RNA–Protein interactions for RNA: ENST00000587904.5

LINC01539-201, Transcript of long intergenic non-protein coding RNA 1539, humanhuman

TSL 2 BASIC

Gene LINC01539, Length 2,068 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01539-201ENST00000587904 TRAPPC8Q9Y2L5 1435 aa13.52□□□□□ -0.24
LINC01539-201ENST00000587904 ADGRL1O94910 1474 aa13.51□□□□□ -0.25
LINC01539-201ENST00000587904 PKD2Q13563 968 aa13.51□□□□□ -0.25
LINC01539-201ENST00000587904 FOXD1Q16676 465 aa13.51□□□□□ -0.25
LINC01539-201ENST00000587904 YTHDC1Q96MU7 727 aaKnown RBP13.51□□□□□ -0.25
LINC01539-201ENST00000587904 ATP7AQ04656 1500 aa13.5□□□□□ -0.25
LINC01539-201ENST00000587904 SPAG9O60271 1321 aaKnown RBP13.49□□□□□ -0.25
LINC01539-201ENST00000587904 L3MBTL2Q969R5 705 aa13.48□□□□□ -0.25
LINC01539-201ENST00000587904 EIF2AK4Q9P2K8 1649 aaKnown RBP13.48□□□□□ -0.25
LINC01539-201ENST00000587904 DEPDC5O75140 1603 aa13.47□□□□□ -0.25
LINC01539-201ENST00000587904 SCAPERQ9BY12 1400 aa13.46□□□□□ -0.25
LINC01539-201ENST00000587904 ZNF518AQ6AHZ1 1483 aa13.46□□□□□ -0.25
LINC01539-201ENST00000587904 CD109Q6YHK3 1445 aa13.45□□□□□ -0.26
LINC01539-201ENST00000587904 MIER1Q8N108 512 aa13.45□□□□□ -0.26
LINC01539-201ENST00000587904 ATP10AO60312 1499 aa13.44□□□□□ -0.26
LINC01539-201ENST00000587904 NEO1Q92859 1461 aa13.44□□□□□ -0.26
LINC01539-201ENST00000587904 KDM5CP41229 1560 aa13.44□□□□□ -0.26
LINC01539-201ENST00000587904 GLI2P10070 1586 aa13.43□□□□□ -0.26
LINC01539-201ENST00000587904 UHRF1BP1Q6BDS2 1440 aa13.42□□□□□ -0.26
LINC01539-201ENST00000587904 TRHP20396 242 aaPredicted RBP13.42□□□□□ -0.26
LINC01539-201ENST00000587904 AFAP1Q8N556 730 aa13.42□□□□□ -0.26
LINC01539-201ENST00000587904 POGZQ7Z3K3 1410 aa13.41□□□□□ -0.26
LINC01539-201ENST00000587904 CCDC144AA2RUR9 1427 aa13.41□□□□□ -0.26
LINC01539-201ENST00000587904 KIDINS220Q9ULH0 1771 aa13.4□□□□□ -0.26
LINC01539-201ENST00000587904 PRDM15P57071 1507 aaPredicted RBP13.4□□□□□ -0.26
LINC01539-201ENST00000587904 MAP3K4Q9Y6R4 1608 aa13.4□□□□□ -0.26
LINC01539-201ENST00000587904 VWDEQ8N2E2 1590 aa13.4□□□□□ -0.26
LINC01539-201ENST00000587904 EIF4G2P78344 907 aaKnown RBP eCLIP13.4□□□□□ -0.27
LINC01539-201ENST00000587904 TET3O43151 1660 aa13.39□□□□□ -0.27
LINC01539-201ENST00000587904 HECW2Q9P2P5 1572 aa13.39□□□□□ -0.27
LINC01539-201ENST00000587904 MLH3Q9UHC1 1453 aa13.39□□□□□ -0.27
LINC01539-201ENST00000587904 DHX29Q7Z478 1369 aaKnown RBP13.39□□□□□ -0.27
LINC01539-201ENST00000587904 RALGAPBQ86X10 1494 aa13.38□□□□□ -0.27
LINC01539-201ENST00000587904 KANK1Q14678 1352 aa13.38□□□□□ -0.27
LINC01539-201ENST00000587904 PLA2R1Q13018 1463 aa13.37□□□□□ -0.27
LINC01539-201ENST00000587904 BCORL1Q5H9F3 1711 aa13.37□□□□□ -0.27
LINC01539-201ENST00000587904 NBPF8Q3BBV2 869 aa13.36□□□□□ -0.27
LINC01539-201ENST00000587904 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.36□□□□□ -0.27
LINC01539-201ENST00000587904 RNF17Q9BXT8 1623 aaKnown RBP13.36□□□□□ -0.27
LINC01539-201ENST00000587904 POLR1AO95602 1720 aaPredicted RBP13.36□□□□□ -0.27
LINC01539-201ENST00000587904 HSPA5P11021 654 aaKnown RBP13.36□□□□□ -0.27
LINC01539-201ENST00000587904 E9PCH4 1651 aa13.36□□□□□ -0.27
LINC01539-201ENST00000587904 TRPM2O94759 1503 aa13.36□□□□□ -0.27
LINC01539-201ENST00000587904 MROH1Q8NDA8 1641 aa13.35□□□□□ -0.27
LINC01539-201ENST00000587904 SPATA31E1Q6ZUB1 1445 aa13.35□□□□□ -0.27
LINC01539-201ENST00000587904 RBM19Q9Y4C8 960 aaKnown RBP13.35□□□□□ -0.27
LINC01539-201ENST00000587904 A2MP01023 1474 aa13.34□□□□□ -0.27
LINC01539-201ENST00000587904 SPHKAPQ2M3C7 1700 aa13.34□□□□□ -0.27
LINC01539-201ENST00000587904 DDX10Q13206 875 aaKnown RBP13.33□□□□□ -0.27
LINC01539-201ENST00000587904 SALL2Q9Y467 1007 aaPredicted RBP13.33□□□□□ -0.27
LINC01539-201ENST00000587904 LMTK2Q8IWU2 1503 aa13.33□□□□□ -0.28
LINC01539-201ENST00000587904 DIP2BQ9P265 1576 aa13.33□□□□□ -0.28
LINC01539-201ENST00000587904 PTPRTO14522 1441 aa13.33□□□□□ -0.28
LINC01539-201ENST00000587904 NEURL4Q96JN8 1562 aa13.32□□□□□ -0.28
LINC01539-201ENST00000587904 RICTORQ6R327 1708 aa13.32□□□□□ -0.28
LINC01539-201ENST00000587904 DEKP35659 375 aaKnown RBP13.32□□□□□ -0.28
LINC01539-201ENST00000587904 HIRIP3Q9BW71 556 aaPredicted RBP13.32□□□□□ -0.28
LINC01539-201ENST00000587904 ABCA6Q8N139 1617 aa13.31□□□□□ -0.28
LINC01539-201ENST00000587904 EFCAB6Q5THR3 1501 aa13.31□□□□□ -0.28
LINC01539-201ENST00000587904 CEP152O94986 1710 aa13.31□□□□□ -0.28
LINC01539-201ENST00000587904 FRMPD1Q5SYB0 1578 aa13.31□□□□□ -0.28
LINC01539-201ENST00000587904 LAMC1P11047 1609 aa13.3□□□□□ -0.28
LINC01539-201ENST00000587904 FANCIQ9NVI1 1328 aa13.3□□□□□ -0.28
LINC01539-201ENST00000587904 PRAG1Q86YV5 1406 aa13.29□□□□□ -0.28
LINC01539-201ENST00000587904 TRPM1Q7Z4N2 1603 aa13.29□□□□□ -0.28
LINC01539-201ENST00000587904 KIF3BO15066 747 aa13.29□□□□□ -0.28
LINC01539-201ENST00000587904 USP47Q96K76 1375 aa13.29□□□□□ -0.28
LINC01539-201ENST00000587904 WASHC2AQ641Q2 1341 aa13.28□□□□□ -0.28
LINC01539-201ENST00000587904 ZMYM4Q5VZL5 1548 aa13.28□□□□□ -0.28
LINC01539-201ENST00000587904 DIP2CQ9Y2E4 1556 aa13.28□□□□□ -0.28
LINC01539-201ENST00000587904 CCDC7Q96M83 1385 aa13.28□□□□□ -0.28
LINC01539-201ENST00000587904 CLTCL1P53675 1640 aa13.27□□□□□ -0.29
LINC01539-201ENST00000587904 DCAF11Q8TEB1 546 aa13.27□□□□□ -0.29
LINC01539-201ENST00000587904 PKNOX2Q96KN3 472 aa13.27□□□□□ -0.29
LINC01539-201ENST00000587904 PPRC1Q5VV67 1664 aaKnown RBP13.26□□□□□ -0.29
LINC01539-201ENST00000587904 ARID4BQ4LE39 1312 aaPredicted RBP13.26□□□□□ -0.29
LINC01539-201ENST00000587904 CNTLNQ9NXG0 1405 aa13.26□□□□□ -0.29
LINC01539-201ENST00000587904 MSH5O43196 834 aa13.26□□□□□ -0.29
LINC01539-201ENST00000587904 ANP32CO43423 234 aa13.26□□□□□ -0.29
LINC01539-201ENST00000587904 STAC3Q96MF2 364 aa13.26□□□□□ -0.29
LINC01539-201ENST00000587904 ZNF326Q5BKZ1 582 aaKnown RBP13.25□□□□□ -0.29
LINC01539-201ENST00000587904 GPRASP1Q5JY77 1395 aa13.25□□□□□ -0.29
LINC01539-201ENST00000587904 CCER2I3L3R5 266 aa13.25□□□□□ -0.29
LINC01539-201ENST00000587904 PLPPR3Q6T4P5 718 aa13.24□□□□□ -0.29
LINC01539-201ENST00000587904 ZC3H13Q5T200 1668 aaKnown RBP13.24□□□□□ -0.29
LINC01539-201ENST00000587904 ROCK2O75116 1388 aaKnown RBP13.23□□□□□ -0.29
LINC01539-201ENST00000587904 CARD11Q9BXL7 1154 aa13.23□□□□□ -0.29
LINC01539-201ENST00000587904 MADDQ8WXG6 1647 aa13.21□□□□□ -0.29
LINC01539-201ENST00000587904 ABCC3O15438 1527 aa13.21□□□□□ -0.29
LINC01539-201ENST00000587904 FAM69CQ0P6D2 419 aa13.21□□□□□ -0.29
LINC01539-201ENST00000587904 KDM2AQ9Y2K7 1162 aa13.21□□□□□ -0.29
LINC01539-201ENST00000587904 REREQ9P2R6 1566 aa13.21□□□□□ -0.3
LINC01539-201ENST00000587904 KIF7Q2M1P5 1343 aa13.2□□□□□ -0.3
LINC01539-201ENST00000587904 KIF1BO60333 1816 aa13.2□□□□□ -0.3
LINC01539-201ENST00000587904 CAMSAP1Q5T5Y3 1602 aa13.2□□□□□ -0.3
LINC01539-201ENST00000587904 RAPGEF3O95398 923 aa13.19□□□□□ -0.3
LINC01539-201ENST00000587904 RGL3Q3MIN7 710 aa13.19□□□□□ -0.3
LINC01539-201ENST00000587904 KIAA1210Q9ULL0 1709 aa13.19□□□□□ -0.3
LINC01539-201ENST00000587904 MYOM2P54296 1465 aa13.18□□□□□ -0.3
LINC01539-201ENST00000587904 C11orf95C9JLR9 678 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms