RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 POTEGQ6S5H5 508 aa8.47□□□□□ -1.05
CKS1BP3-201ENST00000600888 POTEMA6NI47 508 aa8.46□□□□□ -1.06
CKS1BP3-201ENST00000600888 PTPREP23469 700 aa8.46□□□□□ -1.06
CKS1BP3-201ENST00000600888 POTEEQ6S8J3 1075 aa8.46□□□□□ -1.06
CKS1BP3-201ENST00000600888 ARHGAP33O14559 1287 aa8.45□□□□□ -1.06
CKS1BP3-201ENST00000600888 GPIHBP1Q8IV16 184 aa8.44□□□□□ -1.06
CKS1BP3-201ENST00000600888 KCNK17Q96T54 332 aa8.44□□□□□ -1.06
CKS1BP3-201ENST00000600888 CDHR5Q9HBB8 845 aa8.44□□□□□ -1.06
CKS1BP3-201ENST00000600888 NPDC1Q9NQX5 325 aaPredicted RBP8.44□□□□□ -1.06
CKS1BP3-201ENST00000600888 AXIN2Q9Y2T1 843 aa8.44□□□□□ -1.06
CKS1BP3-201ENST00000600888 COL9A1P20849 921 aa8.43□□□□□ -1.06
CKS1BP3-201ENST00000600888 PBX2P40425 430 aa8.43□□□□□ -1.06
CKS1BP3-201ENST00000600888 PSEN2P49810 448 aa8.43□□□□□ -1.06
CKS1BP3-201ENST00000600888 PTGDRQ13258 359 aa8.42□□□□□ -1.06
CKS1BP3-201ENST00000600888 KCNH8Q96L42 1107 aa8.42□□□□□ -1.06
CKS1BP3-201ENST00000600888 PPP1R3GB7ZBB8 358 aa8.41□□□□□ -1.06
CKS1BP3-201ENST00000600888 FCHSD2O94868 740 aa8.41□□□□□ -1.06
CKS1BP3-201ENST00000600888 CERKQ8TCT0 537 aa8.41□□□□□ -1.06
CKS1BP3-201ENST00000600888 ZC3H15Q8WU90 426 aaKnown RBP8.41□□□□□ -1.06
CKS1BP3-201ENST00000600888 GPR37O15354 613 aa8.4□□□□□ -1.06
CKS1BP3-201ENST00000600888 DMRTA1Q5VZB9 504 aa8.39□□□□□ -1.07
CKS1BP3-201ENST00000600888 HIC1Q14526 733 aa8.38□□□□□ -1.07
CKS1BP3-201ENST00000600888 CDAN1Q8IWY9 1227 aa8.38□□□□□ -1.07
CKS1BP3-201ENST00000600888 GNPATO15228 680 aa8.37□□□□□ -1.07
CKS1BP3-201ENST00000600888 PRSS12P56730 875 aa8.37□□□□□ -1.07
CKS1BP3-201ENST00000600888 ZBED2Q9BTP6 218 aa8.37□□□□□ -1.07
CKS1BP3-201ENST00000600888 LSM11P83369 360 aaKnown RBP eCLIP8.36□□□□□ -1.07
CKS1BP3-201ENST00000600888 CDCA7LQ96GN5 454 aa8.36□□□□□ -1.07
CKS1BP3-201ENST00000600888 SLC4A5Q9BY07 1137 aa8.36□□□□□ -1.07
CKS1BP3-201ENST00000600888 KRTAP3-3Q9BYR6 98 aa8.36□□□□□ -1.07
CKS1BP3-201ENST00000600888 KRTAP3-2Q9BYR7 98 aa8.36□□□□□ -1.07
CKS1BP3-201ENST00000600888 ZMYND10O75800 440 aa8.35□□□□□ -1.07
CKS1BP3-201ENST00000600888 PROX2Q3B8N5 592 aa8.35□□□□□ -1.07
CKS1BP3-201ENST00000600888 ONECUT3O60422 494 aaPredicted RBP8.34□□□□□ -1.07
CKS1BP3-201ENST00000600888 FECHP22830 423 aa8.34□□□□□ -1.07
CKS1BP3-201ENST00000600888 TPRNQ4KMQ1 711 aa8.34□□□□□ -1.07
CKS1BP3-201ENST00000600888 BARGINQ6ZT62 677 aa8.34□□□□□ -1.07
CKS1BP3-201ENST00000600888 ANKRD13DQ6ZTN6 518 aa8.34□□□□□ -1.07
CKS1BP3-201ENST00000600888 TTC13Q8NBP0 860 aa8.34□□□□□ -1.07
CKS1BP3-201ENST00000600888 RBM27Q9P2N5 1060 aaKnown RBP8.34□□□□□ -1.07
CKS1BP3-201ENST00000600888 VPS9D1Q9Y2B5 631 aa8.34□□□□□ -1.07
CKS1BP3-201ENST00000600888 TRIM6-TRIM34B2RNG4 842 aa8.33□□□□□ -1.08
CKS1BP3-201ENST00000600888 TK2O00142 265 aa8.33□□□□□ -1.08
CKS1BP3-201ENST00000600888 PADI6Q6TGC4 694 aa8.33□□□□□ -1.08
CKS1BP3-201ENST00000600888 FAM198AQ9UFP1 575 aa8.33□□□□□ -1.08
CKS1BP3-201ENST00000600888 TSKSQ9UJT2 592 aa8.33□□□□□ -1.08
CKS1BP3-201ENST00000600888 PCDH10Q9P2E7 1040 aa8.32□□□□□ -1.08
CKS1BP3-201ENST00000600888 ADGRD1Q6QNK2 874 aa8.31□□□□□ -1.08
CKS1BP3-201ENST00000600888 PACS2Q86VP3 889 aa8.31□□□□□ -1.08
CKS1BP3-201ENST00000600888 KIAA1468Q9P260 1216 aa8.31□□□□□ -1.08
CKS1BP3-201ENST00000600888 KRI1Q8N9T8 703 aaKnown RBP8.3□□□□□ -1.08
CKS1BP3-201ENST00000600888 RABGEF1Q9UJ41 708 aa8.3□□□□□ -1.08
CKS1BP3-201ENST00000600888 MINK1Q8N4C8 1332 aaPredicted RBP8.29□□□□□ -1.08
CKS1BP3-201ENST00000600888 PRKCSHP14314 528 aaPredicted RBP8.29□□□□□ -1.08
CKS1BP3-201ENST00000600888 MAP2K5Q13163 448 aa8.29□□□□□ -1.08
CKS1BP3-201ENST00000600888 IRF6O14896 467 aa8.28□□□□□ -1.08
CKS1BP3-201ENST00000600888 ADGRG1Q9Y653 693 aa8.28□□□□□ -1.08
CKS1BP3-201ENST00000600888 BHMG1C9JSJ3 638 aaPredicted RBP8.27□□□□□ -1.09
CKS1BP3-201ENST00000600888 C3orf80F5H4A9 247 aa8.27□□□□□ -1.09
CKS1BP3-201ENST00000600888 HRO43593 1189 aa8.27□□□□□ -1.09
CKS1BP3-201ENST00000600888 FAM161AQ3B820 660 aa8.27□□□□□ -1.09
CKS1BP3-201ENST00000600888 TATDN2Q93075 761 aa8.27□□□□□ -1.09
CKS1BP3-201ENST00000600888 OATP04181 439 aa8.26□□□□□ -1.09
CKS1BP3-201ENST00000600888 NUDT18Q6ZVK8 323 aa8.26□□□□□ -1.09
CKS1BP3-201ENST00000600888 SLC24A3Q9HC58 644 aa8.26□□□□□ -1.09
CKS1BP3-201ENST00000600888 PNMA3Q9UL41 463 aa8.26□□□□□ -1.09
CKS1BP3-201ENST00000600888 NBPF26B4DH59 902 aa8.25□□□□□ -1.09
CKS1BP3-201ENST00000600888 SMAPO00193 183 aa8.25□□□□□ -1.09
CKS1BP3-201ENST00000600888 EYA1Q99502 592 aa8.25□□□□□ -1.09
CKS1BP3-201ENST00000600888 RBM46Q8TBY0 533 aaKnown RBP8.24□□□□□ -1.09
CKS1BP3-201ENST00000600888 CCDC102AQ96A19 550 aa8.24□□□□□ -1.09
CKS1BP3-201ENST00000600888 NBPF3Q9H094 633 aa8.24□□□□□ -1.09
CKS1BP3-201ENST00000600888 NISCHQ9Y2I1 1504 aa8.24□□□□□ -1.09
CKS1BP3-201ENST00000600888 METTL3Q86U44 580 aaKnown RBP8.23□□□□□ -1.09
CKS1BP3-201ENST00000600888 MRPL50Q8N5N7 158 aaKnown RBP8.23□□□□□ -1.09
CKS1BP3-201ENST00000600888 PXYLP1Q8TE99 480 aa8.23□□□□□ -1.09
CKS1BP3-201ENST00000600888 AK7Q96M32 723 aa8.23□□□□□ -1.09
CKS1BP3-201ENST00000600888 STAC3Q96MF2 364 aa8.23□□□□□ -1.09
CKS1BP3-201ENST00000600888 SEPT9Q9UHD8 586 aaPredicted RBP8.23□□□□□ -1.09
CKS1BP3-201ENST00000600888 LAPTM4BQ86VI4 370 aa8.22□□□□□ -1.09
CKS1BP3-201ENST00000600888 FAM98CQ17RN3 349 aaKnown RBP8.21□□□□□ -1.1
CKS1BP3-201ENST00000600888 PHOX2BQ99453 314 aa8.21□□□□□ -1.1
CKS1BP3-201ENST00000600888 RCCD1A6NED2 376 aa8.19□□□□□ -1.1
CKS1BP3-201ENST00000600888 TRIM66O15016 1216 aa8.19□□□□□ -1.1
CKS1BP3-201ENST00000600888 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.18□□□□□ -1.1
CKS1BP3-201ENST00000600888 SPNS2Q8IVW8 549 aa8.18□□□□□ -1.1
CKS1BP3-201ENST00000600888 ZFRQ96KR1 1074 aaKnown RBP8.18□□□□□ -1.1
CKS1BP3-201ENST00000600888 GOLGA8CPA6NN73 597 aa8.17□□□□□ -1.1
CKS1BP3-201ENST00000600888 DNAJB2P25686 324 aa8.17□□□□□ -1.1
CKS1BP3-201ENST00000600888 HDGFP51858 240 aaKnown RBP8.16□□□□□ -1.1
CKS1BP3-201ENST00000600888 NLRP7Q8WX94 980 aa8.16□□□□□ -1.1
CKS1BP3-201ENST00000600888 AMHR2Q16671 573 aa8.15□□□□□ -1.1
CKS1BP3-201ENST00000600888 TMEM134Q9H6X4 195 aa8.15□□□□□ -1.1
CKS1BP3-201ENST00000600888 SWT1Q5T5J6 900 aaKnown RBP8.14□□□□□ -1.11
CKS1BP3-201ENST00000600888 SAMD7Q7Z3H4 446 aa8.14□□□□□ -1.11
CKS1BP3-201ENST00000600888 WNT2BQ93097 391 aa8.14□□□□□ -1.11
CKS1BP3-201ENST00000600888 MYT1LQ9UL68 1186 aa8.14□□□□□ -1.11
CKS1BP3-201ENST00000600888 MDM2Q00987 491 aaPredicted RBP8.13□□□□□ -1.11
CKS1BP3-201ENST00000600888 PDE4DQ08499 809 aa8.13□□□□□ -1.11
CKS1BP3-201ENST00000600888 DAXXQ9UER7 740 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms