RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 ZNF335Q9H4Z2 1342 aaPredicted RBP25.35■■□□□ 1.65
USHBP1-206ENST00000596436 RSPH4AQ5TD94 716 aa25.34■■□□□ 1.65
USHBP1-206ENST00000596436 PZPP20742 1482 aa25.34■■□□□ 1.65
USHBP1-206ENST00000596436 DISP3Q9P2K9 1392 aa25.32■■□□□ 1.64
USHBP1-206ENST00000596436 SPATA31D1Q6ZQQ2 1576 aa25.31■■□□□ 1.64
USHBP1-206ENST00000596436 POLR1AO95602 1720 aaPredicted RBP25.3■■□□□ 1.64
USHBP1-206ENST00000596436 VPS8Q8N3P4 1428 aa25.29■■□□□ 1.64
USHBP1-206ENST00000596436 NEURL4Q96JN8 1562 aa25.29■■□□□ 1.64
USHBP1-206ENST00000596436 KIF3BO15066 747 aa25.28■■□□□ 1.64
USHBP1-206ENST00000596436 TNRQ92752 1358 aa25.28■■□□□ 1.64
USHBP1-206ENST00000596436 ILDR2Q71H61 639 aa25.27■■□□□ 1.64
USHBP1-206ENST00000596436 LRRC9Q6ZRR7 1453 aa25.26■■□□□ 1.63
USHBP1-206ENST00000596436 MAST1Q9Y2H9 1570 aa25.26■■□□□ 1.63
USHBP1-206ENST00000596436 FBXO31Q5XUX0 539 aaPredicted RBP25.25■■□□□ 1.63
USHBP1-206ENST00000596436 RNF17Q9BXT8 1623 aaKnown RBP25.25■■□□□ 1.63
USHBP1-206ENST00000596436 NLRP1Q9C000 1473 aa25.22■■□□□ 1.63
USHBP1-206ENST00000596436 MAP3K1Q13233 1512 aa25.22■■□□□ 1.63
USHBP1-206ENST00000596436 WASHC2CQ9Y4E1 1318 aa25.21■■□□□ 1.63
USHBP1-206ENST00000596436 MIA2Q96PC5 1412 aa25.2■■□□□ 1.63
USHBP1-206ENST00000596436 ZC3H13Q5T200 1668 aaKnown RBP25.2■■□□□ 1.62
USHBP1-206ENST00000596436 EIF2AK4Q9P2K8 1649 aaKnown RBP25.19■■□□□ 1.62
USHBP1-206ENST00000596436 DEPDC5O75140 1603 aa25.19■■□□□ 1.62
USHBP1-206ENST00000596436 CPS1P31327 1500 aa25.18■■□□□ 1.62
USHBP1-206ENST00000596436 UBAP1LF5GYI3 381 aa25.18■■□□□ 1.62
USHBP1-206ENST00000596436 MED14O60244 1454 aa25.17■■□□□ 1.62
USHBP1-206ENST00000596436 TSPY4P0CV99 314 aa25.17■■□□□ 1.62
USHBP1-206ENST00000596436 TSPY10P0CW01 314 aa25.17■■□□□ 1.62
USHBP1-206ENST00000596436 ABCC3O15438 1527 aa25.17■■□□□ 1.62
USHBP1-206ENST00000596436 MROH1Q8NDA8 1641 aa25.16■■□□□ 1.62
USHBP1-206ENST00000596436 SOCS7O14512 581 aa25.16■■□□□ 1.62
USHBP1-206ENST00000596436 UGGT1Q9NYU2 1555 aa25.16■■□□□ 1.62
USHBP1-206ENST00000596436 SHANK2Q9UPX8 1470 aa25.15■■□□□ 1.62
USHBP1-206ENST00000596436 VWDEQ8N2E2 1590 aa25.14■■□□□ 1.62
USHBP1-206ENST00000596436 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.13■■□□□ 1.61
USHBP1-206ENST00000596436 THEMISQ8N1K5 641 aaPredicted RBP25.12■■□□□ 1.61
USHBP1-206ENST00000596436 MYOM3Q5VTT5 1437 aa25.12■■□□□ 1.61
USHBP1-206ENST00000596436 ANKLE2Q86XL3 938 aa25.1■■□□□ 1.61
USHBP1-206ENST00000596436 KANK4Q5T7N3 995 aaPredicted RBP25.09■■□□□ 1.61
USHBP1-206ENST00000596436 ERVK-7P63135 1459 aa25.09■■□□□ 1.61
USHBP1-206ENST00000596436 NPHP4O75161 1426 aaPredicted RBP25.08■■□□□ 1.61
USHBP1-206ENST00000596436 IQGAP1P46940 1657 aa25.07■■□□□ 1.6
USHBP1-206ENST00000596436 DUOX2Q9NRD8 1548 aa25.06■■□□□ 1.6
USHBP1-206ENST00000596436 CEP152O94986 1710 aa25.05■■□□□ 1.6
USHBP1-206ENST00000596436 ALKQ9UM73 1620 aa25.04■■□□□ 1.6
USHBP1-206ENST00000596436 CROCC2H7BZ55 1655 aa25.04■■□□□ 1.6
USHBP1-206ENST00000596436 PRDM15P57071 1507 aaPredicted RBP25.02■■□□□ 1.6
USHBP1-206ENST00000596436 UBR1Q8IWV7 1749 aa25.02■■□□□ 1.6
USHBP1-206ENST00000596436 STRCP1A6NGW2 1772 aa25■■□□□ 1.59
USHBP1-206ENST00000596436 TOM1O60784 492 aa24.99■■□□□ 1.59
USHBP1-206ENST00000596436 ARHGAP31Q2M1Z3 1444 aa24.99■■□□□ 1.59
USHBP1-206ENST00000596436 SYNMO15061 1565 aa24.97■■□□□ 1.59
USHBP1-206ENST00000596436 ERBINQ96RT1 1412 aa24.97■■□□□ 1.59
USHBP1-206ENST00000596436 ABCC5O15440 1437 aa24.96■■□□□ 1.59
USHBP1-206ENST00000596436 HSPA1LP34931 641 aa24.96■■□□□ 1.59
USHBP1-206ENST00000596436 ARHGAP23Q9P227 1491 aa24.96■■□□□ 1.59
USHBP1-206ENST00000596436 PTPN23Q9H3S7 1636 aa24.95■■□□□ 1.58
USHBP1-206ENST00000596436 SLIT1O75093 1534 aa24.95■■□□□ 1.58
USHBP1-206ENST00000596436 KIF15Q9NS87 1388 aa24.94■■□□□ 1.58
USHBP1-206ENST00000596436 MED1Q15648 1581 aaPredicted RBP24.94■■□□□ 1.58
USHBP1-206ENST00000596436 LRRC7Q96NW7 1537 aa24.94■■□□□ 1.58
USHBP1-206ENST00000596436 SCAF11Q99590 1463 aaKnown RBP24.92■■□□□ 1.58
USHBP1-206ENST00000596436 CFAP65Q6ZU64 1925 aaKnown RBP24.91■■□□□ 1.58
USHBP1-206ENST00000596436 PIP4K2BP78356 416 aa24.91■■□□□ 1.58
USHBP1-206ENST00000596436 DAPK1P53355 1430 aa24.89■■□□□ 1.58
USHBP1-206ENST00000596436 KDM5AP29375 1690 aaKnown RBP24.88■■□□□ 1.57
USHBP1-206ENST00000596436 SCAF1Q9H7N4 1312 aaKnown RBP24.87■■□□□ 1.57
USHBP1-206ENST00000596436 LMTK2Q8IWU2 1503 aa24.87■■□□□ 1.57
USHBP1-206ENST00000596436 FGD6Q6ZV73 1430 aa24.86■■□□□ 1.57
USHBP1-206ENST00000596436 PIK3C2BO00750 1634 aa24.86■■□□□ 1.57
USHBP1-206ENST00000596436 APLP2Q06481 763 aa24.85■■□□□ 1.57
USHBP1-206ENST00000596436 LTKP29376 864 aa24.84■■□□□ 1.57
USHBP1-206ENST00000596436 RRP7BPQ9NSQ0 103 aa24.83■■□□□ 1.57
USHBP1-206ENST00000596436 XIRP1Q702N8 1843 aaKnown RBP24.82■■□□□ 1.56
USHBP1-206ENST00000596436 TMEM2Q9UHN6 1383 aa24.8■■□□□ 1.56
USHBP1-206ENST00000596436 TXNDC2Q86VQ3 553 aa24.79■■□□□ 1.56
USHBP1-206ENST00000596436 KANK1Q14678 1352 aa24.78■■□□□ 1.56
USHBP1-206ENST00000596436 ANKRD30AQ9BXX3 1397 aa24.78■■□□□ 1.56
USHBP1-206ENST00000596436 ADGRL2O95490 1459 aa24.77■■□□□ 1.56
USHBP1-206ENST00000596436 EFCAB6Q5THR3 1501 aa24.76■■□□□ 1.55
USHBP1-206ENST00000596436 NOS1P29475 1434 aa24.76■■□□□ 1.55
USHBP1-206ENST00000596436 EID1Q9Y6B2 187 aa24.74■■□□□ 1.55
USHBP1-206ENST00000596436 TET3O43151 1660 aa24.74■■□□□ 1.55
USHBP1-206ENST00000596436 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.73■■□□□ 1.55
USHBP1-206ENST00000596436 IDI1Q13907 227 aa24.71■■□□□ 1.55
USHBP1-206ENST00000596436 ADGRB3O60242 1522 aa24.71■■□□□ 1.55
USHBP1-206ENST00000596436 CHIC2Q9UKJ5 165 aa24.68■■□□□ 1.54
USHBP1-206ENST00000596436 RPRD2Q5VT52 1461 aaKnown RBP24.66■■□□□ 1.54
USHBP1-206ENST00000596436 NWD1Q149M9 1564 aa24.66■■□□□ 1.54
USHBP1-206ENST00000596436 FAM135BQ49AJ0 1406 aa24.64■■□□□ 1.54
USHBP1-206ENST00000596436 STAG3Q9UJ98 1225 aa24.63■■□□□ 1.53
USHBP1-206ENST00000596436 SLC52A1Q9NWF4 448 aa24.62■■□□□ 1.53
USHBP1-206ENST00000596436 TMEM94Q12767 1356 aa24.62■■□□□ 1.53
USHBP1-206ENST00000596436 ANKRD50Q9ULJ7 1429 aa24.61■■□□□ 1.53
USHBP1-206ENST00000596436 KCNA6P17658 529 aa24.61■■□□□ 1.53
USHBP1-206ENST00000596436 NKTRP30414 1462 aaKnown RBP24.61■■□□□ 1.53
USHBP1-206ENST00000596436 PPARGC1BQ86YN6 1023 aaKnown RBP24.59■■□□□ 1.53
USHBP1-206ENST00000596436 PHF23Q9BUL5 403 aaPredicted RBP24.59■■□□□ 1.53
USHBP1-206ENST00000596436 ZFYVE9O95405 1425 aa24.59■■□□□ 1.53
USHBP1-206ENST00000596436 UNC13BO14795 1591 aa24.58■■□□□ 1.52
USHBP1-206ENST00000596436 GCC2Q8IWJ2 1684 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms