RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 PTPREP23469 700 aa10.07□□□□□ -0.8
NUP88-202ENST00000570937 AXIN2Q9Y2T1 843 aa10.06□□□□□ -0.8
NUP88-202ENST00000570937 PRIM1P49642 420 aaKnown RBP10.05□□□□□ -0.8
NUP88-202ENST00000570937 KCNH8Q96L42 1107 aa10.05□□□□□ -0.8
NUP88-202ENST00000570937 PSEN2P49810 448 aa10.04□□□□□ -0.8
NUP88-202ENST00000570937 LSM11P83369 360 aaKnown RBP eCLIP10.04□□□□□ -0.8
NUP88-202ENST00000570937 C6orf132Q5T0Z8 1188 aa10.04□□□□□ -0.8
NUP88-202ENST00000570937 KCNK17Q96T54 332 aa10.04□□□□□ -0.8
NUP88-202ENST00000570937 SMYD5Q6GMV2 418 aa10.03□□□□□ -0.8
NUP88-202ENST00000570937 MAP3K7O43318 606 aa10.02□□□□□ -0.81
NUP88-202ENST00000570937 DMRTA1Q5VZB9 504 aa10.02□□□□□ -0.81
NUP88-202ENST00000570937 RBM33Q96EV2 1170 aaKnown RBP10.02□□□□□ -0.81
NUP88-202ENST00000570937 SLC4A5Q9BY07 1137 aa10.02□□□□□ -0.81
NUP88-202ENST00000570937 PPP1R3GB7ZBB8 358 aa10.01□□□□□ -0.81
NUP88-202ENST00000570937 TK2O00142 265 aa10□□□□□ -0.81
NUP88-202ENST00000570937 TSR1Q2NL82 804 aaKnown RBP10□□□□□ -0.81
NUP88-202ENST00000570937 COL9A1P20849 921 aa9.99□□□□□ -0.81
NUP88-202ENST00000570937 ANKRD13DQ6ZTN6 518 aa9.98□□□□□ -0.81
NUP88-202ENST00000570937 CERKQ8TCT0 537 aa9.98□□□□□ -0.81
NUP88-202ENST00000570937 ZBED2Q9BTP6 218 aa9.98□□□□□ -0.81
NUP88-202ENST00000570937 ADGRD1Q6QNK2 874 aa9.96□□□□□ -0.82
NUP88-202ENST00000570937 CDHR5Q9HBB8 845 aa9.95□□□□□ -0.82
NUP88-202ENST00000570937 VPS9D1Q9Y2B5 631 aa9.95□□□□□ -0.82
NUP88-202ENST00000570937 ONECUT3O60422 494 aaPredicted RBP9.94□□□□□ -0.82
NUP88-202ENST00000570937 NPDC1Q9NQX5 325 aaPredicted RBP9.94□□□□□ -0.82
NUP88-202ENST00000570937 TULP1O00294 542 aaPredicted RBP9.93□□□□□ -0.82
NUP88-202ENST00000570937 HRO43593 1189 aa9.93□□□□□ -0.82
NUP88-202ENST00000570937 RBM26Q5T8P6 1007 aaKnown RBP9.93□□□□□ -0.82
NUP88-202ENST00000570937 PTGDRQ13258 359 aa9.91□□□□□ -0.82
NUP88-202ENST00000570937 RBM27Q9P2N5 1060 aaKnown RBP9.91□□□□□ -0.82
NUP88-202ENST00000570937 TRIM6-TRIM34B2RNG4 842 aa9.9□□□□□ -0.82
NUP88-202ENST00000570937 BHMG1C9JSJ3 638 aaPredicted RBP9.9□□□□□ -0.82
NUP88-202ENST00000570937 PRSS12P56730 875 aa9.9□□□□□ -0.82
NUP88-202ENST00000570937 PROX2Q3B8N5 592 aa9.9□□□□□ -0.82
NUP88-202ENST00000570937 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.9□□□□□ -0.82
NUP88-202ENST00000570937 RABGEF1Q9UJ41 708 aa9.9□□□□□ -0.82
NUP88-202ENST00000570937 NUTM2FA1L443 756 aa9.89□□□□□ -0.83
NUP88-202ENST00000570937 CDCA7LQ96GN5 454 aa9.89□□□□□ -0.83
NUP88-202ENST00000570937 TTC13Q8NBP0 860 aa9.88□□□□□ -0.83
NUP88-202ENST00000570937 BCANQ96GW7 911 aa9.88□□□□□ -0.83
NUP88-202ENST00000570937 MYT1LQ9UL68 1186 aa9.88□□□□□ -0.83
NUP88-202ENST00000570937 FCHSD2O94868 740 aa9.87□□□□□ -0.83
NUP88-202ENST00000570937 TSKSQ9UJT2 592 aa9.87□□□□□ -0.83
NUP88-202ENST00000570937 GPR37O15354 613 aa9.86□□□□□ -0.83
NUP88-202ENST00000570937 RNF166Q96A37 237 aaPredicted RBP9.86□□□□□ -0.83
NUP88-202ENST00000570937 NBPF3Q9H094 633 aa9.85□□□□□ -0.83
NUP88-202ENST00000570937 KIAA1468Q9P260 1216 aa9.85□□□□□ -0.83
NUP88-202ENST00000570937 HIC1Q14526 733 aa9.84□□□□□ -0.83
NUP88-202ENST00000570937 LMOD2Q6P5Q4 547 aa9.84□□□□□ -0.83
NUP88-202ENST00000570937 PACS2Q86VP3 889 aa9.84□□□□□ -0.83
NUP88-202ENST00000570937 GPIHBP1Q8IV16 184 aa9.84□□□□□ -0.83
NUP88-202ENST00000570937 FAM198AQ9UFP1 575 aa9.84□□□□□ -0.83
NUP88-202ENST00000570937 PADI6Q6TGC4 694 aa9.83□□□□□ -0.84
NUP88-202ENST00000570937 LAPTM4BQ86VI4 370 aa9.82□□□□□ -0.84
NUP88-202ENST00000570937 MRPL50Q8N5N7 158 aaKnown RBP9.81□□□□□ -0.84
NUP88-202ENST00000570937 STAC3Q96MF2 364 aa9.81□□□□□ -0.84
NUP88-202ENST00000570937 GNPATO15228 680 aa9.8□□□□□ -0.84
NUP88-202ENST00000570937 NBPF26B4DH59 902 aa9.79□□□□□ -0.84
NUP88-202ENST00000570937 TATDN2Q93075 761 aa9.78□□□□□ -0.84
NUP88-202ENST00000570937 C3orf80F5H4A9 247 aa9.77□□□□□ -0.85
NUP88-202ENST00000570937 FAM98CQ17RN3 349 aaKnown RBP9.77□□□□□ -0.85
NUP88-202ENST00000570937 NUDT18Q6ZVK8 323 aa9.76□□□□□ -0.85
NUP88-202ENST00000570937 SEPT9Q9UHD8 586 aaPredicted RBP9.76□□□□□ -0.85
NUP88-202ENST00000570937 PNMA3Q9UL41 463 aa9.76□□□□□ -0.85
NUP88-202ENST00000570937 FECHP22830 423 aa9.75□□□□□ -0.85
NUP88-202ENST00000570937 EYA1Q99502 592 aa9.75□□□□□ -0.85
NUP88-202ENST00000570937 ADGRG1Q9Y653 693 aa9.75□□□□□ -0.85
NUP88-202ENST00000570937 ZFRQ96KR1 1074 aaKnown RBP9.74□□□□□ -0.85
NUP88-202ENST00000570937 GOLGA8CPA6NN73 597 aa9.73□□□□□ -0.85
NUP88-202ENST00000570937 SMAPO00193 183 aa9.73□□□□□ -0.85
NUP88-202ENST00000570937 ZC3H15Q8WU90 426 aaKnown RBP9.72□□□□□ -0.85
NUP88-202ENST00000570937 ZMYND10O75800 440 aa9.71□□□□□ -0.86
NUP88-202ENST00000570937 MAP2K5Q13163 448 aa9.71□□□□□ -0.86
NUP88-202ENST00000570937 RBM46Q8TBY0 533 aaKnown RBP9.71□□□□□ -0.86
NUP88-202ENST00000570937 WNT2BQ93097 391 aa9.71□□□□□ -0.86
NUP88-202ENST00000570937 KCTD12Q96CX2 325 aaKnown RBP9.71□□□□□ -0.86
NUP88-202ENST00000570937 OATP04181 439 aa9.7□□□□□ -0.86
NUP88-202ENST00000570937 ANKK1Q8NFD2 765 aa9.7□□□□□ -0.86
NUP88-202ENST00000570937 PXYLP1Q8TE99 480 aa9.7□□□□□ -0.86
NUP88-202ENST00000570937 FAM161AQ3B820 660 aa9.69□□□□□ -0.86
NUP88-202ENST00000570937 THSD4Q6ZMP0 1018 aa9.69□□□□□ -0.86
NUP88-202ENST00000570937 BARGINQ6ZT62 677 aa9.69□□□□□ -0.86
NUP88-202ENST00000570937 MINK1Q8N4C8 1332 aaPredicted RBP9.69□□□□□ -0.86
NUP88-202ENST00000570937 SOWAHBA6NEL2 793 aa9.68□□□□□ -0.86
NUP88-202ENST00000570937 METTL3Q86U44 580 aaKnown RBP9.68□□□□□ -0.86
NUP88-202ENST00000570937 IRF6O14896 467 aa9.67□□□□□ -0.86
NUP88-202ENST00000570937 DNAJB2P25686 324 aa9.66□□□□□ -0.86
NUP88-202ENST00000570937 LRCH3Q96II8 777 aa9.66□□□□□ -0.86
NUP88-202ENST00000570937 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.65□□□□□ -0.86
NUP88-202ENST00000570937 RCCD1A6NED2 376 aa9.65□□□□□ -0.86
NUP88-202ENST00000570937 SAMD7Q7Z3H4 446 aa9.65□□□□□ -0.86
NUP88-202ENST00000570937 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.65□□□□□ -0.86
NUP88-202ENST00000570937 HCSTQ9UBK5 93 aa9.65□□□□□ -0.86
NUP88-202ENST00000570937 TMEM134Q9H6X4 195 aa9.64□□□□□ -0.87
NUP88-202ENST00000570937 BCAMP50895 628 aa9.63□□□□□ -0.87
NUP88-202ENST00000570937 HDGFP51858 240 aaKnown RBP9.63□□□□□ -0.87
NUP88-202ENST00000570937 SWT1Q5T5J6 900 aaKnown RBP9.62□□□□□ -0.87
NUP88-202ENST00000570937 CCDC102AQ96A19 550 aa9.62□□□□□ -0.87
NUP88-202ENST00000570937 PHOX2BQ99453 314 aa9.62□□□□□ -0.87
NUP88-202ENST00000570937 TSR3Q9UJK0 312 aaKnown RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms