RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 EIF4G2P78344 907 aaKnown RBP eCLIP15.88■□□□□ 0.13
LIG3-204ENST00000585740 SPAG9O60271 1321 aaKnown RBP15.88■□□□□ 0.13
LIG3-204ENST00000585740 ZFYVE16Q7Z3T8 1539 aa15.88■□□□□ 0.13
LIG3-204ENST00000585740 INO80Q9ULG1 1556 aaPredicted RBP15.86■□□□□ 0.13
LIG3-204ENST00000585740 PTPRMP28827 1452 aa15.85■□□□□ 0.13
LIG3-204ENST00000585740 DDX10Q13206 875 aaKnown RBP15.85■□□□□ 0.13
LIG3-204ENST00000585740 POLR1AO95602 1720 aaPredicted RBP15.85■□□□□ 0.13
LIG3-204ENST00000585740 UHRF1BP1Q6BDS2 1440 aa15.85■□□□□ 0.13
LIG3-204ENST00000585740 ATP7AQ04656 1500 aa15.84■□□□□ 0.13
LIG3-204ENST00000585740 EIF2AK4Q9P2K8 1649 aaKnown RBP15.83■□□□□ 0.13
LIG3-204ENST00000585740 HSPA5P11021 654 aaKnown RBP15.83■□□□□ 0.12
LIG3-204ENST00000585740 DEPDC5O75140 1603 aa15.82■□□□□ 0.12
LIG3-204ENST00000585740 ATP10AO60312 1499 aa15.81■□□□□ 0.12
LIG3-204ENST00000585740 NBPF8Q3BBV2 869 aa15.81■□□□□ 0.12
LIG3-204ENST00000585740 SCAPERQ9BY12 1400 aa15.81■□□□□ 0.12
LIG3-204ENST00000585740 LMTK3Q96Q04 1460 aa15.8■□□□□ 0.12
LIG3-204ENST00000585740 CCDC144AA2RUR9 1427 aa15.79■□□□□ 0.12
LIG3-204ENST00000585740 HIRIP3Q9BW71 556 aaPredicted RBP15.79■□□□□ 0.12
LIG3-204ENST00000585740 ADAMTSL3P82987 1691 aa15.79■□□□□ 0.12
LIG3-204ENST00000585740 RALGAPBQ86X10 1494 aa15.78■□□□□ 0.12
LIG3-204ENST00000585740 ANP32CO43423 234 aa15.78■□□□□ 0.12
LIG3-204ENST00000585740 ZNF518AQ6AHZ1 1483 aa15.78■□□□□ 0.12
LIG3-204ENST00000585740 AFAP1Q8N556 730 aa15.77■□□□□ 0.12
LIG3-204ENST00000585740 YTHDC1Q96MU7 727 aaKnown RBP15.77■□□□□ 0.12
LIG3-204ENST00000585740 SPATA31E1Q6ZUB1 1445 aa15.77■□□□□ 0.11
LIG3-204ENST00000585740 KANK1Q14678 1352 aa15.76■□□□□ 0.11
LIG3-204ENST00000585740 CCER2I3L3R5 266 aa15.76■□□□□ 0.11
LIG3-204ENST00000585740 RAPGEF3O95398 923 aa15.76■□□□□ 0.11
LIG3-204ENST00000585740 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.76■□□□□ 0.11
LIG3-204ENST00000585740 TET3O43151 1660 aa15.76■□□□□ 0.11
LIG3-204ENST00000585740 ARID4BQ4LE39 1312 aaPredicted RBP15.75■□□□□ 0.11
LIG3-204ENST00000585740 NEO1Q92859 1461 aa15.75■□□□□ 0.11
LIG3-204ENST00000585740 KIDINS220Q9ULH0 1771 aa15.75■□□□□ 0.11
LIG3-204ENST00000585740 DHX29Q7Z478 1369 aaKnown RBP15.75■□□□□ 0.11
LIG3-204ENST00000585740 KDM5CP41229 1560 aa15.74■□□□□ 0.11
LIG3-204ENST00000585740 VWDEQ8N2E2 1590 aa15.74■□□□□ 0.11
LIG3-204ENST00000585740 PLA2R1Q13018 1463 aa15.73■□□□□ 0.11
LIG3-204ENST00000585740 E9PCH4 1651 aa15.73■□□□□ 0.11
LIG3-204ENST00000585740 SPHKAPQ2M3C7 1700 aa15.72■□□□□ 0.11
LIG3-204ENST00000585740 SENP3Q9H4L4 574 aaPredicted RBP15.72■□□□□ 0.11
LIG3-204ENST00000585740 PRDM15P57071 1507 aaPredicted RBP15.72■□□□□ 0.11
LIG3-204ENST00000585740 CCDC7Q96M83 1385 aa15.72■□□□□ 0.11
LIG3-204ENST00000585740 MADDQ8WXG6 1647 aa15.72■□□□□ 0.11
LIG3-204ENST00000585740 WASHC2AQ641Q2 1341 aa15.71■□□□□ 0.11
LIG3-204ENST00000585740 POGZQ7Z3K3 1410 aa15.71■□□□□ 0.11
LIG3-204ENST00000585740 HSPA2P54652 639 aa15.71■□□□□ 0.11
LIG3-204ENST00000585740 MYT1LQ9UL68 1186 aa15.71■□□□□ 0.11
LIG3-204ENST00000585740 MLH3Q9UHC1 1453 aa15.71■□□□□ 0.1
LIG3-204ENST00000585740 CNTLNQ9NXG0 1405 aa15.7■□□□□ 0.1
LIG3-204ENST00000585740 TRPM2O94759 1503 aa15.7■□□□□ 0.1
LIG3-204ENST00000585740 LAMC1P11047 1609 aa15.7■□□□□ 0.1
LIG3-204ENST00000585740 CEP152O94986 1710 aa15.7■□□□□ 0.1
LIG3-204ENST00000585740 BCORL1Q5H9F3 1711 aa15.7■□□□□ 0.1
LIG3-204ENST00000585740 USP47Q96K76 1375 aa15.7■□□□□ 0.1
LIG3-204ENST00000585740 RNF17Q9BXT8 1623 aaKnown RBP15.69■□□□□ 0.1
LIG3-204ENST00000585740 SCAF1Q9H7N4 1312 aaKnown RBP15.68■□□□□ 0.1
LIG3-204ENST00000585740 TRPM1Q7Z4N2 1603 aa15.68■□□□□ 0.1
LIG3-204ENST00000585740 PLPPR3Q6T4P5 718 aa15.68■□□□□ 0.1
LIG3-204ENST00000585740 CERKQ8TCT0 537 aa15.68■□□□□ 0.1
LIG3-204ENST00000585740 DCAF11Q8TEB1 546 aa15.68■□□□□ 0.1
LIG3-204ENST00000585740 PTPRTO14522 1441 aa15.68■□□□□ 0.1
LIG3-204ENST00000585740 NEURL4Q96JN8 1562 aa15.67■□□□□ 0.1
LIG3-204ENST00000585740 A2MP01023 1474 aa15.67■□□□□ 0.1
LIG3-204ENST00000585740 ZNF326Q5BKZ1 582 aaKnown RBP15.67■□□□□ 0.1
LIG3-204ENST00000585740 STAC3Q96MF2 364 aa15.67■□□□□ 0.1
LIG3-204ENST00000585740 MROH1Q8NDA8 1641 aa15.67■□□□□ 0.1
LIG3-204ENST00000585740 LMTK2Q8IWU2 1503 aa15.67■□□□□ 0.1
LIG3-204ENST00000585740 PRAG1Q86YV5 1406 aa15.67■□□□□ 0.1
LIG3-204ENST00000585740 ILDR2Q71H61 639 aa15.66■□□□□ 0.1
LIG3-204ENST00000585740 KIF3BO15066 747 aa15.65■□□□□ 0.1
LIG3-204ENST00000585740 DISP3Q9P2K9 1392 aa15.64■□□□□ 0.09
LIG3-204ENST00000585740 CARD11Q9BXL7 1154 aa15.64■□□□□ 0.09
LIG3-204ENST00000585740 FRMPD1Q5SYB0 1578 aa15.63■□□□□ 0.09
LIG3-204ENST00000585740 SOCS7O14512 581 aa15.63■□□□□ 0.09
LIG3-204ENST00000585740 KDM2AQ9Y2K7 1162 aa15.63■□□□□ 0.09
LIG3-204ENST00000585740 RIMS1Q86UR5 1692 aaKnown RBP15.63■□□□□ 0.09
LIG3-204ENST00000585740 KIF7Q2M1P5 1343 aa15.63■□□□□ 0.09
LIG3-204ENST00000585740 EFCAB6Q5THR3 1501 aa15.63■□□□□ 0.09
LIG3-204ENST00000585740 ROCK2O75116 1388 aaKnown RBP15.62■□□□□ 0.09
LIG3-204ENST00000585740 GPRASP1Q5JY77 1395 aa15.62■□□□□ 0.09
LIG3-204ENST00000585740 CLTCL1P53675 1640 aa15.61■□□□□ 0.09
LIG3-204ENST00000585740 RICTORQ6R327 1708 aa15.61■□□□□ 0.09
LIG3-204ENST00000585740 KIF1BO60333 1816 aa15.61■□□□□ 0.09
LIG3-204ENST00000585740 ABCA6Q8N139 1617 aa15.61■□□□□ 0.09
LIG3-204ENST00000585740 C11orf95C9JLR9 678 aaPredicted RBP15.6■□□□□ 0.09
LIG3-204ENST00000585740 GTF3C3Q9Y5Q9 886 aa15.59■□□□□ 0.09
LIG3-204ENST00000585740 RGL3Q3MIN7 710 aa15.58■□□□□ 0.08
LIG3-204ENST00000585740 ARHGEF40Q8TER5 1519 aa15.58■□□□□ 0.08
LIG3-204ENST00000585740 KIAA1210Q9ULL0 1709 aa15.57■□□□□ 0.08
LIG3-204ENST00000585740 DIP2CQ9Y2E4 1556 aa15.56■□□□□ 0.08
LIG3-204ENST00000585740 MLECQ14165 292 aa15.55■□□□□ 0.08
LIG3-204ENST00000585740 ZC3H13Q5T200 1668 aaKnown RBP15.54■□□□□ 0.08
LIG3-204ENST00000585740 ZMYM4Q5VZL5 1548 aa15.53■□□□□ 0.08
LIG3-204ENST00000585740 PHF23Q9BUL5 403 aaPredicted RBP15.53■□□□□ 0.08
LIG3-204ENST00000585740 ST20-MTHFSA0A0A6YYL1 179 aa15.52■□□□□ 0.08
LIG3-204ENST00000585740 MYOM2P54296 1465 aa15.52■□□□□ 0.07
LIG3-204ENST00000585740 IFT172Q9UG01 1749 aa15.51■□□□□ 0.07
LIG3-204ENST00000585740 PRKRIP1Q9H875 184 aaPredicted RBP15.51■□□□□ 0.07
LIG3-204ENST00000585740 ABCC3O15438 1527 aa15.51■□□□□ 0.07
LIG3-204ENST00000585740 YEATS2Q9ULM3 1422 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms