnown RBP29.43■■■□□ 2.3
CTSA-217ENST00000607482 ZNF142P52746 1687 aaPredicted RBP29.42■■■□□ 2.3
CTSA-217ENST00000607482 THEMISQ8N1K5 641 aaPredicted RBP29.4■■■□□ 2.3
CTSA-217ENST00000607482 ITGAEP38570 1179 aa29.39■■■□□ 2.3
CTSA-217ENST00000607482 PLA2R1Q13018 1463 aa29.38■■■□□ 2.29
CTSA-217ENST00000607482 NLRP1Q9C000 1473 aa29.36■■■□□ 2.29
CTSA-217ENST00000607482 MROH1Q8NDA8 1641 aa29.34■■■□□ 2.29
CTSA-217ENST00000607482 CEP152O94986 1710 aa29.34■■■□□ 2.29
CTSA-217ENST00000607482 ANKLE2Q86XL3 938 aa29.33■■■□□ 2.29
CTSA-217ENST00000607482 PRDM15P57071 1507 aaPredicted RBP29.32■■■□□ 2.28
CTSA-217ENST00000607482 ADGRL2O95490 1459 aa29.32■■■□□ 2.28
CTSA-217ENST00000607482 ERVK-7P63135 1459 aa29.3■■■□□ 2.28
CTSA-217ENST00000607482 UGGT1Q9NYU2 1555 aa29.3■■■□□ 2.28
CTSA-217ENST00000607482 ANKRD50Q9ULJ7 1429 aa29.29■■■□□ 2.28
CTSA-217ENST00000607482 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.29■■■□□ 2.28
CTSA-217ENST00000607482 CFAP65Q6ZU64 1925 aaKnown RBP29.28■■■□□ 2.28
CTSA-217ENST00000607482 STAG3Q9UJ98 1225 aa29.27■■■□□ 2.28
CTSA-217ENST00000607482 SPATA31D1Q6ZQQ2 1576 aa29.26■■■□□ 2.28
CTSA-217ENST00000607482 DEPDC5O75140 1603 aa29.25■■■□□ 2.27
CTSA-217ENST00000607482 ARHGAP31Q2M1Z3 1444 aa29.25■■■□□ 2.27
CTSA-217ENST00000607482 ZNF335Q9H4Z2 1342 aaPredicted RBP29.21■■■□□ 2.27
CTSA-217ENST00000607482 ROCK1Q13464 1354 aa29.2■■■□□ 2.26
CTSA-217ENST00000607482 POLR1AO95602 1720 aaPredicted RBP29.17■■■□□ 2.26
CTSA-217ENST00000607482 LMTK2Q8IWU2 1503 aa29.15■■■□□ 2.26
CTSA-217ENST00000607482 EID1Q9Y6B2 187 aa29.15■■■□□ 2.26
CTSA-217ENST00000607482 LTBP4Q8N2S1 1624 aa29.12■■■□□ 2.25
CTSA-217ENST00000607482 NPHP4O75161 1426 aaPredicted RBP29.12■■■□□ 2.25
CTSA-217ENST00000607482 VWDEQ8N2E2 1590 aa29.11■■■□□ 2.25
CTSA-217ENST00000607482 TXNDC2Q86VQ3 553 aa29.11■■■□□ 2.25
CTSA-217ENST00000607482 EFCAB6Q5THR3 1501 aa29.1■■■□□ 2.25
CTSA-217ENST00000607482 IDI1Q13907 227 aa29.08■■■□□ 2.25
CTSA-217ENST00000607482 NEURL4Q96JN8 1562 aa29.07■■■□□ 2.24
CTSA-217ENST00000607482 SLC52A1Q9NWF4 448 aa29.07■■■□□ 2.24
CTSA-217ENST00000607482 UBR1Q8IWV7 1749 aa29.06■■■□□ 2.24
CTSA-217ENST00000607482 NUP155O75694 1391 aa29.06■■■□□ 2.24
CTSA-217ENST00000607482 IQSEC2Q5JU85 1478 aa29.04■■■□□ 2.24
CTSA-217ENST00000607482 MED14O60244 1454 aa29.04■■■□□ 2.24
CTSA-217ENST00000607482 RPRD2Q5VT52 1461 aaKnown RBP29.04■■■□□ 2.24
CTSA-217ENST00000607482 RRBP1Q9P2E9 1410 aaKnown RBP29.03■■■□□ 2.24
CTSA-217ENST00000607482 UBAP1LF5GYI3 381 aa29.03■■■□□ 2.24
CTSA-217ENST00000607482 SCAF11Q99590 1463 aaKnown RBP29.03■■■□□ 2.24
CTSA-217ENST00000607482 PIK3C2BO00750 1634 aa29.02■■■□□ 2.24
CTSA-217ENST00000607482 BCANQ96GW7 911 aa29.01■■■□□ 2.23
CTSA-217ENST00000607482 IQGAP1P46940 1657 aa29.01■■■□□ 2.23
CTSA-217ENST00000607482 UNC13BO14795 1591 aa29.01■■■□□ 2.23
CTSA-217ENST00000607482 TET3O43151 1660 aa29■■■□□ 2.23
CTSA-217ENST00000607482 NOS1P29475 1434 aa29■■■□□ 2.23
CTSA-217ENST00000607482 CHGAP10645 457 aaKnown RBP28.99■■■□□ 2.23
CTSA-217ENST00000607482 LTKP29376 864 aa28.99■■■□□ 2.23
CTSA-217ENST00000607482 TMEM2Q9UHN6 1383 aa28.99■■■□□ 2.23
CTSA-217ENST00000607482 CPS1P31327 1500 aa28.97■■■□□ 2.23
CTSA-217ENST00000607482 SYNMO15061 1565 aa28.96■■■□□ 2.23
CTSA-217ENST00000607482 SLIT1O75093 1534 aa28.96■■■□□ 2.23
CTSA-217ENST00000607482 HDGFP51858 240 aaKnown RBP28.95■■■□□ 2.22
CTSA-217ENST00000607482 GCC2Q8IWJ2 1684 aa28.94■■■□□ 2.22
CTSA-217ENST00000607482 ARHGAP23Q9P227 1491 aa28.94■■■□□ 2.22
CTSA-217ENST00000607482 SCAF1Q9H7N4 1312 aaKnown RBP28.94■■■□□ 2.22
CTSA-217ENST00000607482 PPP1R15AO75807 674 aaPredicted RBP28.93■■■□□ 2.22
CTSA-217ENST00000607482 IQGAP3Q86VI3 1631 aa28.91■■■□□ 2.22
CTSA-217ENST00000607482 ADGRB3O60242 1522 aa28.9■■■□□ 2.22
CTSA-217ENST00000607482 TRIM52Q96A61 297 aa28.9■■■□□ 2.22
CTSA-217ENST00000607482 KDM5AP29375 1690 aaKnown RBP28.89■■■□□ 2.22
CTSA-217ENST00000607482 TOM1O60784 492 aa28.89■■■□□ 2.22
CTSA-217ENST00000607482 SENP3Q9H4L4 574 aaPredicted RBP28.86■■■□□ 2.21
CTSA-217ENST00000607482 PIP4K2BP78356 416 aa28.85■■■□□ 2.21
CTSA-217ENST00000607482 E9PCH4 1651 aa28.85■■■□□ 2.21
CTSA-217ENST00000607482 SLC26A8Q96RN1 970 aa28.84■■■□□ 2.21
CTSA-217ENST00000607482 NAIPQ13075 1403 aa28.84■■■□□ 2.21
CTSA-217ENST00000607482 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms