RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 GGT6Q6P531 493 aa17.44■□□□□ 0.38
CDH3-206ENST00000567674 SHANK2Q9UPX8 1470 aa17.42■□□□□ 0.38
CDH3-206ENST00000567674 NCOA1Q15788 1441 aa17.41■□□□□ 0.38
CDH3-206ENST00000567674 TCOF1Q13428 1488 aaKnown RBP17.4■□□□□ 0.38
CDH3-206ENST00000567674 UBAP1LF5GYI3 381 aa17.4■□□□□ 0.38
CDH3-206ENST00000567674 KIF3BO15066 747 aa17.4■□□□□ 0.38
CDH3-206ENST00000567674 FGD6Q6ZV73 1430 aa17.38■□□□□ 0.37
CDH3-206ENST00000567674 PTPRKQ15262 1439 aa17.38■□□□□ 0.37
CDH3-206ENST00000567674 EIF2AK4Q9P2K8 1649 aaKnown RBP17.37■□□□□ 0.37
CDH3-206ENST00000567674 WASHC2CQ9Y4E1 1318 aa17.37■□□□□ 0.37
CDH3-206ENST00000567674 KDM5DQ9BY66 1539 aa17.37■□□□□ 0.37
CDH3-206ENST00000567674 DUOX2Q9NRD8 1548 aa17.36■□□□□ 0.37
CDH3-206ENST00000567674 MED1Q15648 1581 aaPredicted RBP17.35■□□□□ 0.37
CDH3-206ENST00000567674 PTPN23Q9H3S7 1636 aa17.35■□□□□ 0.37
CDH3-206ENST00000567674 ABCC5O15440 1437 aa17.34■□□□□ 0.37
CDH3-206ENST00000567674 PZPP20742 1482 aa17.34■□□□□ 0.37
CDH3-206ENST00000567674 CLTCQ00610 1675 aaKnown RBP17.34■□□□□ 0.37
CDH3-206ENST00000567674 ERBINQ96RT1 1412 aa17.34■□□□□ 0.37
CDH3-206ENST00000567674 RNF17Q9BXT8 1623 aaKnown RBP17.33■□□□□ 0.37
CDH3-206ENST00000567674 PLA2R1Q13018 1463 aa17.32■□□□□ 0.36
CDH3-206ENST00000567674 DAPK1P53355 1430 aa17.32■□□□□ 0.36
CDH3-206ENST00000567674 ZNF335Q9H4Z2 1342 aaPredicted RBP17.32■□□□□ 0.36
CDH3-206ENST00000567674 PKD2Q13563 968 aa17.32■□□□□ 0.36
CDH3-206ENST00000567674 ANKRD30AQ9BXX3 1397 aa17.31■□□□□ 0.36
CDH3-206ENST00000567674 DNMT1P26358 1616 aaKnown RBP17.31■□□□□ 0.36
CDH3-206ENST00000567674 CAMSAP1Q5T5Y3 1602 aa17.31■□□□□ 0.36
CDH3-206ENST00000567674 ZC3H13Q5T200 1668 aaKnown RBP17.3■□□□□ 0.36
CDH3-206ENST00000567674 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.29■□□□□ 0.36
CDH3-206ENST00000567674 KIF15Q9NS87 1388 aa17.29■□□□□ 0.36
CDH3-206ENST00000567674 ZNF142P52746 1687 aaPredicted RBP17.29■□□□□ 0.36
CDH3-206ENST00000567674 A2ML1A8K2U0 1454 aa17.28■□□□□ 0.36
CDH3-206ENST00000567674 NLRP1Q9C000 1473 aa17.28■□□□□ 0.36
CDH3-206ENST00000567674 CROCC2H7BZ55 1655 aa17.28■□□□□ 0.36
CDH3-206ENST00000567674 ARHGAP31Q2M1Z3 1444 aa17.28■□□□□ 0.36
CDH3-206ENST00000567674 ADGRL2O95490 1459 aa17.27■□□□□ 0.36
CDH3-206ENST00000567674 TNRQ92752 1358 aa17.26■□□□□ 0.35
CDH3-206ENST00000567674 CEP170BQ9Y4F5 1589 aaPredicted RBP17.25■□□□□ 0.35
CDH3-206ENST00000567674 HSPA1LP34931 641 aa17.25■□□□□ 0.35
CDH3-206ENST00000567674 NCKAP5LQ9HCH0 1330 aa17.24■□□□□ 0.35
CDH3-206ENST00000567674 THEMISQ8N1K5 641 aaPredicted RBP17.24■□□□□ 0.35
CDH3-206ENST00000567674 MYO3AQ8NEV4 1616 aa17.24■□□□□ 0.35
CDH3-206ENST00000567674 ABCC3O15438 1527 aa17.23■□□□□ 0.35
CDH3-206ENST00000567674 PRDM15P57071 1507 aaPredicted RBP17.23■□□□□ 0.35
CDH3-206ENST00000567674 PHF23Q9BUL5 403 aaPredicted RBP17.23■□□□□ 0.35
CDH3-206ENST00000567674 RRP7BPQ9NSQ0 103 aa17.23■□□□□ 0.35
CDH3-206ENST00000567674 KANK1Q14678 1352 aa17.23■□□□□ 0.35
CDH3-206ENST00000567674 ROCK1Q13464 1354 aa17.21■□□□□ 0.35
CDH3-206ENST00000567674 SCAF1Q9H7N4 1312 aaKnown RBP17.21■□□□□ 0.34
CDH3-206ENST00000567674 TOM1O60784 492 aa17.2■□□□□ 0.34
CDH3-206ENST00000567674 FBXO31Q5XUX0 539 aaPredicted RBP17.2■□□□□ 0.34
CDH3-206ENST00000567674 DEPDC5O75140 1603 aa17.2■□□□□ 0.34
CDH3-206ENST00000567674 MROH1Q8NDA8 1641 aa17.2■□□□□ 0.34
CDH3-206ENST00000567674 LMTK2Q8IWU2 1503 aa17.2■□□□□ 0.34
CDH3-206ENST00000567674 PIP4K2BP78356 416 aa17.18■□□□□ 0.34
CDH3-206ENST00000567674 FAM50AQ14320 339 aaKnown RBP17.18■□□□□ 0.34
CDH3-206ENST00000567674 ANKLE2Q86XL3 938 aa17.17■□□□□ 0.34
CDH3-206ENST00000567674 ERVK-7P63135 1459 aa17.16■□□□□ 0.34
CDH3-206ENST00000567674 VWDEQ8N2E2 1590 aa17.15■□□□□ 0.34
CDH3-206ENST00000567674 UGGT1Q9NYU2 1555 aa17.15■□□□□ 0.34
CDH3-206ENST00000567674 ANKRD50Q9ULJ7 1429 aa17.15■□□□□ 0.34
CDH3-206ENST00000567674 MED14O60244 1454 aa17.14■□□□□ 0.33
CDH3-206ENST00000567674 CHIC2Q9UKJ5 165 aa17.14■□□□□ 0.33
CDH3-206ENST00000567674 CPS1P31327 1500 aa17.14■□□□□ 0.33
CDH3-206ENST00000567674 RPRD2Q5VT52 1461 aaKnown RBP17.13■□□□□ 0.33
CDH3-206ENST00000567674 SLC52A1Q9NWF4 448 aa17.11■□□□□ 0.33
CDH3-206ENST00000567674 KDM5AP29375 1690 aaKnown RBP17.09■□□□□ 0.33
CDH3-206ENST00000567674 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.08■□□□□ 0.32
CDH3-206ENST00000567674 RRBP1Q9P2E9 1410 aaKnown RBP17.07■□□□□ 0.32
CDH3-206ENST00000567674 CEP152O94986 1710 aa17.07■□□□□ 0.32
CDH3-206ENST00000567674 NOS1P29475 1434 aa17.06■□□□□ 0.32
CDH3-206ENST00000567674 SLIT1O75093 1534 aa17.06■□□□□ 0.32
CDH3-206ENST00000567674 POLR1AO95602 1720 aaPredicted RBP17.05■□□□□ 0.32
CDH3-206ENST00000567674 EFCAB6Q5THR3 1501 aa17.05■□□□□ 0.32
CDH3-206ENST00000567674 EID1Q9Y6B2 187 aa17.04■□□□□ 0.32
CDH3-206ENST00000567674 ARHGAP23Q9P227 1491 aa17.04■□□□□ 0.32
CDH3-206ENST00000567674 NPHP4O75161 1426 aaPredicted RBP17.04■□□□□ 0.32
CDH3-206ENST00000567674 NEURL4Q96JN8 1562 aa17.02■□□□□ 0.32
CDH3-206ENST00000567674 HDGFP51858 240 aaKnown RBP17.02■□□□□ 0.32
CDH3-206ENST00000567674 UNC13BO14795 1591 aa17.02■□□□□ 0.31
CDH3-206ENST00000567674 ACIN1Q9UKV3 1341 aaKnown RBP17.01■□□□□ 0.31
CDH3-206ENST00000567674 UBR1Q8IWV7 1749 aa17.01■□□□□ 0.31
CDH3-206ENST00000567674 IDI1Q13907 227 aa17■□□□□ 0.31
CDH3-206ENST00000567674 TET3O43151 1660 aa17■□□□□ 0.31
CDH3-206ENST00000567674 TMEM2Q9UHN6 1383 aa17■□□□□ 0.31
CDH3-206ENST00000567674 ALKQ9UM73 1620 aa16.99■□□□□ 0.31
CDH3-206ENST00000567674 SCAF11Q99590 1463 aaKnown RBP16.99■□□□□ 0.31
CDH3-206ENST00000567674 STAG3Q9UJ98 1225 aa16.99■□□□□ 0.31
CDH3-206ENST00000567674 TXNDC2Q86VQ3 553 aa16.98■□□□□ 0.31
CDH3-206ENST00000567674 RGS17Q9UGC6 210 aaPredicted RBP16.98■□□□□ 0.31
CDH3-206ENST00000567674 IQGAP1P46940 1657 aa16.96■□□□□ 0.31
CDH3-206ENST00000567674 GCC2Q8IWJ2 1684 aa16.96■□□□□ 0.31
CDH3-206ENST00000567674 IQGAP3Q86VI3 1631 aa16.96■□□□□ 0.3
CDH3-206ENST00000567674 NUP155O75694 1391 aa16.94■□□□□ 0.3
CDH3-206ENST00000567674 CFAP65Q6ZU64 1925 aaKnown RBP16.94■□□□□ 0.3
CDH3-206ENST00000567674 SYNMO15061 1565 aa16.94■□□□□ 0.3
CDH3-206ENST00000567674 PIK3C2BO00750 1634 aa16.93■□□□□ 0.3
CDH3-206ENST00000567674 LTKP29376 864 aa16.93■□□□□ 0.3
CDH3-206ENST00000567674 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.93■□□□□ 0.3
CDH3-206ENST00000567674 ADGRB3O60242 1522 aa16.91■□□□□ 0.3
CDH3-206ENST00000567674 HFM1A2PYH4 1435 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms