RNA–Protein interactions for RNA: ENST00000565545.1

CSPG4P13-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 13, humanhuman

TSL 5

Gene CSPG4P13, Length 657 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P13-201ENST00000565545 REREQ9P2R6 1566 aa28.33■■■□□ 2.12
CSPG4P13-201ENST00000565545 ABCA6Q8N139 1617 aa28.32■■■□□ 2.12
CSPG4P13-201ENST00000565545 NCOA1Q15788 1441 aa28.31■■■□□ 2.12
CSPG4P13-201ENST00000565545 RRP7BPQ9NSQ0 103 aa28.3■■■□□ 2.12
CSPG4P13-201ENST00000565545 AGLP35573 1532 aa28.29■■■□□ 2.12
CSPG4P13-201ENST00000565545 SETD1BQ9UPS6 1966 aaKnown RBP28.28■■■□□ 2.12
CSPG4P13-201ENST00000565545 CCER1Q8TC90 406 aaPredicted RBP28.28■■■□□ 2.12
CSPG4P13-201ENST00000565545 SPAG9O60271 1321 aaKnown RBP28.26■■■□□ 2.11
CSPG4P13-201ENST00000565545 CNTLNQ9NXG0 1405 aa28.25■■■□□ 2.11
CSPG4P13-201ENST00000565545 STRCQ7RTU9 1775 aa28.23■■■□□ 2.11
CSPG4P13-201ENST00000565545 PLXNC1O60486 1568 aa28.21■■■□□ 2.11
CSPG4P13-201ENST00000565545 RTEL1-TNFRSF6BF6WH68 1400 aa28.21■■■□□ 2.11
CSPG4P13-201ENST00000565545 PTPRTO14522 1441 aa28.21■■■□□ 2.11
CSPG4P13-201ENST00000565545 C3P01024 1663 aa28.21■■■□□ 2.11
CSPG4P13-201ENST00000565545 ZEB1P37275 1124 aaPredicted RBP28.19■■■□□ 2.1
CSPG4P13-201ENST00000565545 KIDINS220Q9ULH0 1771 aa28.19■■■□□ 2.1
CSPG4P13-201ENST00000565545 DHX57Q6P158 1386 aaKnown RBP28.18■■■□□ 2.1
CSPG4P13-201ENST00000565545 CLSPNQ9HAW4 1339 aa28.16■■■□□ 2.1
CSPG4P13-201ENST00000565545 ZMYM3Q14202 1370 aa28.15■■■□□ 2.1
CSPG4P13-201ENST00000565545 KIF15Q9NS87 1388 aa28.15■■■□□ 2.1
CSPG4P13-201ENST00000565545 ANKRD50Q9ULJ7 1429 aa28.13■■■□□ 2.09
CSPG4P13-201ENST00000565545 DISP3Q9P2K9 1392 aa28.12■■■□□ 2.09
CSPG4P13-201ENST00000565545 INO80Q9ULG1 1556 aaPredicted RBP28.11■■■□□ 2.09
CSPG4P13-201ENST00000565545 GGT6Q6P531 493 aa28.11■■■□□ 2.09
CSPG4P13-201ENST00000565545 NPATQ14207 1427 aa28.1■■■□□ 2.09
CSPG4P13-201ENST00000565545 ATP7AQ04656 1500 aa28.09■■■□□ 2.09
CSPG4P13-201ENST00000565545 DUOX2Q9NRD8 1548 aa28.09■■■□□ 2.09
CSPG4P13-201ENST00000565545 NCKAP5LQ9HCH0 1330 aa28.06■■■□□ 2.08
CSPG4P13-201ENST00000565545 A2MP01023 1474 aa28.06■■■□□ 2.08
CSPG4P13-201ENST00000565545 CAMSAP1Q5T5Y3 1602 aa28.03■■■□□ 2.08
CSPG4P13-201ENST00000565545 ERBINQ96RT1 1412 aa28.02■■■□□ 2.08
CSPG4P13-201ENST00000565545 TRIM52Q96A61 297 aa28.01■■■□□ 2.07
CSPG4P13-201ENST00000565545 LTBP4Q8N2S1 1624 aa28■■■□□ 2.07
CSPG4P13-201ENST00000565545 ILDR2Q71H61 639 aa27.99■■■□□ 2.07
CSPG4P13-201ENST00000565545 PPP6R1Q9UPN7 881 aa27.99■■■□□ 2.07
CSPG4P13-201ENST00000565545 MROH2AA6NES4 1674 aa27.99■■■□□ 2.07
CSPG4P13-201ENST00000565545 PKD2Q13563 968 aa27.98■■■□□ 2.07
CSPG4P13-201ENST00000565545 ZNF335Q9H4Z2 1342 aaPredicted RBP27.95■■■□□ 2.07
CSPG4P13-201ENST00000565545 KDM5DQ9BY66 1539 aa27.95■■■□□ 2.06
CSPG4P13-201ENST00000565545 CLTCQ00610 1675 aaKnown RBP27.94■■■□□ 2.06
CSPG4P13-201ENST00000565545 IQSEC2Q5JU85 1478 aa27.94■■■□□ 2.06
CSPG4P13-201ENST00000565545 UNC13BO14795 1591 aa27.93■■■□□ 2.06
CSPG4P13-201ENST00000565545 DHX29Q7Z478 1369 aaKnown RBP27.92■■■□□ 2.06
CSPG4P13-201ENST00000565545 EIF2AK4Q9P2K8 1649 aaKnown RBP27.92■■■□□ 2.06
CSPG4P13-201ENST00000565545 UBAP1LF5GYI3 381 aa27.91■■■□□ 2.06
CSPG4P13-201ENST00000565545 MPHOSPH9Q99550 1183 aa27.91■■■□□ 2.06
CSPG4P13-201ENST00000565545 SOCS7O14512 581 aa27.88■■■□□ 2.05
CSPG4P13-201ENST00000565545 PZPP20742 1482 aa27.88■■■□□ 2.05
CSPG4P13-201ENST00000565545 PLA2R1Q13018 1463 aa27.88■■■□□ 2.05
CSPG4P13-201ENST00000565545 KIF3BO15066 747 aa27.87■■■□□ 2.05
CSPG4P13-201ENST00000565545 NUP155O75694 1391 aa27.86■■■□□ 2.05
CSPG4P13-201ENST00000565545 CEP170BQ9Y4F5 1589 aaPredicted RBP27.86■■■□□ 2.05
CSPG4P13-201ENST00000565545 MYO3AQ8NEV4 1616 aa27.85■■■□□ 2.05
CSPG4P13-201ENST00000565545 SLC4A1APQ9BWU0 796 aaKnown RBP27.85■■■□□ 2.05
CSPG4P13-201ENST00000565545 DEPDC5O75140 1603 aa27.82■■■□□ 2.04
CSPG4P13-201ENST00000565545 IQGAP3Q86VI3 1631 aa27.81■■■□□ 2.04
CSPG4P13-201ENST00000565545 FBXO31Q5XUX0 539 aaPredicted RBP27.81■■■□□ 2.04
CSPG4P13-201ENST00000565545 SPATA31D1Q6ZQQ2 1576 aa27.81■■■□□ 2.04
CSPG4P13-201ENST00000565545 ZNF142P52746 1687 aaPredicted RBP27.79■■■□□ 2.04
CSPG4P13-201ENST00000565545 A2ML1A8K2U0 1454 aa27.79■■■□□ 2.04
CSPG4P13-201ENST00000565545 WASHC2CQ9Y4E1 1318 aa27.79■■■□□ 2.04
CSPG4P13-201ENST00000565545 FAM135AQ9P2D6 1515 aa27.78■■■□□ 2.04
CSPG4P13-201ENST00000565545 TNRQ92752 1358 aa27.77■■■□□ 2.04
CSPG4P13-201ENST00000565545 RNF17Q9BXT8 1623 aaKnown RBP27.75■■■□□ 2.03
CSPG4P13-201ENST00000565545 KANK1Q14678 1352 aa27.73■■■□□ 2.03
CSPG4P13-201ENST00000565545 TIMELESSQ9UNS1 1208 aa27.73■■■□□ 2.03
CSPG4P13-201ENST00000565545 PRDM15P57071 1507 aaPredicted RBP27.72■■■□□ 2.03
CSPG4P13-201ENST00000565545 SCAF1Q9H7N4 1312 aaKnown RBP27.72■■■□□ 2.03
CSPG4P13-201ENST00000565545 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.72■■■□□ 2.03
CSPG4P13-201ENST00000565545 ANKLE2Q86XL3 938 aa27.71■■■□□ 2.03
CSPG4P13-201ENST00000565545 VWDEQ8N2E2 1590 aa27.71■■■□□ 2.03
CSPG4P13-201ENST00000565545 ANKRD30BQ9BXX2 1392 aa27.71■■■□□ 2.03
CSPG4P13-201ENST00000565545 THEMISQ8N1K5 641 aaPredicted RBP27.7■■■□□ 2.02
CSPG4P13-201ENST00000565545 MROH1Q8NDA8 1641 aa27.68■■■□□ 2.02
CSPG4P13-201ENST00000565545 PIP4K2BP78356 416 aa27.68■■■□□ 2.02
CSPG4P13-201ENST00000565545 SIN3AQ96ST3 1273 aa27.67■■■□□ 2.02
CSPG4P13-201ENST00000565545 TOM1O60784 492 aa27.66■■■□□ 2.02
CSPG4P13-201ENST00000565545 TET3O43151 1660 aa27.65■■■□□ 2.02
CSPG4P13-201ENST00000565545 FOXD1Q16676 465 aa27.63■■■□□ 2.01
CSPG4P13-201ENST00000565545 NEUROD1Q13562 356 aa27.62■■■□□ 2.01
CSPG4P13-201ENST00000565545 LMTK2Q8IWU2 1503 aa27.62■■■□□ 2.01
CSPG4P13-201ENST00000565545 HSPA1LP34931 641 aa27.6■■■□□ 2.01
CSPG4P13-201ENST00000565545 NLRP1Q9C000 1473 aa27.58■■■□□ 2.01
CSPG4P13-201ENST00000565545 CPS1P31327 1500 aa27.58■■■□□ 2.01
CSPG4P13-201ENST00000565545 RPRD2Q5VT52 1461 aaKnown RBP27.57■■■□□ 2
CSPG4P13-201ENST00000565545 NEURL4Q96JN8 1562 aa27.56■■■□□ 2
CSPG4P13-201ENST00000565545 E9PCH4 1651 aa27.56■■■□□ 2
CSPG4P13-201ENST00000565545 TONSLQ96HA7 1378 aa27.55■■■□□ 2
CSPG4P13-201ENST00000565545 NPHP4O75161 1426 aaPredicted RBP27.55■■■□□ 2
CSPG4P13-201ENST00000565545 ZC3H13Q5T200 1668 aaKnown RBP27.55■■■□□ 2
CSPG4P13-201ENST00000565545 UGGT1Q9NYU2 1555 aa27.54■■■□□ 2
CSPG4P13-201ENST00000565545 CEP152O94986 1710 aa27.53■■■□□ 2
CSPG4P13-201ENST00000565545 POLR1AO95602 1720 aaPredicted RBP27.53■■■□□ 2
CSPG4P13-201ENST00000565545 EFCAB6Q5THR3 1501 aa27.51■■■□□ 2
CSPG4P13-201ENST00000565545 ABCC3O15438 1527 aa27.5■■□□□ 1.99
CSPG4P13-201ENST00000565545 MED14O60244 1454 aa27.47■■□□□ 1.99
CSPG4P13-201ENST00000565545 SPHKAPQ2M3C7 1700 aa27.47■■□□□ 1.99
CSPG4P13-201ENST00000565545 CCDC144AA2RUR9 1427 aa27.45■■□□□ 1.98
CSPG4P13-201ENST00000565545 TRPM2O94759 1503 aa27.43■■□□□ 1.98
CSPG4P13-201ENST00000565545 ARHGAP31Q2M1Z3 1444 aa27.42■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms