RNA–Protein interactions for RNA: ENST00000565038.1

PALB2-203, Transcript of partner and localizer of BRCA2, humanhuman

TSL 3

Gene PALB2, Length 344 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-203ENST00000565038 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.23□□□□□ -0.77
PALB2-203ENST00000565038 KCNK17Q96T54 332 aa10.23□□□□□ -0.77
PALB2-203ENST00000565038 C6orf132Q5T0Z8 1188 aa10.22□□□□□ -0.77
PALB2-203ENST00000565038 NUTM2FA1L443 756 aa10.21□□□□□ -0.77
PALB2-203ENST00000565038 PSEN2P49810 448 aa10.21□□□□□ -0.77
PALB2-203ENST00000565038 CDHR5Q9HBB8 845 aa10.21□□□□□ -0.77
PALB2-203ENST00000565038 PTPREP23469 700 aa10.2□□□□□ -0.78
PALB2-203ENST00000565038 LMOD2Q6P5Q4 547 aa10.2□□□□□ -0.78
PALB2-203ENST00000565038 CDAN1Q8IWY9 1227 aa10.19□□□□□ -0.78
PALB2-203ENST00000565038 ARHGAP33O14559 1287 aa10.18□□□□□ -0.78
PALB2-203ENST00000565038 COL9A1P20849 921 aa10.18□□□□□ -0.78
PALB2-203ENST00000565038 DMRTA1Q5VZB9 504 aa10.17□□□□□ -0.78
PALB2-203ENST00000565038 PBX2P40425 430 aa10.16□□□□□ -0.78
PALB2-203ENST00000565038 KCNH8Q96L42 1107 aa10.16□□□□□ -0.78
PALB2-203ENST00000565038 GPIHBP1Q8IV16 184 aa10.15□□□□□ -0.78
PALB2-203ENST00000565038 KRTAP3-3Q9BYR6 98 aa10.14□□□□□ -0.79
PALB2-203ENST00000565038 KRTAP3-2Q9BYR7 98 aa10.14□□□□□ -0.79
PALB2-203ENST00000565038 NPDC1Q9NQX5 325 aaPredicted RBP10.14□□□□□ -0.79
PALB2-203ENST00000565038 PPP1R3GB7ZBB8 358 aa10.13□□□□□ -0.79
PALB2-203ENST00000565038 PTGDRQ13258 359 aa10.12□□□□□ -0.79
PALB2-203ENST00000565038 ANKRD13DQ6ZTN6 518 aa10.12□□□□□ -0.79
PALB2-203ENST00000565038 FCHSD2O94868 740 aa10.11□□□□□ -0.79
PALB2-203ENST00000565038 LSM11P83369 360 aaKnown RBP eCLIP10.11□□□□□ -0.79
PALB2-203ENST00000565038 GPR37O15354 613 aa10.1□□□□□ -0.79
PALB2-203ENST00000565038 PROX2Q3B8N5 592 aa10.1□□□□□ -0.79
PALB2-203ENST00000565038 ZBED2Q9BTP6 218 aa10.09□□□□□ -0.79
PALB2-203ENST00000565038 CERKQ8TCT0 537 aa10.08□□□□□ -0.8
PALB2-203ENST00000565038 CDCA7LQ96GN5 454 aa10.08□□□□□ -0.8
PALB2-203ENST00000565038 PRSS12P56730 875 aa10.07□□□□□ -0.8
PALB2-203ENST00000565038 PADI6Q6TGC4 694 aa10.07□□□□□ -0.8
PALB2-203ENST00000565038 ZC3H15Q8WU90 426 aaKnown RBP10.07□□□□□ -0.8
PALB2-203ENST00000565038 VPS9D1Q9Y2B5 631 aa10.07□□□□□ -0.8
PALB2-203ENST00000565038 FECHP22830 423 aa10.06□□□□□ -0.8
PALB2-203ENST00000565038 TRIM6-TRIM34B2RNG4 842 aa10.05□□□□□ -0.8
PALB2-203ENST00000565038 HIC1Q14526 733 aa10.05□□□□□ -0.8
PALB2-203ENST00000565038 ADGRD1Q6QNK2 874 aa10.05□□□□□ -0.8
PALB2-203ENST00000565038 FAM198AQ9UFP1 575 aa10.05□□□□□ -0.8
PALB2-203ENST00000565038 TSKSQ9UJT2 592 aa10.05□□□□□ -0.8
PALB2-203ENST00000565038 GNPATO15228 680 aa10.04□□□□□ -0.8
PALB2-203ENST00000565038 SLC4A5Q9BY07 1137 aa10.04□□□□□ -0.8
PALB2-203ENST00000565038 TK2O00142 265 aa10.03□□□□□ -0.8
PALB2-203ENST00000565038 KIAA1468Q9P260 1216 aa10.03□□□□□ -0.8
PALB2-203ENST00000565038 PCDH10Q9P2E7 1040 aa10.03□□□□□ -0.8
PALB2-203ENST00000565038 FAM161AQ3B820 660 aa10.01□□□□□ -0.81
PALB2-203ENST00000565038 TTC13Q8NBP0 860 aa10.01□□□□□ -0.81
PALB2-203ENST00000565038 C3orf80F5H4A9 247 aa10□□□□□ -0.81
PALB2-203ENST00000565038 ZMYND10O75800 440 aa10□□□□□ -0.81
PALB2-203ENST00000565038 TPRNQ4KMQ1 711 aa10□□□□□ -0.81
PALB2-203ENST00000565038 PACS2Q86VP3 889 aa10□□□□□ -0.81
PALB2-203ENST00000565038 RBM27Q9P2N5 1060 aaKnown RBP10□□□□□ -0.81
PALB2-203ENST00000565038 RABGEF1Q9UJ41 708 aa10□□□□□ -0.81
PALB2-203ENST00000565038 SMAPO00193 183 aa9.99□□□□□ -0.81
PALB2-203ENST00000565038 HRO43593 1189 aa9.98□□□□□ -0.81
PALB2-203ENST00000565038 ONECUT3O60422 494 aaPredicted RBP9.98□□□□□ -0.81
PALB2-203ENST00000565038 BARGINQ6ZT62 677 aa9.98□□□□□ -0.81
PALB2-203ENST00000565038 KRI1Q8N9T8 703 aaKnown RBP9.98□□□□□ -0.81
PALB2-203ENST00000565038 SEPT9Q9UHD8 586 aaPredicted RBP9.98□□□□□ -0.81
PALB2-203ENST00000565038 BHMG1C9JSJ3 638 aaPredicted RBP9.97□□□□□ -0.81
PALB2-203ENST00000565038 NUDT18Q6ZVK8 323 aa9.97□□□□□ -0.81
PALB2-203ENST00000565038 PNMA3Q9UL41 463 aa9.97□□□□□ -0.81
PALB2-203ENST00000565038 TATDN2Q93075 761 aa9.96□□□□□ -0.82
PALB2-203ENST00000565038 STAC3Q96MF2 364 aa9.96□□□□□ -0.82
PALB2-203ENST00000565038 ADGRG1Q9Y653 693 aa9.96□□□□□ -0.82
PALB2-203ENST00000565038 NBPF26B4DH59 902 aa9.95□□□□□ -0.82
PALB2-203ENST00000565038 PRKCSHP14314 528 aaPredicted RBP9.95□□□□□ -0.82
PALB2-203ENST00000565038 NBPF3Q9H094 633 aa9.95□□□□□ -0.82
PALB2-203ENST00000565038 MAP2K5Q13163 448 aa9.94□□□□□ -0.82
PALB2-203ENST00000565038 MRPL50Q8N5N7 158 aaKnown RBP9.94□□□□□ -0.82
PALB2-203ENST00000565038 MINK1Q8N4C8 1332 aaPredicted RBP9.93□□□□□ -0.82
PALB2-203ENST00000565038 IRF6O14896 467 aa9.93□□□□□ -0.82
PALB2-203ENST00000565038 EYA1Q99502 592 aa9.92□□□□□ -0.82
PALB2-203ENST00000565038 SLC24A3Q9HC58 644 aa9.92□□□□□ -0.82
PALB2-203ENST00000565038 SPNS2Q8IVW8 549 aa9.91□□□□□ -0.82
PALB2-203ENST00000565038 RBM46Q8TBY0 533 aaKnown RBP9.91□□□□□ -0.82
PALB2-203ENST00000565038 CCDC102AQ96A19 550 aa9.91□□□□□ -0.82
PALB2-203ENST00000565038 OATP04181 439 aa9.9□□□□□ -0.82
PALB2-203ENST00000565038 GOLGA8CPA6NN73 597 aa9.89□□□□□ -0.83
PALB2-203ENST00000565038 FAM98CQ17RN3 349 aaKnown RBP9.89□□□□□ -0.83
PALB2-203ENST00000565038 METTL3Q86U44 580 aaKnown RBP9.89□□□□□ -0.83
PALB2-203ENST00000565038 PXYLP1Q8TE99 480 aa9.89□□□□□ -0.83
PALB2-203ENST00000565038 NLRP7Q8WX94 980 aa9.89□□□□□ -0.83
PALB2-203ENST00000565038 LAPTM4BQ86VI4 370 aa9.88□□□□□ -0.83
PALB2-203ENST00000565038 PHOX2BQ99453 314 aa9.88□□□□□ -0.83
PALB2-203ENST00000565038 ZFRQ96KR1 1074 aaKnown RBP9.87□□□□□ -0.83
PALB2-203ENST00000565038 MYT1LQ9UL68 1186 aa9.87□□□□□ -0.83
PALB2-203ENST00000565038 RCCD1A6NED2 376 aa9.86□□□□□ -0.83
PALB2-203ENST00000565038 KCTD12Q96CX2 325 aaKnown RBP9.85□□□□□ -0.83
PALB2-203ENST00000565038 AK7Q96M32 723 aa9.85□□□□□ -0.83
PALB2-203ENST00000565038 WNT2BQ93097 391 aa9.84□□□□□ -0.83
PALB2-203ENST00000565038 TRIM66O15016 1216 aa9.83□□□□□ -0.84
PALB2-203ENST00000565038 DNAJB2P25686 324 aa9.83□□□□□ -0.84
PALB2-203ENST00000565038 SAMD7Q7Z3H4 446 aa9.83□□□□□ -0.84
PALB2-203ENST00000565038 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.82□□□□□ -0.84
PALB2-203ENST00000565038 SWT1Q5T5J6 900 aaKnown RBP9.82□□□□□ -0.84
PALB2-203ENST00000565038 ANKK1Q8NFD2 765 aa9.82□□□□□ -0.84
PALB2-203ENST00000565038 BCAMP50895 628 aa9.81□□□□□ -0.84
PALB2-203ENST00000565038 MDM2Q00987 491 aaPredicted RBP9.81□□□□□ -0.84
PALB2-203ENST00000565038 TMEM134Q9H6X4 195 aa9.81□□□□□ -0.84
PALB2-203ENST00000565038 HDGFP51858 240 aaKnown RBP9.8□□□□□ -0.84
PALB2-203ENST00000565038 MMRN1Q13201 1228 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms