RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 YTHDC1Q96MU7 727 aaKnown RBP10.22□□□□□ -0.77
HERPUD1-209ENST00000564678 CLASP1Q7Z460 1538 aa10.21□□□□□ -0.77
HERPUD1-209ENST00000564678 ANKRD50Q9ULJ7 1429 aa10.21□□□□□ -0.77
HERPUD1-209ENST00000564678 ARID3AQ99856 593 aa10.21□□□□□ -0.77
HERPUD1-209ENST00000564678 C9orf84Q5VXU9 1444 aa10.21□□□□□ -0.78
HERPUD1-209ENST00000564678 DDX10Q13206 875 aaKnown RBP10.21□□□□□ -0.78
HERPUD1-209ENST00000564678 UHRF1BP1LA0JNW5 1464 aa10.21□□□□□ -0.78
HERPUD1-209ENST00000564678 PZPP20742 1482 aa10.2□□□□□ -0.78
HERPUD1-209ENST00000564678 MBD5Q9P267 1494 aa10.2□□□□□ -0.78
HERPUD1-209ENST00000564678 DMRT2Q9Y5R5 561 aa10.2□□□□□ -0.78
HERPUD1-209ENST00000564678 PREX2Q70Z35 1606 aa10.2□□□□□ -0.78
HERPUD1-209ENST00000564678 L3MBTL2Q969R5 705 aa10.19□□□□□ -0.78
HERPUD1-209ENST00000564678 CDC42BPBQ9Y5S2 1711 aa10.19□□□□□ -0.78
HERPUD1-209ENST00000564678 KIAA1107Q9UPP5 1409 aa10.19□□□□□ -0.78
HERPUD1-209ENST00000564678 CCDC141Q6ZP82 1450 aa10.18□□□□□ -0.78
HERPUD1-209ENST00000564678 PLEKHH2Q8IVE3 1493 aa10.18□□□□□ -0.78
HERPUD1-209ENST00000564678 NEUROD2Q15784 382 aa10.18□□□□□ -0.78
HERPUD1-209ENST00000564678 LMOD2Q6P5Q4 547 aa10.18□□□□□ -0.78
HERPUD1-209ENST00000564678 HNRNPMP52272 730 aaKnown RBP eCLIP10.17□□□□□ -0.78
HERPUD1-209ENST00000564678 EIF4G2P78344 907 aaKnown RBP eCLIP10.17□□□□□ -0.78
HERPUD1-209ENST00000564678 KDM5DQ9BY66 1539 aa10.17□□□□□ -0.78
HERPUD1-209ENST00000564678 ERCC6L2Q5T890 1561 aa10.17□□□□□ -0.78
HERPUD1-209ENST00000564678 NKX1-1Q15270 411 aaPredicted RBP10.16□□□□□ -0.78
HERPUD1-209ENST00000564678 SAMD9LQ8IVG5 1584 aa10.16□□□□□ -0.78
HERPUD1-209ENST00000564678 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.16□□□□□ -0.78
HERPUD1-209ENST00000564678 TEX14Q8IWB6 1497 aa10.16□□□□□ -0.78
HERPUD1-209ENST00000564678 CCER2I3L3R5 266 aa10.16□□□□□ -0.78
HERPUD1-209ENST00000564678 MSH5O43196 834 aa10.16□□□□□ -0.78
HERPUD1-209ENST00000564678 MAST1Q9Y2H9 1570 aa10.16□□□□□ -0.78
HERPUD1-209ENST00000564678 KIF15Q9NS87 1388 aa10.15□□□□□ -0.78
HERPUD1-209ENST00000564678 NUP155O75694 1391 aa10.15□□□□□ -0.78
HERPUD1-209ENST00000564678 ANP32CO43423 234 aa10.15□□□□□ -0.79
HERPUD1-209ENST00000564678 SAMD1Q6SPF0 538 aaPredicted RBP10.15□□□□□ -0.79
HERPUD1-209ENST00000564678 HIRIP3Q9BW71 556 aaPredicted RBP10.15□□□□□ -0.79
HERPUD1-209ENST00000564678 HSPA5P11021 654 aaKnown RBP10.14□□□□□ -0.79
HERPUD1-209ENST00000564678 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.14□□□□□ -0.79
HERPUD1-209ENST00000564678 MYO5CQ9NQX4 1742 aa10.14□□□□□ -0.79
HERPUD1-209ENST00000564678 C1orf115Q9H7X2 142 aa10.14□□□□□ -0.79
HERPUD1-209ENST00000564678 ARHGAP5Q13017 1502 aa10.14□□□□□ -0.79
HERPUD1-209ENST00000564678 PLCH2O75038 1416 aa10.13□□□□□ -0.79
HERPUD1-209ENST00000564678 TTC37Q6PGP7 1564 aa10.13□□□□□ -0.79
HERPUD1-209ENST00000564678 HS6ST3Q8IZP7 471 aa10.13□□□□□ -0.79
HERPUD1-209ENST00000564678 ZCCHC11Q5TAX3 1644 aaKnown RBP10.12□□□□□ -0.79
HERPUD1-209ENST00000564678 EFCAB2Q5VUJ9 269 aa10.12□□□□□ -0.79
HERPUD1-209ENST00000564678 NBPF8Q3BBV2 869 aa10.11□□□□□ -0.79
HERPUD1-209ENST00000564678 ARAP3Q8WWN8 1544 aa10.11□□□□□ -0.79
HERPUD1-209ENST00000564678 SYCP2Q9BX26 1530 aa10.11□□□□□ -0.79
HERPUD1-209ENST00000564678 KCNH8Q96L42 1107 aa10.1□□□□□ -0.79
HERPUD1-209ENST00000564678 PLXNC1O60486 1568 aa10.1□□□□□ -0.79
HERPUD1-209ENST00000564678 WASHC2AQ641Q2 1341 aa10.09□□□□□ -0.79
HERPUD1-209ENST00000564678 SPATA31E1Q6ZUB1 1445 aa10.09□□□□□ -0.79
HERPUD1-209ENST00000564678 GTPBP6O43824 516 aaPredicted RBP10.09□□□□□ -0.79
HERPUD1-209ENST00000564678 PELP1Q8IZL8 1130 aaKnown RBP10.09□□□□□ -0.79
HERPUD1-209ENST00000564678 UHRF1BP1Q6BDS2 1440 aa10.09□□□□□ -0.79
HERPUD1-209ENST00000564678 ZMYND15Q9H091 742 aa10.08□□□□□ -0.8
HERPUD1-209ENST00000564678 ARHGEF12Q9NZN5 1544 aa10.08□□□□□ -0.8
HERPUD1-209ENST00000564678 DUOX2Q9NRD8 1548 aa10.07□□□□□ -0.8
HERPUD1-209ENST00000564678 FAM135AQ9P2D6 1515 aa10.07□□□□□ -0.8
HERPUD1-209ENST00000564678 U3KPZ7 1027 aaPredicted RBP10.07□□□□□ -0.8
HERPUD1-209ENST00000564678 UNC13BO14795 1591 aa10.07□□□□□ -0.8
HERPUD1-209ENST00000564678 RTEL1-TNFRSF6BF6WH68 1400 aa10.06□□□□□ -0.8
HERPUD1-209ENST00000564678 ERBINQ96RT1 1412 aa10.06□□□□□ -0.8
HERPUD1-209ENST00000564678 NECTIN2Q92692 538 aa10.06□□□□□ -0.8
HERPUD1-209ENST00000564678 ARID4BQ4LE39 1312 aaPredicted RBP10.06□□□□□ -0.8
HERPUD1-209ENST00000564678 CCDC7Q96M83 1385 aa10.06□□□□□ -0.8
HERPUD1-209ENST00000564678 ABCC1P33527 1531 aa10.05□□□□□ -0.8
HERPUD1-209ENST00000564678 WDR7Q9Y4E6 1490 aa10.05□□□□□ -0.8
HERPUD1-209ENST00000564678 POLR1AO95602 1720 aaPredicted RBP10.05□□□□□ -0.8
HERPUD1-209ENST00000564678 RSPH6AQ9H0K4 717 aa10.05□□□□□ -0.8
HERPUD1-209ENST00000564678 SLC24A3Q9HC58 644 aa10.05□□□□□ -0.8
HERPUD1-209ENST00000564678 CIZ1Q9ULV3 898 aaPredicted RBP10.05□□□□□ -0.8
HERPUD1-209ENST00000564678 CCDC9Q9Y3X0 531 aaKnown RBP10.04□□□□□ -0.8
HERPUD1-209ENST00000564678 CNTLNQ9NXG0 1405 aa10.04□□□□□ -0.8
HERPUD1-209ENST00000564678 OSCARQ8IYS5 282 aa10.04□□□□□ -0.8
HERPUD1-209ENST00000564678 RNF25Q96BH1 459 aaPredicted RBP10.04□□□□□ -0.8
HERPUD1-209ENST00000564678 IQGAP3Q86VI3 1631 aa10.03□□□□□ -0.8
HERPUD1-209ENST00000564678 ATP10AO60312 1499 aa10.03□□□□□ -0.8
HERPUD1-209ENST00000564678 MAGI2Q86UL8 1455 aa10.03□□□□□ -0.8
HERPUD1-209ENST00000564678 RALGAPBQ86X10 1494 aa10.03□□□□□ -0.8
HERPUD1-209ENST00000564678 C11orf95C9JLR9 678 aaPredicted RBP10.02□□□□□ -0.81
HERPUD1-209ENST00000564678 CCDC144AA2RUR9 1427 aa10.02□□□□□ -0.81
HERPUD1-209ENST00000564678 ABCA9Q8IUA7 1624 aa10.01□□□□□ -0.81
HERPUD1-209ENST00000564678 TRAPPC8Q9Y2L5 1435 aa10.01□□□□□ -0.81
HERPUD1-209ENST00000564678 USP47Q96K76 1375 aa10.01□□□□□ -0.81
HERPUD1-209ENST00000564678 SPAG9O60271 1321 aaKnown RBP10.01□□□□□ -0.81
HERPUD1-209ENST00000564678 KIF7Q2M1P5 1343 aa10□□□□□ -0.81
HERPUD1-209ENST00000564678 KCNV2Q8TDN2 545 aa9.99□□□□□ -0.81
HERPUD1-209ENST00000564678 ZC3H15Q8WU90 426 aaKnown RBP9.99□□□□□ -0.81
HERPUD1-209ENST00000564678 KDM5CP41229 1560 aa9.99□□□□□ -0.81
HERPUD1-209ENST00000564678 DCAF11Q8TEB1 546 aa9.99□□□□□ -0.81
HERPUD1-209ENST00000564678 FANCAO15360 1455 aa9.99□□□□□ -0.81
HERPUD1-209ENST00000564678 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.98□□□□□ -0.814e-6■□□□□ 11.1
HERPUD1-209ENST00000564678 CARD11Q9BXL7 1154 aa9.98□□□□□ -0.81
HERPUD1-209ENST00000564678 PRKRIP1Q9H875 184 aaPredicted RBP9.98□□□□□ -0.81
HERPUD1-209ENST00000564678 PLA2R1Q13018 1463 aa9.98□□□□□ -0.81
HERPUD1-209ENST00000564678 ROCK2O75116 1388 aaKnown RBP9.98□□□□□ -0.81
HERPUD1-209ENST00000564678 ZNF326Q5BKZ1 582 aaKnown RBP9.98□□□□□ -0.81
HERPUD1-209ENST00000564678 STAC3Q96MF2 364 aa9.98□□□□□ -0.81
HERPUD1-209ENST00000564678 ASXL2Q76L83 1435 aa9.98□□□□□ -0.81
HERPUD1-209ENST00000564678 AFAP1Q8N556 730 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms