RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 NUTM2BA6NNL0 878 aaPredicted RBP7□□□□□ -1.29
LIG3-211ENST00000588713 NUTM2EB1AL46 878 aaPredicted RBP7□□□□□ -1.29
LIG3-211ENST00000588713 NUTM2DQ5VT03 806 aaPredicted RBP7□□□□□ -1.29
LIG3-211ENST00000588713 ZNF772Q68DY9 489 aaPredicted RBP7□□□□□ -1.29
LIG3-211ENST00000588713 NUTM2AQ8IVF1 878 aaPredicted RBP7□□□□□ -1.29
LIG3-211ENST00000588713 VWDEQ8N2E2 1590 aa6.99□□□□□ -1.29
LIG3-211ENST00000588713 CNTLNQ9NXG0 1405 aa6.99□□□□□ -1.29
LIG3-211ENST00000588713 GOLGA3Q08378 1498 aa6.98□□□□□ -1.29
LIG3-211ENST00000588713 ZNF142P52746 1687 aaPredicted RBP6.98□□□□□ -1.29
LIG3-211ENST00000588713 FAM9AQ8IZU1 332 aaPredicted RBP6.98□□□□□ -1.29
LIG3-211ENST00000588713 P3H3Q8IVL6 736 aa6.97□□□□□ -1.29
LIG3-211ENST00000588713 NEURL4Q96JN8 1562 aa6.97□□□□□ -1.29
LIG3-211ENST00000588713 ZMYM3Q14202 1370 aa6.96□□□□□ -1.29
LIG3-211ENST00000588713 PRKAR2AP13861 404 aaKnown RBP6.96□□□□□ -1.3
LIG3-211ENST00000588713 SSUH2Q9Y2M2 353 aa6.96□□□□□ -1.3
LIG3-211ENST00000588713 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.96□□□□□ -1.3
LIG3-211ENST00000588713 AGLP35573 1532 aa6.95□□□□□ -1.3
LIG3-211ENST00000588713 DIP2CQ9Y2E4 1556 aa6.95□□□□□ -1.3
LIG3-211ENST00000588713 RAPGEF6Q8TEU7 1601 aa6.94□□□□□ -1.3
LIG3-211ENST00000588713 RGS12O14924 1447 aa6.94□□□□□ -1.3
LIG3-211ENST00000588713 CDK12Q9NYV4 1490 aaPredicted RBP6.94□□□□□ -1.3
LIG3-211ENST00000588713 POLR1AO95602 1720 aaPredicted RBP6.94□□□□□ -1.3
LIG3-211ENST00000588713 AFAP1Q8N556 730 aa6.94□□□□□ -1.3
LIG3-211ENST00000588713 LRP6O75581 1613 aa6.94□□□□□ -1.3
LIG3-211ENST00000588713 JCADQ9P266 1359 aa6.94□□□□□ -1.3
LIG3-211ENST00000588713 FAM135BQ49AJ0 1406 aa6.93□□□□□ -1.3
LIG3-211ENST00000588713 PLEKHD1A6NEE1 506 aa6.93□□□□□ -1.3
LIG3-211ENST00000588713 ANKLE2Q86XL3 938 aa6.93□□□□□ -1.3
LIG3-211ENST00000588713 SYNMO15061 1565 aa6.93□□□□□ -1.3
LIG3-211ENST00000588713 NPHP4O75161 1426 aaPredicted RBP6.93□□□□□ -1.3
LIG3-211ENST00000588713 A2ML1A8K2U0 1454 aa6.92□□□□□ -1.3
LIG3-211ENST00000588713 DNMT1P26358 1616 aaKnown RBP6.92□□□□□ -1.3
LIG3-211ENST00000588713 ABCA6Q8N139 1617 aa6.92□□□□□ -1.3
LIG3-211ENST00000588713 EVX2Q03828 476 aa6.92□□□□□ -1.3
LIG3-211ENST00000588713 ATAD2Q6PL18 1390 aa6.92□□□□□ -1.3
LIG3-211ENST00000588713 STRCP1A6NGW2 1772 aa6.92□□□□□ -1.3
LIG3-211ENST00000588713 ZNF518AQ6AHZ1 1483 aa6.92□□□□□ -1.3
LIG3-211ENST00000588713 REREQ9P2R6 1566 aa6.91□□□□□ -1.3
LIG3-211ENST00000588713 LRP5O75197 1615 aa6.91□□□□□ -1.3
LIG3-211ENST00000588713 ROBO1Q9Y6N7 1651 aa6.91□□□□□ -1.3
LIG3-211ENST00000588713 CSRNP3Q8WYN3 585 aa6.91□□□□□ -1.3
LIG3-211ENST00000588713 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.91□□□□□ -1.3
LIG3-211ENST00000588713 CDK13Q14004 1512 aaKnown RBP6.91□□□□□ -1.3
LIG3-211ENST00000588713 MROH2AA6NES4 1674 aa6.9□□□□□ -1.3
LIG3-211ENST00000588713 PLCH2O75038 1416 aa6.9□□□□□ -1.31
LIG3-211ENST00000588713 PRR29P0C7W0 189 aa6.89□□□□□ -1.31
LIG3-211ENST00000588713 CLTCQ00610 1675 aaKnown RBP6.88□□□□□ -1.31
LIG3-211ENST00000588713 KDM5CP41229 1560 aa6.88□□□□□ -1.31
LIG3-211ENST00000588713 AFF2P51816 1311 aa6.88□□□□□ -1.31
LIG3-211ENST00000588713 EFCAB2Q5VUJ9 269 aa6.88□□□□□ -1.31
LIG3-211ENST00000588713 PHLPP1O60346 1717 aa6.87□□□□□ -1.31
LIG3-211ENST00000588713 ABCC1P33527 1531 aa6.87□□□□□ -1.31
LIG3-211ENST00000588713 NUP153P49790 1475 aaKnown RBP6.87□□□□□ -1.31
LIG3-211ENST00000588713 SPATA31A6Q5VVP1 1343 aa6.87□□□□□ -1.31
LIG3-211ENST00000588713 PSDA5PKW4 1024 aaPredicted RBP6.87□□□□□ -1.31
LIG3-211ENST00000588713 CHADLQ6NUI6 762 aa6.87□□□□□ -1.31
LIG3-211ENST00000588713 IQGAP1P46940 1657 aa6.87□□□□□ -1.31
LIG3-211ENST00000588713 CTTNBP2Q8WZ74 1663 aa6.87□□□□□ -1.31
LIG3-211ENST00000588713 RBM6P78332 1123 aaKnown RBP6.86□□□□□ -1.31
LIG3-211ENST00000588713 ITSN2Q9NZM3 1697 aa6.85□□□□□ -1.31
LIG3-211ENST00000588713 EHMT2Q96KQ7 1210 aa6.85□□□□□ -1.31
LIG3-211ENST00000588713 QTRT2Q9H974 415 aaKnown RBP6.85□□□□□ -1.31
LIG3-211ENST00000588713 MED14O60244 1454 aa6.85□□□□□ -1.31
LIG3-211ENST00000588713 C19orf67A6NJJ6 358 aa6.84□□□□□ -1.31
LIG3-211ENST00000588713 GGT6Q6P531 493 aa6.84□□□□□ -1.31
LIG3-211ENST00000588713 THEMISQ8N1K5 641 aaPredicted RBP6.84□□□□□ -1.31
LIG3-211ENST00000588713 MLH3Q9UHC1 1453 aa6.84□□□□□ -1.31
LIG3-211ENST00000588713 TNRQ92752 1358 aa6.83□□□□□ -1.32
LIG3-211ENST00000588713 ARHGAP5Q13017 1502 aa6.83□□□□□ -1.32
LIG3-211ENST00000588713 C8orf37Q96NL8 207 aa6.83□□□□□ -1.32
LIG3-211ENST00000588713 TMEM94Q12767 1356 aa6.82□□□□□ -1.32
LIG3-211ENST00000588713 FAM135AQ9P2D6 1515 aa6.82□□□□□ -1.32
LIG3-211ENST00000588713 LRRC9Q6ZRR7 1453 aa6.82□□□□□ -1.32
LIG3-211ENST00000588713 HRCP23327 699 aa6.82□□□□□ -1.32
LIG3-211ENST00000588713 C1QTNF8P60827 252 aa6.82□□□□□ -1.32
LIG3-211ENST00000588713 FBXO31Q5XUX0 539 aaPredicted RBP6.82□□□□□ -1.32
LIG3-211ENST00000588713 DEFB132Q7Z7B7 95 aa6.82□□□□□ -1.32
LIG3-211ENST00000588713 XIRP1Q702N8 1843 aaKnown RBP6.82□□□□□ -1.32
LIG3-211ENST00000588713 DEPDC5O75140 1603 aa6.82□□□□□ -1.32
LIG3-211ENST00000588713 COL16A1Q07092 1604 aaPredicted RBP6.82□□□□□ -1.32
LIG3-211ENST00000588713 NHSL1Q5SYE7 1610 aa6.81□□□□□ -1.32
LIG3-211ENST00000588713 CCDC125Q86Z20 511 aa6.81□□□□□ -1.32
LIG3-211ENST00000588713 NGLY1Q96IV0 654 aa6.81□□□□□ -1.32
LIG3-211ENST00000588713 FGD6Q6ZV73 1430 aa6.81□□□□□ -1.32
LIG3-211ENST00000588713 UGGT1Q9NYU2 1555 aa6.81□□□□□ -1.32
LIG3-211ENST00000588713 KDM5DQ9BY66 1539 aa6.81□□□□□ -1.32
LIG3-211ENST00000588713 RANGAP1P46060 587 aaPredicted RBP6.8□□□□□ -1.32
LIG3-211ENST00000588713 ZNF784Q8NCA9 323 aaPredicted RBP6.8□□□□□ -1.32
LIG3-211ENST00000588713 MYO5CQ9NQX4 1742 aa6.79□□□□□ -1.32
LIG3-211ENST00000588713 SLC34A2O95436 690 aa6.79□□□□□ -1.32
LIG3-211ENST00000588713 SLAIN2Q9P270 581 aa6.79□□□□□ -1.32
LIG3-211ENST00000588713 GABBR2O75899 941 aa6.78□□□□□ -1.32
LIG3-211ENST00000588713 PROSER2Q86WR7 435 aaPredicted RBP6.78□□□□□ -1.32
LIG3-211ENST00000588713 NWD1Q149M9 1564 aa6.78□□□□□ -1.32
LIG3-211ENST00000588713 KIDINS220Q9ULH0 1771 aa6.77□□□□□ -1.33
LIG3-211ENST00000588713 MAP3K1Q13233 1512 aa6.77□□□□□ -1.33
LIG3-211ENST00000588713 EP400Q96L91 3159 aa6.77□□□□□ -1.33
LIG3-211ENST00000588713 SF3B2Q13435 895 aaKnown RBP6.77□□□□□ -1.33
LIG3-211ENST00000588713 MSH6P52701 1360 aa6.77□□□□□ -1.33
LIG3-211ENST00000588713 ATP7AQ04656 1500 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms