RNA–Protein interactions for RNA: ENST00000578917.1

TRAF4-213, Transcript of TNF receptor associated factor 4, humanhuman

TSL 4

Gene TRAF4, Length 484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-213ENST00000578917 NCOA1Q15788 1441 aa9.91□□□□□ -0.82
TRAF4-213ENST00000578917 PLXNC1O60486 1568 aa9.91□□□□□ -0.82
TRAF4-213ENST00000578917 DUOX2Q9NRD8 1548 aa9.91□□□□□ -0.82
TRAF4-213ENST00000578917 SHANK2Q9UPX8 1470 aa9.91□□□□□ -0.82
TRAF4-213ENST00000578917 NPATQ14207 1427 aa9.9□□□□□ -0.82
TRAF4-213ENST00000578917 MAST1Q9Y2H9 1570 aa9.89□□□□□ -0.83
TRAF4-213ENST00000578917 THEMISQ8N1K5 641 aaPredicted RBP9.89□□□□□ -0.83
TRAF4-213ENST00000578917 STAG3Q9UJ98 1225 aa9.89□□□□□ -0.83
TRAF4-213ENST00000578917 PTPRKQ15262 1439 aa9.89□□□□□ -0.83
TRAF4-213ENST00000578917 TNRQ92752 1358 aa9.88□□□□□ -0.83
TRAF4-213ENST00000578917 ERBINQ96RT1 1412 aa9.88□□□□□ -0.83
TRAF4-213ENST00000578917 ANKRD50Q9ULJ7 1429 aa9.87□□□□□ -0.83
TRAF4-213ENST00000578917 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.87□□□□□ -0.83
TRAF4-213ENST00000578917 KDM5DQ9BY66 1539 aa9.87□□□□□ -0.83
TRAF4-213ENST00000578917 NCKAP5LQ9HCH0 1330 aa9.86□□□□□ -0.83
TRAF4-213ENST00000578917 DNMT1P26358 1616 aaKnown RBP9.86□□□□□ -0.83
TRAF4-213ENST00000578917 CLTCQ00610 1675 aaKnown RBP9.86□□□□□ -0.83
TRAF4-213ENST00000578917 PKD2Q13563 968 aa9.85□□□□□ -0.83
TRAF4-213ENST00000578917 ANKLE2Q86XL3 938 aa9.85□□□□□ -0.83
TRAF4-213ENST00000578917 ROCK1Q13464 1354 aa9.85□□□□□ -0.83
TRAF4-213ENST00000578917 SETD1BQ9UPS6 1966 aaKnown RBP9.84□□□□□ -0.83
TRAF4-213ENST00000578917 C3P01024 1663 aa9.84□□□□□ -0.83
TRAF4-213ENST00000578917 TRIM52Q96A61 297 aa9.84□□□□□ -0.83
TRAF4-213ENST00000578917 PZPP20742 1482 aa9.84□□□□□ -0.83
TRAF4-213ENST00000578917 NUP155O75694 1391 aa9.83□□□□□ -0.84
TRAF4-213ENST00000578917 ADGRL2O95490 1459 aa9.83□□□□□ -0.84
TRAF4-213ENST00000578917 ABCC3O15438 1527 aa9.82□□□□□ -0.84
TRAF4-213ENST00000578917 CHGAP10645 457 aaKnown RBP9.82□□□□□ -0.84
TRAF4-213ENST00000578917 EID1Q9Y6B2 187 aa9.82□□□□□ -0.84
TRAF4-213ENST00000578917 MROH2AA6NES4 1674 aa9.82□□□□□ -0.84
TRAF4-213ENST00000578917 PREX1Q8TCU6 1659 aa9.82□□□□□ -0.84
TRAF4-213ENST00000578917 FAM135AQ9P2D6 1515 aa9.82□□□□□ -0.84
TRAF4-213ENST00000578917 RRBP1Q9P2E9 1410 aaKnown RBP9.82□□□□□ -0.84
TRAF4-213ENST00000578917 BCANQ96GW7 911 aa9.81□□□□□ -0.84
TRAF4-213ENST00000578917 EIF2AK4Q9P2K8 1649 aaKnown RBP9.81□□□□□ -0.84
TRAF4-213ENST00000578917 A2ML1A8K2U0 1454 aa9.8□□□□□ -0.84
TRAF4-213ENST00000578917 IDI1Q13907 227 aa9.8□□□□□ -0.84
TRAF4-213ENST00000578917 CERKQ8TCT0 537 aa9.8□□□□□ -0.84
TRAF4-213ENST00000578917 SLC52A1Q9NWF4 448 aa9.8□□□□□ -0.84
TRAF4-213ENST00000578917 NLRP1Q9C000 1473 aa9.79□□□□□ -0.84
TRAF4-213ENST00000578917 TXNDC2Q86VQ3 553 aa9.79□□□□□ -0.84
TRAF4-213ENST00000578917 CROCC2H7BZ55 1655 aa9.79□□□□□ -0.84
TRAF4-213ENST00000578917 ARHGAP31Q2M1Z3 1444 aa9.79□□□□□ -0.84
TRAF4-213ENST00000578917 CAMSAP1Q5T5Y3 1602 aa9.78□□□□□ -0.84
TRAF4-213ENST00000578917 RNF17Q9BXT8 1623 aaKnown RBP9.78□□□□□ -0.84
TRAF4-213ENST00000578917 HDGFP51858 240 aaKnown RBP9.78□□□□□ -0.84
TRAF4-213ENST00000578917 PTPRTO14522 1441 aa9.78□□□□□ -0.84
TRAF4-213ENST00000578917 ERVK-7P63135 1459 aa9.78□□□□□ -0.84
TRAF4-213ENST00000578917 CEP170BQ9Y4F5 1589 aaPredicted RBP9.77□□□□□ -0.85
TRAF4-213ENST00000578917 PPP1R15AO75807 674 aaPredicted RBP9.77□□□□□ -0.85
TRAF4-213ENST00000578917 SLC4A1APQ9BWU0 796 aaKnown RBP9.77□□□□□ -0.85
TRAF4-213ENST00000578917 PRDM15P57071 1507 aaPredicted RBP9.77□□□□□ -0.85
TRAF4-213ENST00000578917 UGGT1Q9NYU2 1555 aa9.76□□□□□ -0.85
TRAF4-213ENST00000578917 FBXO41Q8TF61 875 aa9.76□□□□□ -0.85
TRAF4-213ENST00000578917 SENP3Q9H4L4 574 aaPredicted RBP9.76□□□□□ -0.85
TRAF4-213ENST00000578917 MROH1Q8NDA8 1641 aa9.75□□□□□ -0.85
TRAF4-213ENST00000578917 ZNF335Q9H4Z2 1342 aaPredicted RBP9.75□□□□□ -0.85
TRAF4-213ENST00000578917 MYO3AQ8NEV4 1616 aa9.74□□□□□ -0.85
TRAF4-213ENST00000578917 ZC3H13Q5T200 1668 aaKnown RBP9.74□□□□□ -0.85
TRAF4-213ENST00000578917 PLA2R1Q13018 1463 aa9.74□□□□□ -0.85
TRAF4-213ENST00000578917 LTKP29376 864 aa9.74□□□□□ -0.85
TRAF4-213ENST00000578917 ZNF326Q5BKZ1 582 aaKnown RBP9.74□□□□□ -0.85
TRAF4-213ENST00000578917 NAIPQ13075 1403 aa9.73□□□□□ -0.85
TRAF4-213ENST00000578917 LMTK2Q8IWU2 1503 aa9.73□□□□□ -0.85
TRAF4-213ENST00000578917 SPATA31D1Q6ZQQ2 1576 aa9.72□□□□□ -0.85
TRAF4-213ENST00000578917 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.72□□□□□ -0.85
TRAF4-213ENST00000578917 CEP152O94986 1710 aa9.72□□□□□ -0.85
TRAF4-213ENST00000578917 ACIN1Q9UKV3 1341 aaKnown RBP9.72□□□□□ -0.85
TRAF4-213ENST00000578917 TMEM2Q9UHN6 1383 aa9.72□□□□□ -0.85
TRAF4-213ENST00000578917 HFM1A2PYH4 1435 aa9.72□□□□□ -0.85
TRAF4-213ENST00000578917 NPHP4O75161 1426 aaPredicted RBP9.72□□□□□ -0.85
TRAF4-213ENST00000578917 RPRD2Q5VT52 1461 aaKnown RBP9.72□□□□□ -0.85
TRAF4-213ENST00000578917 NUTM2DQ5VT03 806 aaPredicted RBP9.71□□□□□ -0.86
TRAF4-213ENST00000578917 SLC26A8Q96RN1 970 aa9.71□□□□□ -0.86
TRAF4-213ENST00000578917 NOS1P29475 1434 aa9.71□□□□□ -0.86
TRAF4-213ENST00000578917 VWDEQ8N2E2 1590 aa9.71□□□□□ -0.86
TRAF4-213ENST00000578917 DEPDC5O75140 1603 aa9.71□□□□□ -0.86
TRAF4-213ENST00000578917 CFAP65Q6ZU64 1925 aaKnown RBP9.7□□□□□ -0.86
TRAF4-213ENST00000578917 UBAP1LF5GYI3 381 aa9.7□□□□□ -0.86
TRAF4-213ENST00000578917 EFCAB6Q5THR3 1501 aa9.7□□□□□ -0.86
TRAF4-213ENST00000578917 STRCQ7RTU9 1775 aa9.7□□□□□ -0.86
TRAF4-213ENST00000578917 FOXD1Q16676 465 aa9.69□□□□□ -0.86
TRAF4-213ENST00000578917 MPHOSPH9Q99550 1183 aa9.69□□□□□ -0.86
TRAF4-213ENST00000578917 SCAF1Q9H7N4 1312 aaKnown RBP9.69□□□□□ -0.86
TRAF4-213ENST00000578917 ZNF142P52746 1687 aaPredicted RBP9.68□□□□□ -0.86
TRAF4-213ENST00000578917 SCAF11Q99590 1463 aaKnown RBP9.68□□□□□ -0.86
TRAF4-213ENST00000578917 SETD5Q9C0A6 1442 aa9.67□□□□□ -0.86
TRAF4-213ENST00000578917 UNC13BO14795 1591 aa9.67□□□□□ -0.86
TRAF4-213ENST00000578917 RIMS2Q9UQ26 1411 aa9.66□□□□□ -0.86
TRAF4-213ENST00000578917 TOM1O60784 492 aa9.66□□□□□ -0.86
TRAF4-213ENST00000578917 PIP4K2BP78356 416 aa9.66□□□□□ -0.86
TRAF4-213ENST00000578917 PROSER2Q86WR7 435 aaPredicted RBP9.66□□□□□ -0.86
TRAF4-213ENST00000578917 MED14O60244 1454 aa9.66□□□□□ -0.86
TRAF4-213ENST00000578917 TET3O43151 1660 aa9.65□□□□□ -0.86
TRAF4-213ENST00000578917 RGL3Q3MIN7 710 aa9.65□□□□□ -0.86
TRAF4-213ENST00000578917 PIK3C2BO00750 1634 aa9.64□□□□□ -0.87
TRAF4-213ENST00000578917 SYNMO15061 1565 aa9.64□□□□□ -0.87
TRAF4-213ENST00000578917 KCNA6P17658 529 aa9.64□□□□□ -0.87
TRAF4-213ENST00000578917 C14orf37Q86TY3 774 aa9.64□□□□□ -0.87
TRAF4-213ENST00000578917 ARHGAP23Q9P227 1491 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms