RNA–Protein interactions for RNA: ENST00000564068.1

COMMD4-209, Transcript of COMM domain containing 4, humanhuman

Gene COMMD4, Length 4,204 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-209ENST00000564068 PNISRQ8TF01 805 aaKnown RBP16.02■□□□□ 0.16
COMMD4-209ENST00000564068 BCL2L13Q9BXK5 485 aa16.02■□□□□ 0.15
COMMD4-209ENST00000564068 RWDD1Q9H446 243 aaPredicted RBP16.02■□□□□ 0.15
COMMD4-209ENST00000564068 COG6Q9Y2V7 657 aa16.02■□□□□ 0.15
COMMD4-209ENST00000564068 HNRNPMP52272 730 aaKnown RBP eCLIP16■□□□□ 0.15
COMMD4-209ENST00000564068 MAPK8IP3Q9UPT6 1336 aa15.99■□□□□ 0.15
COMMD4-209ENST00000564068 MORC1Q86VD1 984 aa15.99■□□□□ 0.15
COMMD4-209ENST00000564068 GBP4Q96PP9 640 aa15.99■□□□□ 0.15
COMMD4-209ENST00000564068 IFT140Q96RY7 1462 aa15.99■□□□□ 0.15
COMMD4-209ENST00000564068 POLA1P09884 1462 aaPredicted RBP15.98■□□□□ 0.15
COMMD4-209ENST00000564068 CENPJQ9HC77 1338 aaPredicted RBP15.98■□□□□ 0.15
COMMD4-209ENST00000564068 PTPRGP23470 1445 aa15.98■□□□□ 0.15
COMMD4-209ENST00000564068 APAF1O14727 1248 aa15.98■□□□□ 0.15
COMMD4-209ENST00000564068 ZNF644Q9H582 1327 aaPredicted RBP15.98■□□□□ 0.15
COMMD4-209ENST00000564068 ERICH3Q5RHP9 1530 aa15.98■□□□□ 0.15
COMMD4-209ENST00000564068 RRP7AQ9Y3A4 280 aaKnown RBP15.97■□□□□ 0.15
COMMD4-209ENST00000564068 PMFBP1Q8TBY8 1022 aa15.97■□□□□ 0.15
COMMD4-209ENST00000564068 SMG6Q86US8 1419 aaKnown RBP15.96■□□□□ 0.15
COMMD4-209ENST00000564068 ITPRIPQ8IWB1 547 aa15.96■□□□□ 0.15
COMMD4-209ENST00000564068 GRIN2BQ13224 1484 aa15.96■□□□□ 0.14
COMMD4-209ENST00000564068 FAM69CQ0P6D2 419 aa15.95■□□□□ 0.14
COMMD4-209ENST00000564068 ANKRD30AQ9BXX3 1397 aa15.94■□□□□ 0.14
COMMD4-209ENST00000564068 U2AF1L5P0DN76 240 aaPredicted RBP15.93■□□□□ 0.14
COMMD4-209ENST00000564068 U2AF1Q01081 240 aaKnown RBP eCLIP15.93■□□□□ 0.14
COMMD4-209ENST00000564068 MYOM3Q5VTT5 1437 aa15.92■□□□□ 0.14
COMMD4-209ENST00000564068 ADAMTS8Q9UP79 889 aa15.92■□□□□ 0.14
COMMD4-209ENST00000564068 APBB1O00213 710 aa15.91■□□□□ 0.14
COMMD4-209ENST00000564068 CASC1Q6TDU7 716 aa15.9■□□□□ 0.14
COMMD4-209ENST00000564068 SMC4Q9NTJ3 1288 aa15.89■□□□□ 0.14
COMMD4-209ENST00000564068 BRD4O60885 1362 aaPredicted RBP15.89■□□□□ 0.13
COMMD4-209ENST00000564068 CGNL1Q0VF96 1302 aa15.88■□□□□ 0.13
COMMD4-209ENST00000564068 SAFB2Q14151 953 aaKnown RBP eCLIP15.88■□□□□ 0.13
COMMD4-209ENST00000564068 SNAPC4Q5SXM2 1469 aa15.88■□□□□ 0.13
COMMD4-209ENST00000564068 PANK1Q8TE04 598 aa15.88■□□□□ 0.13
COMMD4-209ENST00000564068 ZNF608Q9ULD9 1512 aaPredicted RBP15.88■□□□□ 0.13
COMMD4-209ENST00000564068 URB2Q14146 1524 aaKnown RBP15.87■□□□□ 0.13
COMMD4-209ENST00000564068 PEG3Q9GZU2 1588 aa15.87■□□□□ 0.13
COMMD4-209ENST00000564068 FAM43AQ8N2R8 423 aa15.87■□□□□ 0.13
COMMD4-209ENST00000564068 E9PSI1 815 aa15.86■□□□□ 0.13
COMMD4-209ENST00000564068 HFM1A2PYH4 1435 aa15.86■□□□□ 0.13
COMMD4-209ENST00000564068 DDX11L8A8MPP1 907 aa15.86■□□□□ 0.13
COMMD4-209ENST00000564068 CALD1Q05682 793 aaKnown RBP15.86■□□□□ 0.13
COMMD4-209ENST00000564068 CASKIN1Q8WXD9 1431 aa15.85■□□□□ 0.13
COMMD4-209ENST00000564068 NCOA2Q15596 1464 aa15.85■□□□□ 0.13
COMMD4-209ENST00000564068 POGKQ9P215 609 aa15.85■□□□□ 0.13
COMMD4-209ENST00000564068 DDX49Q9Y6V7 483 aaKnown RBP15.85■□□□□ 0.13
COMMD4-209ENST00000564068 CHMP5Q9NZZ3 219 aa15.84■□□□□ 0.13
COMMD4-209ENST00000564068 EFCAB2Q5VUJ9 269 aa15.84■□□□□ 0.13
COMMD4-209ENST00000564068 MAPKBP1O60336 1514 aa15.84■□□□□ 0.13
COMMD4-209ENST00000564068 C20orf194Q5TEA3 1177 aa15.83■□□□□ 0.13
COMMD4-209ENST00000564068 GGT6Q6P531 493 aa15.83■□□□□ 0.12
COMMD4-209ENST00000564068 DNMBPQ6XZF7 1577 aa15.83■□□□□ 0.12
COMMD4-209ENST00000564068 IPO8O15397 1037 aaKnown RBP15.83■□□□□ 0.12
COMMD4-209ENST00000564068 TIAM1Q13009 1591 aa15.82■□□□□ 0.12
COMMD4-209ENST00000564068 PRG4Q92954 1404 aaPredicted RBP15.82■□□□□ 0.12
COMMD4-209ENST00000564068 FOXD4L5Q5VV16 416 aaPredicted RBP15.82■□□□□ 0.12
COMMD4-209ENST00000564068 FOXD4L4Q8WXT5 416 aaPredicted RBP15.82■□□□□ 0.12
COMMD4-209ENST00000564068 NAIPQ13075 1403 aa15.81■□□□□ 0.12
COMMD4-209ENST00000564068 AMER1Q5JTC6 1135 aaPredicted RBP15.81■□□□□ 0.12
COMMD4-209ENST00000564068 BCAR3O75815 825 aa15.81■□□□□ 0.12
COMMD4-209ENST00000564068 FAM13BQ9NYF5 915 aa15.81■□□□□ 0.12
COMMD4-209ENST00000564068 CHMP4BQ9H444 224 aaKnown RBP15.81■□□□□ 0.12
COMMD4-209ENST00000564068 PKNOX2Q96KN3 472 aa15.8■□□□□ 0.12
COMMD4-209ENST00000564068 TRAK2O60296 914 aa15.8■□□□□ 0.12
COMMD4-209ENST00000564068 NBPF1Q3BBV0 1214 aa15.79■□□□□ 0.12
COMMD4-209ENST00000564068 PTMSP20962 102 aa15.79■□□□□ 0.12
COMMD4-209ENST00000564068 C22orf23Q9BZE7 217 aa15.79■□□□□ 0.12
COMMD4-209ENST00000564068 CCDC144AA2RUR9 1427 aa15.77■□□□□ 0.12
COMMD4-209ENST00000564068 MRE11P49959 708 aa15.77■□□□□ 0.12
COMMD4-209ENST00000564068 SRPK2P78362 688 aaKnown RBP15.77■□□□□ 0.11
COMMD4-209ENST00000564068 KIF3BO15066 747 aa15.76■□□□□ 0.11
COMMD4-209ENST00000564068 KIAA2012Q0VF49 1180 aa15.76■□□□□ 0.11
COMMD4-209ENST00000564068 NOL8Q76FK4 1167 aaKnown RBP15.76■□□□□ 0.11
COMMD4-209ENST00000564068 ZKSCAN2Q63HK3 967 aa15.76■□□□□ 0.11
COMMD4-209ENST00000564068 FYCO1Q9BQS8 1478 aa15.75■□□□□ 0.11
COMMD4-209ENST00000564068 ANKRD45Q5TZF3 282 aa15.75■□□□□ 0.11
COMMD4-209ENST00000564068 CHAF1AQ13111 956 aaPredicted RBP15.75■□□□□ 0.11
COMMD4-209ENST00000564068 AEBP2Q6ZN18 517 aaPredicted RBP15.75■□□□□ 0.11
COMMD4-209ENST00000564068 FOXD4L6Q3SYB3 417 aaPredicted RBP15.74■□□□□ 0.11
COMMD4-209ENST00000564068 FOXD4L3Q6VB84 417 aaPredicted RBP15.74■□□□□ 0.11
COMMD4-209ENST00000564068 ELL2O00472 640 aaPredicted RBP15.74■□□□□ 0.11
COMMD4-209ENST00000564068 SKOR2Q2VWA4 1001 aaPredicted RBP15.73■□□□□ 0.11
COMMD4-209ENST00000564068 LNPKQ9C0E8 428 aa15.73■□□□□ 0.11
COMMD4-209ENST00000564068 STK26Q9P289 416 aa15.73■□□□□ 0.11
COMMD4-209ENST00000564068 NCOA1Q15788 1441 aa15.72■□□□□ 0.11
COMMD4-209ENST00000564068 PDZRN3Q9UPQ7 1066 aa15.72■□□□□ 0.11
COMMD4-209ENST00000564068 SPAG9O60271 1321 aaKnown RBP15.72■□□□□ 0.11
COMMD4-209ENST00000564068 PPP2R1AP30153 589 aa15.71■□□□□ 0.11
COMMD4-209ENST00000564068 DZIP1LQ8IYY4 767 aaKnown RBP15.71■□□□□ 0.11
COMMD4-209ENST00000564068 RSPH4AQ5TD94 716 aa15.7■□□□□ 0.1
COMMD4-209ENST00000564068 TRAK1Q9UPV9 953 aa15.7■□□□□ 0.1
COMMD4-209ENST00000564068 KANK1Q14678 1352 aa15.7■□□□□ 0.1
COMMD4-209ENST00000564068 ABCA10Q8WWZ4 1543 aa15.7■□□□□ 0.1
COMMD4-209ENST00000564068 CDK11BP21127 795 aaKnown RBP15.7■□□□□ 0.1
COMMD4-209ENST00000564068 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.69■□□□□ 0.1
COMMD4-209ENST00000564068 MCM4P33991 863 aa15.69■□□□□ 0.1
COMMD4-209ENST00000564068 DRC7Q8IY82 874 aa15.69■□□□□ 0.1
COMMD4-209ENST00000564068 UBE2Q2Q8WVN8 375 aa15.69■□□□□ 0.1
COMMD4-209ENST00000564068 R3HCC1Q9Y3T6 440 aaKnown RBP15.68■□□□□ 0.1
COMMD4-209ENST00000564068 PRDM2Q13029 1718 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms