RNA–Protein interactions for RNA: ENST00000569240.5

CNOT1-216, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CNOT1, Length 7,660 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-216ENST00000569240 AMER1Q5JTC6 1135 aaPredicted RBP8.71□□□□□ -1.01
CNOT1-216ENST00000569240 R3HCC1Q9Y3T6 440 aaKnown RBP8.71□□□□□ -1.01
CNOT1-216ENST00000569240 DYNC1I1O14576 645 aa8.71□□□□□ -1.01
CNOT1-216ENST00000569240 TERF1P54274 439 aa8.71□□□□□ -1.01
CNOT1-216ENST00000569240 HMGB1P09429 215 aaKnown RBP8.71□□□□□ -1.01
CNOT1-216ENST00000569240 HIRIP3Q9BW71 556 aaPredicted RBP8.71□□□□□ -1.01
CNOT1-216ENST00000569240 ZNF777Q9ULD5 760 aaPredicted RBP8.71□□□□□ -1.02
CNOT1-216ENST00000569240 TRAK2O60296 914 aa8.71□□□□□ -1.02
CNOT1-216ENST00000569240 KIF7Q2M1P5 1343 aa8.71□□□□□ -1.02
CNOT1-216ENST00000569240 SIN3AQ96ST3 1273 aa8.7□□□□□ -1.02
CNOT1-216ENST00000569240 CLCN1P35523 988 aa8.7□□□□□ -1.02
CNOT1-216ENST00000569240 PES1O00541 588 aaKnown RBP8.7□□□□□ -1.02
CNOT1-216ENST00000569240 MFAP1P55081 439 aaKnown RBP8.7□□□□□ -1.02
CNOT1-216ENST00000569240 MNS1Q8NEH6 495 aa8.7□□□□□ -1.02
CNOT1-216ENST00000569240 DNAJC2Q99543 621 aaKnown RBP8.7□□□□□ -1.02
CNOT1-216ENST00000569240 CWC22Q9HCG8 908 aaKnown RBP8.7□□□□□ -1.02
CNOT1-216ENST00000569240 BECN2A8MW95 431 aa8.69□□□□□ -1.02
CNOT1-216ENST00000569240 SASS6Q6UVJ0 657 aa8.69□□□□□ -1.02
CNOT1-216ENST00000569240 EIF3JO75822 258 aaKnown RBP8.69□□□□□ -1.02
CNOT1-216ENST00000569240 ZMYND15Q9H091 742 aa8.69□□□□□ -1.02
CNOT1-216ENST00000569240 BACH2Q9BYV9 841 aa8.69□□□□□ -1.02
CNOT1-216ENST00000569240 WASHC2AQ641Q2 1341 aa8.69□□□□□ -1.02
CNOT1-216ENST00000569240 WASHC2CQ9Y4E1 1318 aa8.69□□□□□ -1.02
CNOT1-216ENST00000569240 P3H3Q8IVL6 736 aa8.69□□□□□ -1.02
CNOT1-216ENST00000569240 CHIC2Q9UKJ5 165 aa8.69□□□□□ -1.02
CNOT1-216ENST00000569240 CNTLNQ9NXG0 1405 aa8.69□□□□□ -1.02
CNOT1-216ENST00000569240 PRIMPOLQ96LW4 560 aa8.68□□□□□ -1.02
CNOT1-216ENST00000569240 TSR1Q2NL82 804 aaKnown RBP8.68□□□□□ -1.02
CNOT1-216ENST00000569240 HS1BP3Q53T59 392 aa8.68□□□□□ -1.02
CNOT1-216ENST00000569240 GPATCH3Q96I76 525 aa8.68□□□□□ -1.02
CNOT1-216ENST00000569240 GRPEL1Q9HAV7 217 aa8.68□□□□□ -1.02
CNOT1-216ENST00000569240 KDM2AQ9Y2K7 1162 aa8.68□□□□□ -1.02
CNOT1-216ENST00000569240 BRPF3Q9ULD4 1205 aa8.68□□□□□ -1.02
CNOT1-216ENST00000569240 LMOD3Q0VAK6 560 aa8.68□□□□□ -1.02
CNOT1-216ENST00000569240 KIF20AO95235 890 aa8.67□□□□□ -1.02
CNOT1-216ENST00000569240 SMG6Q86US8 1419 aaKnown RBP8.67□□□□□ -1.02
CNOT1-216ENST00000569240 BAZ1AQ9NRL2 1556 aaPredicted RBP8.67□□□□□ -1.02
CNOT1-216ENST00000569240 ERLIN1O75477 346 aa8.67□□□□□ -1.02
CNOT1-216ENST00000569240 BRD4O60885 1362 aaPredicted RBP8.67□□□□□ -1.02
CNOT1-216ENST00000569240 NAT10Q9H0A0 1025 aaKnown RBP8.67□□□□□ -1.02
CNOT1-216ENST00000569240 AXDND1Q5T1B0 1012 aaPredicted RBP8.67□□□□□ -1.02
CNOT1-216ENST00000569240 STAC3Q96MF2 364 aa8.67□□□□□ -1.02
CNOT1-216ENST00000569240 HOOK1Q9UJC3 728 aaKnown RBP8.67□□□□□ -1.02
CNOT1-216ENST00000569240 CAGE1Q8TC20 777 aa8.67□□□□□ -1.02
CNOT1-216ENST00000569240 SMAP1Q8IYB5 467 aaPredicted RBP8.66□□□□□ -1.02
CNOT1-216ENST00000569240 ROCK1Q13464 1354 aa8.66□□□□□ -1.02
CNOT1-216ENST00000569240 IPO7O95373 1038 aaKnown RBP8.66□□□□□ -1.02
CNOT1-216ENST00000569240 RRP7BPQ9NSQ0 103 aa8.66□□□□□ -1.02
CNOT1-216ENST00000569240 ZRSR2Q15696 482 aaKnown RBP8.66□□□□□ -1.02
CNOT1-216ENST00000569240 DDX19BQ9UMR2 479 aa8.66□□□□□ -1.02
CNOT1-216ENST00000569240 SCRIBQ14160 1630 aa8.66□□□□□ -1.02
CNOT1-216ENST00000569240 GOLGA6L7A0A1B0GV03 622 aa8.66□□□□□ -1.02
CNOT1-216ENST00000569240 HSP90B1P14625 803 aaKnown RBP8.66□□□□□ -1.02
CNOT1-216ENST00000569240 FAM193AP78312 1265 aa8.65□□□□□ -1.02
CNOT1-216ENST00000569240 GBP3Q9H0R5 595 aa8.65□□□□□ -1.02
CNOT1-216ENST00000569240 TUBB4AP04350 444 aa8.65□□□□□ -1.02
CNOT1-216ENST00000569240 INCENPQ9NQS7 918 aa8.65□□□□□ -1.02
CNOT1-216ENST00000569240 CGNQ9P2M7 1197 aaKnown RBP8.65□□□□□ -1.02
CNOT1-216ENST00000569240 H0YHG0 523 aa8.65□□□□□ -1.02
CNOT1-216ENST00000569240 RUFY1Q96T51 708 aa8.65□□□□□ -1.02
CNOT1-216ENST00000569240 UQCRHLA0A096LP55 91 aa8.65□□□□□ -1.02
CNOT1-216ENST00000569240 UQCRHP07919 91 aa8.65□□□□□ -1.02
CNOT1-216ENST00000569240 TAF7LQ5H9L4 462 aa8.65□□□□□ -1.02
CNOT1-216ENST00000569240 ANKRD20A12PQ8NF67 263 aa8.65□□□□□ -1.02
CNOT1-216ENST00000569240 CCDC112Q8NEF3 446 aa8.65□□□□□ -1.03
CNOT1-216ENST00000569240 POLR3GO15318 223 aaPredicted RBP8.64□□□□□ -1.03
CNOT1-216ENST00000569240 RRP12Q5JTH9 1297 aaKnown RBP8.64□□□□□ -1.03
CNOT1-216ENST00000569240 ARID3AQ99856 593 aa8.64□□□□□ -1.03
CNOT1-216ENST00000569240 SPRYD3Q8NCJ5 442 aa8.64□□□□□ -1.03
CNOT1-216ENST00000569240 C22orf23Q9BZE7 217 aa8.64□□□□□ -1.03
CNOT1-216ENST00000569240 TSPY26PQ9H489 355 aa8.64□□□□□ -1.03
CNOT1-216ENST00000569240 RABEP1Q15276 862 aa8.64□□□□□ -1.03
CNOT1-216ENST00000569240 ZKSCAN2Q63HK3 967 aa8.64□□□□□ -1.03
CNOT1-216ENST00000569240 NBPF1Q3BBV0 1214 aa8.63□□□□□ -1.03
CNOT1-216ENST00000569240 ABCC9O60706 1549 aa8.63□□□□□ -1.03
CNOT1-216ENST00000569240 GNL2Q13823 731 aaKnown RBP8.63□□□□□ -1.03
CNOT1-216ENST00000569240 KIAA0754O94854 1291 aa8.63□□□□□ -1.03
CNOT1-216ENST00000569240 OS9Q13438 667 aaPredicted RBP8.63□□□□□ -1.03
CNOT1-216ENST00000569240 EXOC6Q8TAG9 804 aa8.63□□□□□ -1.03
CNOT1-216ENST00000569240 TIGD1Q96MW7 591 aa8.63□□□□□ -1.03
CNOT1-216ENST00000569240 RBM28Q9NW13 759 aaKnown RBP8.63□□□□□ -1.03
CNOT1-216ENST00000569240 MIA2Q96PC5 1412 aa8.63□□□□□ -1.03
CNOT1-216ENST00000569240 NEMFO60524 1076 aa8.63□□□□□ -1.03
CNOT1-216ENST00000569240 MCM4P33991 863 aa8.63□□□□□ -1.03
CNOT1-216ENST00000569240 PDE3AQ14432 1141 aa8.63□□□□□ -1.03
CNOT1-216ENST00000569240 ITPRIPQ8IWB1 547 aa8.63□□□□□ -1.03
CNOT1-216ENST00000569240 IFT57Q9NWB7 429 aa8.63□□□□□ -1.03
CNOT1-216ENST00000569240 DHX29Q7Z478 1369 aaKnown RBP8.62□□□□□ -1.03
CNOT1-216ENST00000569240 RUFY2Q8WXA3 655 aa8.62□□□□□ -1.03
CNOT1-216ENST00000569240 DDX11Q96FC9 970 aa8.62□□□□□ -1.03
CNOT1-216ENST00000569240 MYO6Q9UM54 1294 aa8.62□□□□□ -1.03
CNOT1-216ENST00000569240 HOMER1Q86YM7 354 aa8.62□□□□□ -1.03
CNOT1-216ENST00000569240 MORC1Q86VD1 984 aa8.62□□□□□ -1.03
CNOT1-216ENST00000569240 CT47B1P0C2W7 299 aaPredicted RBP8.61□□□□□ -1.03
CNOT1-216ENST00000569240 INTS3Q68E01 1043 aaKnown RBP8.61□□□□□ -1.03
CNOT1-216ENST00000569240 TXLNBQ8N3L3 684 aa8.61□□□□□ -1.03
CNOT1-216ENST00000569240 CFDP1Q9UEE9 299 aaPredicted RBP8.61□□□□□ -1.03
CNOT1-216ENST00000569240 MCM3P25205 808 aa8.61□□□□□ -1.03
CNOT1-216ENST00000569240 SSR1P43307 286 aaKnown RBP8.61□□□□□ -1.03
CNOT1-216ENST00000569240 PDCP20941 246 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms