RNA–Protein interactions for RNA: ENST00000569243.5

UBR1-209, Transcript of ubiquitin protein ligase E3 component n-recognin 1, human

TSL 3

Gene UBR1, Length 702 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR1-209	ENST00000569243	PCDHGA10	Q9Y5H3	936 aa		11.55	□□□□□ -0.56
UBR1-209	ENST00000569243	NRG2	O14511	850 aa	Predicted RBP	11.53	□□□□□ -0.56
UBR1-209	ENST00000569243	ZNF787	Q6DD87	383 aa		11.53	□□□□□ -0.56
UBR1-209	ENST00000569243	HS6ST3	Q8IZP7	471 aa		11.53	□□□□□ -0.56
UBR1-209	ENST00000569243	MAP3K9	P80192	1104 aa		11.52	□□□□□ -0.57
UBR1-209	ENST00000569243	PRKD2	Q9BZL6	878 aa		11.52	□□□□□ -0.57
UBR1-209	ENST00000569243	NCKAP5L	Q9HCH0	1330 aa		11.52	□□□□□ -0.57
UBR1-209	ENST00000569243	HPS5	Q9UPZ3	1129 aa		11.51	□□□□□ -0.57
UBR1-209	ENST00000569243	PDE4A	P27815	886 aa		11.5	□□□□□ -0.57
UBR1-209	ENST00000569243	TSR3	Q9UJK0	312 aa	Known RBP	11.5	□□□□□ -0.57
UBR1-209	ENST00000569243	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	11.49	□□□□□ -0.57
UBR1-209	ENST00000569243	TYW1B	Q6NUM6	668 aa		11.47	□□□□□ -0.57
UBR1-209	ENST00000569243	ZNF775	Q96BV0	537 aa	Predicted RBP	11.46	□□□□□ -0.57
UBR1-209	ENST00000569243	LRCH3	Q96II8	777 aa		11.46	□□□□□ -0.57
UBR1-209	ENST00000569243	FBXW7	Q969H0	707 aa		11.45	□□□□□ -0.58
UBR1-209	ENST00000569243	ONECUT3	O60422	494 aa	Predicted RBP	11.44	□□□□□ -0.58
UBR1-209	ENST00000569243	FAM98C	Q17RN3	349 aa	Known RBP	11.44	□□□□□ -0.58
UBR1-209	ENST00000569243	LARP6	Q9BRS8	491 aa	Known RBP	11.44	□□□□□ -0.58
UBR1-209	ENST00000569243	CHGA	P10645	457 aa	Known RBP	11.43	□□□□□ -0.58
UBR1-209	ENST00000569243	NKX1-1	Q15270	411 aa	Predicted RBP	11.43	□□□□□ -0.58
UBR1-209	ENST00000569243	PHF14	O94880	888 aa		11.42	□□□□□ -0.58
UBR1-209	ENST00000569243	TRIM6-TRIM34	B2RNG4	842 aa		11.41	□□□□□ -0.58
UBR1-209	ENST00000569243	DDX27	Q96GQ7	796 aa	Known RBP	11.41	□□□□□ -0.58
UBR1-209	ENST00000569243	EMILIN3	Q9NT22	766 aa		11.41	□□□□□ -0.58
UBR1-209	ENST00000569243	C6orf132	Q5T0Z8	1188 aa		11.4	□□□□□ -0.58
UBR1-209	ENST00000569243	TJAP1	Q5JTD0	557 aa		11.39	□□□□□ -0.59
UBR1-209	ENST00000569243	PPP1R18	Q6NYC8	613 aa		11.39	□□□□□ -0.59
UBR1-209	ENST00000569243		V9GY48	417 aa	Predicted RBP	11.39	□□□□□ -0.59
UBR1-209	ENST00000569243	PPP4C	P60510	307 aa		11.38	□□□□□ -0.59
UBR1-209	ENST00000569243	RYDEN	Q9NUL5	291 aa	Known RBP	11.38	□□□□□ -0.59
UBR1-209	ENST00000569243	PDZRN3	Q9UPQ7	1066 aa		11.38	□□□□□ -0.59
UBR1-209	ENST00000569243	MTR	Q99707	1265 aa		11.33	□□□□□ -0.6
UBR1-209	ENST00000569243	RBM33	Q96EV2	1170 aa	Known RBP	11.32	□□□□□ -0.6
UBR1-209	ENST00000569243	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	11.32	□□□□□ -0.6
UBR1-209	ENST00000569243	MFSD10	Q14728	455 aa		11.31	□□□□□ -0.6
UBR1-209	ENST00000569243	EPAS1	Q99814	870 aa		11.31	□□□□□ -0.6
UBR1-209	ENST00000569243	IL21	Q9HBE4	155 aa		11.3	□□□□□ -0.6
UBR1-209	ENST00000569243	ZNF516	Q92618	1163 aa		11.29	□□□□□ -0.6
UBR1-209	ENST00000569243	DNAJC5	Q9H3Z4	198 aa		11.29	□□□□□ -0.6
UBR1-209	ENST00000569243	SAMD7	Q7Z3H4	446 aa		11.27	□□□□□ -0.61
UBR1-209	ENST00000569243	PACS2	Q86VP3	889 aa		11.27	□□□□□ -0.61
UBR1-209	ENST00000569243	TSKS	Q9UJT2	592 aa		11.26	□□□□□ -0.61
UBR1-209	ENST00000569243	SMAP	O00193	183 aa		11.23	□□□□□ -0.61
UBR1-209	ENST00000569243	NKX2-3	Q8TAU0	364 aa		11.23	□□□□□ -0.61
UBR1-209	ENST00000569243	DDX12P	Q92771	950 aa		11.2	□□□□□ -0.62
UBR1-209	ENST00000569243	POTEC	B2RU33	542 aa		11.19	□□□□□ -0.62
UBR1-209	ENST00000569243	DPYSL4	O14531	572 aa		11.18	□□□□□ -0.62
UBR1-209	ENST00000569243	TSR1	Q2NL82	804 aa	Known RBP	11.18	□□□□□ -0.62
UBR1-209	ENST00000569243	GTPBP6	O43824	516 aa	Predicted RBP	11.17	□□□□□ -0.62
UBR1-209	ENST00000569243	RNF40	O75150	1001 aa		11.16	□□□□□ -0.62
UBR1-209	ENST00000569243	GGCX	P38435	758 aa		11.16	□□□□□ -0.62
UBR1-209	ENST00000569243	PKDCC	Q504Y2	493 aa		11.16	□□□□□ -0.62
UBR1-209	ENST00000569243	MAP3K7	O43318	606 aa		11.15	□□□□□ -0.62
UBR1-209	ENST00000569243	APLP1	P51693	650 aa		11.15	□□□□□ -0.62
UBR1-209	ENST00000569243	MYT1	Q01538	1121 aa		11.15	□□□□□ -0.62
UBR1-209	ENST00000569243	TRIM67	Q6ZTA4	783 aa		11.15	□□□□□ -0.62
UBR1-209	ENST00000569243	C3orf80	F5H4A9	247 aa		11.13	□□□□□ -0.63
UBR1-209	ENST00000569243	NBR1	Q14596	966 aa		11.13	□□□□□ -0.63
UBR1-209	ENST00000569243	CDCA7L	Q96GN5	454 aa		11.13	□□□□□ -0.63
UBR1-209	ENST00000569243	FAM198A	Q9UFP1	575 aa		11.13	□□□□□ -0.63
UBR1-209	ENST00000569243	COPS2	P61201	443 aa		11.12	□□□□□ -0.63
UBR1-209	ENST00000569243	EN1	Q05925	392 aa	Predicted RBP	11.12	□□□□□ -0.63
UBR1-209	ENST00000569243	CADPS2	Q86UW7	1296 aa		11.1	□□□□□ -0.63
UBR1-209	ENST00000569243	TMUB1	Q9BVT8	246 aa		11.1	□□□□□ -0.63
UBR1-209	ENST00000569243	PNMA3	Q9UL41	463 aa		11.1	□□□□□ -0.63
UBR1-209	ENST00000569243	DGAT1	O75907	488 aa		11.09	□□□□□ -0.63
UBR1-209	ENST00000569243	PRSS12	P56730	875 aa		11.09	□□□□□ -0.63
UBR1-209	ENST00000569243	TREML4	Q6UXN2	200 aa		11.09	□□□□□ -0.63
UBR1-209	ENST00000569243	TATDN2	Q93075	761 aa		11.09	□□□□□ -0.63
UBR1-209	ENST00000569243	SLC19A1	P41440	591 aa		11.08	□□□□□ -0.64
UBR1-209	ENST00000569243	CAMK2B	Q13554	666 aa		11.08	□□□□□ -0.64
UBR1-209	ENST00000569243	HDGF	P51858	240 aa	Known RBP	11.07	□□□□□ -0.64
UBR1-209	ENST00000569243	NBPF26	B4DH59	902 aa		11.06	□□□□□ -0.64
UBR1-209	ENST00000569243	LCE2A	Q5TA79	106 aa	Predicted RBP	11.05	□□□□□ -0.64
UBR1-209	ENST00000569243	EMID1	Q96A84	441 aa	Predicted RBP	11.04	□□□□□ -0.64
UBR1-209	ENST00000569243	FAM187A	A6NFU0	413 aa		11.02	□□□□□ -0.65
UBR1-209	ENST00000569243	RNF223	E7ERA6	249 aa		11.02	□□□□□ -0.65
UBR1-209	ENST00000569243	ZPR1	O75312	459 aa		11.02	□□□□□ -0.65
UBR1-209	ENST00000569243	NUDT18	Q6ZVK8	323 aa		11.02	□□□□□ -0.65
UBR1-209	ENST00000569243	SPRYD7	Q5W111	196 aa		11.01	□□□□□ -0.65
UBR1-209	ENST00000569243	PRR20E	P86478	221 aa		11	□□□□□ -0.65
UBR1-209	ENST00000569243	PRR20C	P86479	221 aa		11	□□□□□ -0.65
UBR1-209	ENST00000569243	PRR20D	P86480	221 aa		11	□□□□□ -0.65
UBR1-209	ENST00000569243	PRR20B	P86481	221 aa		11	□□□□□ -0.65
UBR1-209	ENST00000569243	PRR20A	P86496	221 aa		11	□□□□□ -0.65
UBR1-209	ENST00000569243	ZNF598	Q86UK7	904 aa	Known RBP	11	□□□□□ -0.65
UBR1-209	ENST00000569243	ST8SIA5	O15466	376 aa		10.99	□□□□□ -0.65
UBR1-209	ENST00000569243	CERK	Q8TCT0	537 aa		10.99	□□□□□ -0.65
UBR1-209	ENST00000569243	TNFRSF10A	O00220	468 aa		10.97	□□□□□ -0.65
UBR1-209	ENST00000569243	NECTIN2	Q92692	538 aa		10.97	□□□□□ -0.65
UBR1-209	ENST00000569243	SWT1	Q5T5J6	900 aa	Known RBP	10.96	□□□□□ -0.65
UBR1-209	ENST00000569243	PRIM1	P49642	420 aa	Known RBP	10.95	□□□□□ -0.66
UBR1-209	ENST00000569243	ZNF697	Q5TEC3	545 aa		10.95	□□□□□ -0.66
UBR1-209	ENST00000569243	AAAS	Q9NRG9	546 aa		10.95	□□□□□ -0.66
UBR1-209	ENST00000569243	PPEF1	O14829	653 aa	Predicted RBP	10.94	□□□□□ -0.66
UBR1-209	ENST00000569243	SLF2	Q8IX21	1173 aa		10.94	□□□□□ -0.66
UBR1-209	ENST00000569243	PDIA6	Q15084	440 aa		10.93	□□□□□ -0.66
UBR1-209	ENST00000569243	LIAT1	Q6ZQX7	453 aa		10.93	□□□□□ -0.66
UBR1-209	ENST00000569243	GDF9	O60383	454 aa		10.92	□□□□□ -0.66
UBR1-209	ENST00000569243	PCDHB3	Q9Y5E6	796 aa		10.92	□□□□□ -0.66

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