RNA–Protein interactions for RNA: ENST00000568219.5

PALB2-206, Transcript of partner and localizer of BRCA2, humanhuman

TSL 1 (best) BASIC

Gene PALB2, Length 3,963 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-206ENST00000568219 PLCB2Q00722 1185 aa13.81□□□□□ -0.2
PALB2-206ENST00000568219 RWDD1Q9H446 243 aaPredicted RBP13.81□□□□□ -0.2
PALB2-206ENST00000568219 TOP2BQ02880 1626 aa13.81□□□□□ -0.2
PALB2-206ENST00000568219 A0A0U1RQG5 324 aaPredicted RBP13.8□□□□□ -0.2
PALB2-206ENST00000568219 CASKIN1Q8WXD9 1431 aa13.8□□□□□ -0.2
PALB2-206ENST00000568219 CUX1P39880 1505 aa13.79□□□□□ -0.2
PALB2-206ENST00000568219 HNRNPMP52272 730 aaKnown RBP eCLIP13.79□□□□□ -0.2
PALB2-206ENST00000568219 ITPRIPQ8IWB1 547 aa13.79□□□□□ -0.2
PALB2-206ENST00000568219 GBP4Q96PP9 640 aa13.79□□□□□ -0.2
PALB2-206ENST00000568219 MAPK8IP3Q9UPT6 1336 aa13.78□□□□□ -0.2
PALB2-206ENST00000568219 U2SURPO15042 1029 aaKnown RBP13.78□□□□□ -0.2
PALB2-206ENST00000568219 RAD54L2Q9Y4B4 1467 aa13.78□□□□□ -0.2
PALB2-206ENST00000568219 C8orf34Q49A92 452 aa13.78□□□□□ -0.2
PALB2-206ENST00000568219 PMFBP1Q8TBY8 1022 aa13.78□□□□□ -0.2
PALB2-206ENST00000568219 CHMP5Q9NZZ3 219 aa13.77□□□□□ -0.2
PALB2-206ENST00000568219 FOXD4L5Q5VV16 416 aaPredicted RBP13.77□□□□□ -0.21
PALB2-206ENST00000568219 FOXD4L4Q8WXT5 416 aaPredicted RBP13.77□□□□□ -0.21
PALB2-206ENST00000568219 RNF123Q5XPI4 1314 aa13.77□□□□□ -0.21
PALB2-206ENST00000568219 SLC24A1O60721 1099 aa13.77□□□□□ -0.21
PALB2-206ENST00000568219 SEC24BO95487 1268 aa13.77□□□□□ -0.21
PALB2-206ENST00000568219 XRCC6P12956 609 aaKnown RBP eCLIP13.76□□□□□ -0.21
PALB2-206ENST00000568219 CDCA8Q53HL2 280 aa13.76□□□□□ -0.21
PALB2-206ENST00000568219 APBB1O00213 710 aa13.76□□□□□ -0.21
PALB2-206ENST00000568219 MCM4P33991 863 aa13.76□□□□□ -0.21
PALB2-206ENST00000568219 MRE11P49959 708 aa13.76□□□□□ -0.21
PALB2-206ENST00000568219 DDX49Q9Y6V7 483 aaKnown RBP13.76□□□□□ -0.21
PALB2-206ENST00000568219 FGD5Q6ZNL6 1462 aa13.76□□□□□ -0.21
PALB2-206ENST00000568219 ESPNB1AK53 854 aa13.75□□□□□ -0.21
PALB2-206ENST00000568219 C22orf23Q9BZE7 217 aa13.75□□□□□ -0.21
PALB2-206ENST00000568219 MAP3K1Q13233 1512 aa13.75□□□□□ -0.21
PALB2-206ENST00000568219 ANKRD30BQ9BXX2 1392 aa13.75□□□□□ -0.21
PALB2-206ENST00000568219 IGHDP01880 384 aa13.75□□□□□ -0.21
PALB2-206ENST00000568219 CGNL1Q0VF96 1302 aa13.74□□□□□ -0.21
PALB2-206ENST00000568219 MORC1Q86VD1 984 aa13.73□□□□□ -0.21
PALB2-206ENST00000568219 PDZRN3Q9UPQ7 1066 aa13.73□□□□□ -0.21
PALB2-206ENST00000568219 R3HCC1Q9Y3T6 440 aaKnown RBP13.73□□□□□ -0.21
PALB2-206ENST00000568219 DDX11L8A8MPP1 907 aa13.73□□□□□ -0.21
PALB2-206ENST00000568219 CHMP7Q8WUX9 453 aaPredicted RBP13.73□□□□□ -0.21
PALB2-206ENST00000568219 E9PSI1 815 aa13.73□□□□□ -0.21
PALB2-206ENST00000568219 U2AF1L5P0DN76 240 aaPredicted RBP13.73□□□□□ -0.21
PALB2-206ENST00000568219 U2AF1Q01081 240 aaKnown RBP eCLIP13.73□□□□□ -0.21
PALB2-206ENST00000568219 TBC1D2Q9BYX2 928 aa13.72□□□□□ -0.21
PALB2-206ENST00000568219 GRPEL1Q9HAV7 217 aa13.72□□□□□ -0.21
PALB2-206ENST00000568219 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.72□□□□□ -0.21
PALB2-206ENST00000568219 SMC4Q9NTJ3 1288 aa13.72□□□□□ -0.21
PALB2-206ENST00000568219 PCF11O94913 1555 aaKnown RBP13.72□□□□□ -0.21
PALB2-206ENST00000568219 FOXD4L6Q3SYB3 417 aaPredicted RBP13.72□□□□□ -0.21
PALB2-206ENST00000568219 FOXD4L3Q6VB84 417 aaPredicted RBP13.72□□□□□ -0.21
PALB2-206ENST00000568219 ANKRD30AQ9BXX3 1397 aa13.71□□□□□ -0.21
PALB2-206ENST00000568219 RRP9O43818 475 aaKnown RBP13.71□□□□□ -0.21
PALB2-206ENST00000568219 CADPSQ9ULU8 1353 aa13.71□□□□□ -0.21
PALB2-206ENST00000568219 PPP2R1AP30153 589 aa13.71□□□□□ -0.22
PALB2-206ENST00000568219 CFAP53Q96M91 514 aa13.71□□□□□ -0.22
PALB2-206ENST00000568219 FYCO1Q9BQS8 1478 aa13.71□□□□□ -0.22
PALB2-206ENST00000568219 CALD1Q05682 793 aaKnown RBP13.7□□□□□ -0.22
PALB2-206ENST00000568219 DHX29Q7Z478 1369 aaKnown RBP13.7□□□□□ -0.22
PALB2-206ENST00000568219 KIAA1211Q6ZU35 1233 aa13.7□□□□□ -0.22
PALB2-206ENST00000568219 DUSP27Q5VZP5 1158 aa13.69□□□□□ -0.22
PALB2-206ENST00000568219 MPNDQ8N594 471 aa13.69□□□□□ -0.22
PALB2-206ENST00000568219 SAFB2Q14151 953 aaKnown RBP eCLIP13.68□□□□□ -0.22
PALB2-206ENST00000568219 LNPKQ9C0E8 428 aa13.68□□□□□ -0.22
PALB2-206ENST00000568219 PTPN23Q9H3S7 1636 aa13.67□□□□□ -0.22
PALB2-206ENST00000568219 NASPP49321 788 aaPredicted RBP13.67□□□□□ -0.22
PALB2-206ENST00000568219 NOL8Q76FK4 1167 aaKnown RBP13.66□□□□□ -0.22
PALB2-206ENST00000568219 PODXL2Q9NZ53 605 aa13.66□□□□□ -0.22
PALB2-206ENST00000568219 ELL2O00472 640 aaPredicted RBP13.65□□□□□ -0.22
PALB2-206ENST00000568219 SLFN5Q08AF3 891 aa13.65□□□□□ -0.22
PALB2-206ENST00000568219 ANKRD45Q5TZF3 282 aa13.65□□□□□ -0.22
PALB2-206ENST00000568219 RNF214Q8ND24 703 aa13.64□□□□□ -0.23
PALB2-206ENST00000568219 MIA2Q96PC5 1412 aa13.63□□□□□ -0.23
PALB2-206ENST00000568219 CLCN1P35523 988 aa13.63□□□□□ -0.23
PALB2-206ENST00000568219 MCTP1Q6DN14 999 aa13.63□□□□□ -0.23
PALB2-206ENST00000568219 RPRD2Q5VT52 1461 aaKnown RBP13.62□□□□□ -0.23
PALB2-206ENST00000568219 ZKSCAN2Q63HK3 967 aa13.62□□□□□ -0.23
PALB2-206ENST00000568219 PRDM10Q9NQV6 1147 aa13.62□□□□□ -0.23
PALB2-206ENST00000568219 CAVIN1Q6NZI2 390 aaKnown RBP13.61□□□□□ -0.23
PALB2-206ENST00000568219 CCDC144AA2RUR9 1427 aa13.61□□□□□ -0.23
PALB2-206ENST00000568219 DZIP1LQ8IYY4 767 aaKnown RBP13.61□□□□□ -0.23
PALB2-206ENST00000568219 SPINK5Q9NQ38 1064 aaPredicted RBP13.61□□□□□ -0.23
PALB2-206ENST00000568219 TNNQ9UQP3 1299 aa13.6□□□□□ -0.23
PALB2-206ENST00000568219 PDE3AQ14432 1141 aa13.6□□□□□ -0.23
PALB2-206ENST00000568219 SKOR2Q2VWA4 1001 aaPredicted RBP13.6□□□□□ -0.23
PALB2-206ENST00000568219 TCP11L2Q8N4U5 519 aa13.59□□□□□ -0.23
PALB2-206ENST00000568219 BCL11BQ9C0K0 894 aaPredicted RBP13.59□□□□□ -0.23
PALB2-206ENST00000568219 ANKRD50Q9ULJ7 1429 aa13.59□□□□□ -0.23
PALB2-206ENST00000568219 KIAA1107Q9UPP5 1409 aa13.58□□□□□ -0.23
PALB2-206ENST00000568219 TSR2Q969E8 191 aaKnown RBP13.58□□□□□ -0.24
PALB2-206ENST00000568219 KDM2BQ8NHM5 1336 aa13.58□□□□□ -0.24
PALB2-206ENST00000568219 TPM2P07951 284 aa13.58□□□□□ -0.24
PALB2-206ENST00000568219 PCDHB15Q9Y5E8 787 aa13.58□□□□□ -0.24
PALB2-206ENST00000568219 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.57□□□□□ -0.24
PALB2-206ENST00000568219 TBC1D32Q96NH3 1257 aa13.57□□□□□ -0.24
PALB2-206ENST00000568219 XPCQ01831 940 aaPredicted RBP13.56□□□□□ -0.24
PALB2-206ENST00000568219 KIAA2012Q0VF49 1180 aa13.56□□□□□ -0.24
PALB2-206ENST00000568219 TNPO1Q92973 898 aaKnown RBP13.56□□□□□ -0.24
PALB2-206ENST00000568219 TRAK1Q9UPV9 953 aa13.56□□□□□ -0.24
PALB2-206ENST00000568219 LRPPRCP42704 1394 aaKnown RBP13.55□□□□□ -0.24
PALB2-206ENST00000568219 PLEKHH1Q9ULM0 1364 aa13.55□□□□□ -0.24
PALB2-206ENST00000568219 IPO8O15397 1037 aaKnown RBP13.55□□□□□ -0.24
PALB2-206ENST00000568219 FANCD2Q9BXW9 1451 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms