RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 C3orf67Q6ZVT6 689 aa14.47□□□□□ -0.09
SMAD4-209ENST00000589941 OTUD5Q96G74 571 aa14.47□□□□□ -0.09
SMAD4-209ENST00000589941 BIVM-ERCC5R4GMW8 1640 aa14.47□□□□□ -0.09
SMAD4-209ENST00000589941 GLI2P10070 1586 aa14.47□□□□□ -0.09
SMAD4-209ENST00000589941 KIF21BO75037 1637 aa14.45□□□□□ -0.1
SMAD4-209ENST00000589941 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.44□□□□□ -0.1
SMAD4-209ENST00000589941 TOP2BQ02880 1626 aa14.44□□□□□ -0.1
SMAD4-209ENST00000589941 SCUBE2Q9NQ36 999 aa14.43□□□□□ -0.1
SMAD4-209ENST00000589941 MAMSTRQ6ZN01 415 aa14.42□□□□□ -0.1
SMAD4-209ENST00000589941 JPH4Q96JJ6 628 aa14.42□□□□□ -0.1
SMAD4-209ENST00000589941 NCKAP5LQ9HCH0 1330 aa14.41□□□□□ -0.1
SMAD4-209ENST00000589941 ABCC2Q92887 1545 aa14.41□□□□□ -0.1
SMAD4-209ENST00000589941 ILDR2Q71H61 639 aa14.4□□□□□ -0.1
SMAD4-209ENST00000589941 WRNQ14191 1432 aaPredicted RBP eCLIP14.38□□□□□ -0.11
SMAD4-209ENST00000589941 ASXL2Q76L83 1435 aa14.38□□□□□ -0.11
SMAD4-209ENST00000589941 C2orf72A6NCS6 295 aa14.37□□□□□ -0.11
SMAD4-209ENST00000589941 KIF3CO14782 793 aa14.37□□□□□ -0.11
SMAD4-209ENST00000589941 CRISPLD2Q9H0B8 497 aa14.37□□□□□ -0.11
SMAD4-209ENST00000589941 SLAIN1Q8ND83 568 aa14.36□□□□□ -0.11
SMAD4-209ENST00000589941 GPHNQ9NQX3 736 aaPredicted RBP14.33□□□□□ -0.12
SMAD4-209ENST00000589941 TMC2Q8TDI7 906 aa14.32□□□□□ -0.12
SMAD4-209ENST00000589941 EPRSP07814 1512 aaKnown RBP14.31□□□□□ -0.12
SMAD4-209ENST00000589941 ZCCHC11Q5TAX3 1644 aaKnown RBP14.31□□□□□ -0.12
SMAD4-209ENST00000589941 SOCS7O14512 581 aa14.31□□□□□ -0.12
SMAD4-209ENST00000589941 PDE4AP27815 886 aa14.31□□□□□ -0.12
SMAD4-209ENST00000589941 LARP6Q9BRS8 491 aaKnown RBP14.31□□□□□ -0.12
SMAD4-209ENST00000589941 PLB1Q6P1J6 1458 aa14.31□□□□□ -0.12
SMAD4-209ENST00000589941 ADAMTSL3P82987 1691 aa14.3□□□□□ -0.12
SMAD4-209ENST00000589941 KDM2AQ9Y2K7 1162 aa14.29□□□□□ -0.12
SMAD4-209ENST00000589941 PCF11O94913 1555 aaKnown RBP14.29□□□□□ -0.12
SMAD4-209ENST00000589941 SPATA31D1Q6ZQQ2 1576 aa14.29□□□□□ -0.12
SMAD4-209ENST00000589941 DSG2Q14126 1118 aa14.28□□□□□ -0.12
SMAD4-209ENST00000589941 TEX14Q8IWB6 1497 aa14.28□□□□□ -0.12
SMAD4-209ENST00000589941 KIAA0586Q9BVV6 1533 aa14.26□□□□□ -0.13
SMAD4-209ENST00000589941 MFSD10Q14728 455 aa14.26□□□□□ -0.13
SMAD4-209ENST00000589941 DISP3Q9P2K9 1392 aa14.25□□□□□ -0.13
SMAD4-209ENST00000589941 FOXK1P85037 733 aa14.25□□□□□ -0.13
SMAD4-209ENST00000589941 PTPRMP28827 1452 aa14.24□□□□□ -0.13
SMAD4-209ENST00000589941 MADDQ8WXG6 1647 aa14.23□□□□□ -0.13
SMAD4-209ENST00000589941 TTBK1Q5TCY1 1321 aaPredicted RBP14.23□□□□□ -0.13
SMAD4-209ENST00000589941 PPP1R15BQ5SWA1 713 aa14.23□□□□□ -0.13
SMAD4-209ENST00000589941 DDX27Q96GQ7 796 aaKnown RBP14.23□□□□□ -0.13
SMAD4-209ENST00000589941 PTPRGP23470 1445 aa14.23□□□□□ -0.13
SMAD4-209ENST00000589941 SLC24A1O60721 1099 aa14.22□□□□□ -0.13
SMAD4-209ENST00000589941 PLPP6Q8IY26 295 aa14.22□□□□□ -0.13
SMAD4-209ENST00000589941 UHRF1BP1LA0JNW5 1464 aa14.22□□□□□ -0.13
SMAD4-209ENST00000589941 CFAP43Q8NDM7 1665 aa14.22□□□□□ -0.13
SMAD4-209ENST00000589941 VSIG10Q8N0Z9 540 aa14.2□□□□□ -0.14
SMAD4-209ENST00000589941 BCORL1Q5H9F3 1711 aa14.2□□□□□ -0.14
SMAD4-209ENST00000589941 KDM5BQ9UGL1 1544 aa14.2□□□□□ -0.14
SMAD4-209ENST00000589941 RIMS1Q86UR5 1692 aaKnown RBP14.17□□□□□ -0.14
SMAD4-209ENST00000589941 HOXB3P14651 431 aaPredicted RBP14.16□□□□□ -0.14
SMAD4-209ENST00000589941 TNIKQ9UKE5 1360 aa14.15□□□□□ -0.14
SMAD4-209ENST00000589941 WDR70Q9NW82 654 aa14.15□□□□□ -0.14
SMAD4-209ENST00000589941 IQGAP2Q13576 1575 aa14.14□□□□□ -0.15
SMAD4-209ENST00000589941 UACAQ9BZF9 1416 aa14.14□□□□□ -0.15
SMAD4-209ENST00000589941 WDR7Q9Y4E6 1490 aa14.12□□□□□ -0.15
SMAD4-209ENST00000589941 DISP1Q96F81 1524 aa14.12□□□□□ -0.15
SMAD4-209ENST00000589941 MAGI3Q5TCQ9 1506 aa14.11□□□□□ -0.15
SMAD4-209ENST00000589941 CAMK2BQ13554 666 aa14.1□□□□□ -0.15
SMAD4-209ENST00000589941 EMILIN3Q9NT22 766 aa14.09□□□□□ -0.15
SMAD4-209ENST00000589941 FRMPD1Q5SYB0 1578 aa14.09□□□□□ -0.15
SMAD4-209ENST00000589941 SIGLEC1Q9BZZ2 1709 aa14.08□□□□□ -0.16
SMAD4-209ENST00000589941 KIAA0556O60303 1618 aa14.08□□□□□ -0.16
SMAD4-209ENST00000589941 CARMIL2Q6F5E8 1435 aa14.07□□□□□ -0.16
SMAD4-209ENST00000589941 E2F4Q16254 413 aa14.07□□□□□ -0.16
SMAD4-209ENST00000589941 CERKQ8TCT0 537 aa14.07□□□□□ -0.16
SMAD4-209ENST00000589941 SNPHO15079 494 aa14.06□□□□□ -0.16
SMAD4-209ENST00000589941 DOK7Q18PE1 504 aa14.06□□□□□ -0.16
SMAD4-209ENST00000589941 SLC34A2O95436 690 aa14.05□□□□□ -0.16
SMAD4-209ENST00000589941 HSPA2P54652 639 aa14.05□□□□□ -0.16
SMAD4-209ENST00000589941 UPF1Q92900 1129 aaKnown RBP eCLIP14.05□□□□□ -0.16
SMAD4-209ENST00000589941 CD109Q6YHK3 1445 aa14.05□□□□□ -0.16
SMAD4-209ENST00000589941 KCNV2Q8TDN2 545 aa14.04□□□□□ -0.16
SMAD4-209ENST00000589941 OXER1Q8TDS5 423 aa14.03□□□□□ -0.16
SMAD4-209ENST00000589941 ARAP3Q8WWN8 1544 aa14.03□□□□□ -0.16
SMAD4-209ENST00000589941 PTCD2Q8WV60 388 aaKnown RBP14.02□□□□□ -0.17
SMAD4-209ENST00000589941 STRCQ7RTU9 1775 aa14.01□□□□□ -0.17
SMAD4-209ENST00000589941 IGF1RP08069 1367 aa14.01□□□□□ -0.17
SMAD4-209ENST00000589941 KHSRPQ92945 711 aaKnown RBP eCLIP14□□□□□ -0.173e-8■■■■□ 26.1
SMAD4-209ENST00000589941 FAM163AQ96GL9 167 aaPredicted RBP14□□□□□ -0.17
SMAD4-209ENST00000589941 PCDHGA4Q9Y5G9 962 aa14□□□□□ -0.17
SMAD4-209ENST00000589941 ARHGEF40Q8TER5 1519 aa14□□□□□ -0.17
SMAD4-209ENST00000589941 ST18O60284 1047 aa13.99□□□□□ -0.17
SMAD4-209ENST00000589941 LCE2DQ5TA82 110 aaPredicted RBP13.99□□□□□ -0.17
SMAD4-209ENST00000589941 GPR153Q6NV75 609 aa13.99□□□□□ -0.17
SMAD4-209ENST00000589941 ZNF710Q8N1W2 664 aa13.99□□□□□ -0.17
SMAD4-209ENST00000589941 FER1L4A9Z1Z3 1794 aa13.99□□□□□ -0.17
SMAD4-209ENST00000589941 ARSIQ5FYB1 569 aa13.98□□□□□ -0.17
SMAD4-209ENST00000589941 UGGT2Q9NYU1 1516 aa13.98□□□□□ -0.17
SMAD4-209ENST00000589941 DPYSL4O14531 572 aa13.97□□□□□ -0.17
SMAD4-209ENST00000589941 PREX1Q8TCU6 1659 aa13.96□□□□□ -0.17
SMAD4-209ENST00000589941 RIMBP2O15034 1052 aa13.96□□□□□ -0.17
SMAD4-209ENST00000589941 ABCA8O94911 1581 aa13.96□□□□□ -0.18
SMAD4-209ENST00000589941 ZSWIM6Q9HCJ5 1215 aa13.95□□□□□ -0.18
SMAD4-209ENST00000589941 ABCA9Q8IUA7 1624 aa13.94□□□□□ -0.18
SMAD4-209ENST00000589941 RICTORQ6R327 1708 aa13.94□□□□□ -0.18
SMAD4-209ENST00000589941 MAP3K9P80192 1104 aa13.93□□□□□ -0.18
SMAD4-209ENST00000589941 TTC37Q6PGP7 1564 aa13.92□□□□□ -0.18
SMAD4-209ENST00000589941 CTTNBP2Q8WZ74 1663 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms