RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 NPM2Q86SE8 214 aaKnown RBP17.68■□□□□ 0.42
CLN3-210ENST00000563874 JPH4Q96JJ6 628 aa17.68■□□□□ 0.42
CLN3-210ENST00000563874 RGL3Q3MIN7 710 aa17.67■□□□□ 0.42
CLN3-210ENST00000563874 RALBP1Q15311 655 aa17.67■□□□□ 0.42
CLN3-210ENST00000563874 MYT1LQ9UL68 1186 aa17.67■□□□□ 0.42
CLN3-210ENST00000563874 BRD4O60885 1362 aaPredicted RBP17.67■□□□□ 0.42
CLN3-210ENST00000563874 CROCC2H7BZ55 1655 aa17.66■□□□□ 0.42
CLN3-210ENST00000563874 ZBTB47Q9UFB7 747 aaPredicted RBP17.66■□□□□ 0.42
CLN3-210ENST00000563874 EIF4G3O43432 1585 aaKnown RBP17.65■□□□□ 0.42
CLN3-210ENST00000563874 RCAN3Q9UKA8 241 aa17.65■□□□□ 0.42
CLN3-210ENST00000563874 NBPF1Q3BBV0 1214 aa17.63■□□□□ 0.41
CLN3-210ENST00000563874 CDCA7LQ96GN5 454 aa17.63■□□□□ 0.41
CLN3-210ENST00000563874 CEP170Q5SW79 1584 aa17.63■□□□□ 0.41
CLN3-210ENST00000563874 CARMIL2Q6F5E8 1435 aa17.62■□□□□ 0.41
CLN3-210ENST00000563874 ARHGEF12Q9NZN5 1544 aa17.61■□□□□ 0.41
CLN3-210ENST00000563874 CC2D1BQ5T0F9 858 aaKnown RBP17.61■□□□□ 0.41
CLN3-210ENST00000563874 NLRP13Q86W25 1043 aa17.61■□□□□ 0.41
CLN3-210ENST00000563874 ADCY10Q96PN6 1610 aa17.61■□□□□ 0.41
CLN3-210ENST00000563874 KTN1Q86UP2 1357 aaKnown RBP17.6■□□□□ 0.41
CLN3-210ENST00000563874 PLIN1O60240 522 aa17.6■□□□□ 0.41
CLN3-210ENST00000563874 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.6■□□□□ 0.41
CLN3-210ENST00000563874 MAGI1Q96QZ7 1491 aaPredicted RBP17.59■□□□□ 0.41
CLN3-210ENST00000563874 CDC42BPAQ5VT25 1732 aa17.59■□□□□ 0.41
CLN3-210ENST00000563874 ATP10BO94823 1461 aa17.58■□□□□ 0.4
CLN3-210ENST00000563874 ABCC10Q5T3U5 1492 aa17.58■□□□□ 0.4
CLN3-210ENST00000563874 SKAP1Q86WV1 359 aa17.57■□□□□ 0.4
CLN3-210ENST00000563874 RTL5Q5HYW3 569 aaPredicted RBP17.56■□□□□ 0.4
CLN3-210ENST00000563874 SYNJ2O15056 1496 aa17.56■□□□□ 0.4
CLN3-210ENST00000563874 SHANK2Q9UPX8 1470 aa17.56■□□□□ 0.4
CLN3-210ENST00000563874 PER1O15534 1290 aaPredicted RBP17.56■□□□□ 0.4
CLN3-210ENST00000563874 PARD3Q8TEW0 1356 aa17.56■□□□□ 0.4
CLN3-210ENST00000563874 PDE4AP27815 886 aa17.55■□□□□ 0.4
CLN3-210ENST00000563874 CCDC144AA2RUR9 1427 aa17.54■□□□□ 0.4
CLN3-210ENST00000563874 PTPRGP23470 1445 aa17.54■□□□□ 0.4
CLN3-210ENST00000563874 TCERG1O14776 1098 aaKnown RBP17.53■□□□□ 0.4
CLN3-210ENST00000563874 PRAG1Q86YV5 1406 aa17.53■□□□□ 0.4
CLN3-210ENST00000563874 KDM5DQ9BY66 1539 aa17.53■□□□□ 0.4
CLN3-210ENST00000563874 PANK3Q9H999 370 aa17.52■□□□□ 0.4
CLN3-210ENST00000563874 DISP3Q9P2K9 1392 aa17.52■□□□□ 0.4
CLN3-210ENST00000563874 PLEKHG5O94827 1062 aa17.52■□□□□ 0.39
CLN3-210ENST00000563874 LAS1LQ9Y4W2 734 aaKnown RBP17.52■□□□□ 0.39
CLN3-210ENST00000563874 FAM135AQ9P2D6 1515 aa17.52■□□□□ 0.39
CLN3-210ENST00000563874 PDE3BQ13370 1112 aa17.51■□□□□ 0.39
CLN3-210ENST00000563874 E9PCH4 1651 aa17.51■□□□□ 0.39
CLN3-210ENST00000563874 ABCA8O94911 1581 aa17.5■□□□□ 0.39
CLN3-210ENST00000563874 TESK2Q96S53 571 aa17.49■□□□□ 0.39
CLN3-210ENST00000563874 CRBNQ96SW2 442 aa17.49■□□□□ 0.39
CLN3-210ENST00000563874 BACH2Q9BYV9 841 aa17.49■□□□□ 0.39
CLN3-210ENST00000563874 NUP160Q12769 1436 aa17.49■□□□□ 0.39
CLN3-210ENST00000563874 CCDC141Q6ZP82 1450 aa17.47■□□□□ 0.39
CLN3-210ENST00000563874 PLA2R1Q13018 1463 aa17.46■□□□□ 0.39
CLN3-210ENST00000563874 TRPM1Q7Z4N2 1603 aa17.46■□□□□ 0.39
CLN3-210ENST00000563874 C20orf194Q5TEA3 1177 aa17.46■□□□□ 0.38
CLN3-210ENST00000563874 A2MP01023 1474 aa17.45■□□□□ 0.38
CLN3-210ENST00000563874 COL17A1Q9UMD9 1497 aaPredicted RBP17.44■□□□□ 0.38
CLN3-210ENST00000563874 ADAMTS8Q9UP79 889 aa17.44■□□□□ 0.38
CLN3-210ENST00000563874 SAMD9LQ8IVG5 1584 aa17.43■□□□□ 0.38
CLN3-210ENST00000563874 NEFMP07197 916 aa17.43■□□□□ 0.38
CLN3-210ENST00000563874 TMF1P82094 1093 aa17.43■□□□□ 0.38
CLN3-210ENST00000563874 ARHGEF5Q12774 1597 aa17.42■□□□□ 0.38
CLN3-210ENST00000563874 MS4A1P11836 297 aa17.42■□□□□ 0.38
CLN3-210ENST00000563874 ERBINQ96RT1 1412 aa17.42■□□□□ 0.38
CLN3-210ENST00000563874 GPRASP1Q5JY77 1395 aa17.42■□□□□ 0.38
CLN3-210ENST00000563874 ANO8Q9HCE9 1232 aaPredicted RBP17.4■□□□□ 0.38
CLN3-210ENST00000563874 BLMP54132 1417 aaPredicted RBP17.4■□□□□ 0.38
CLN3-210ENST00000563874 SYCP2Q9BX26 1530 aa17.4■□□□□ 0.38
CLN3-210ENST00000563874 WASHC2CQ9Y4E1 1318 aa17.39■□□□□ 0.37
CLN3-210ENST00000563874 PLEKHH2Q8IVE3 1493 aa17.39■□□□□ 0.37
CLN3-210ENST00000563874 RSPH4AQ5TD94 716 aa17.39■□□□□ 0.37
CLN3-210ENST00000563874 CDC42BPBQ9Y5S2 1711 aa17.37■□□□□ 0.37
CLN3-210ENST00000563874 PRDM15P57071 1507 aaPredicted RBP17.36■□□□□ 0.37
CLN3-210ENST00000563874 ARHGAP5Q13017 1502 aa17.36■□□□□ 0.37
CLN3-210ENST00000563874 KNSTRNQ9Y448 316 aa17.36■□□□□ 0.37
CLN3-210ENST00000563874 SLC4A3P48751 1232 aa17.35■□□□□ 0.37
CLN3-210ENST00000563874 WDR43Q15061 677 aaKnown RBP eCLIP17.35■□□□□ 0.37
CLN3-210ENST00000563874 PLEKHH1Q9ULM0 1364 aa17.34■□□□□ 0.37
CLN3-210ENST00000563874 PPP2R1AP30153 589 aa17.34■□□□□ 0.37
CLN3-210ENST00000563874 PREX2Q70Z35 1606 aa17.33■□□□□ 0.37
CLN3-210ENST00000563874 DUSP27Q5VZP5 1158 aa17.32■□□□□ 0.36
CLN3-210ENST00000563874 IL27Q8NEV9 243 aa17.32■□□□□ 0.36
CLN3-210ENST00000563874 ZMYM4Q5VZL5 1548 aa17.32■□□□□ 0.36
CLN3-210ENST00000563874 MAGI2Q86UL8 1455 aa17.32■□□□□ 0.36
CLN3-210ENST00000563874 CCDC146Q8IYE0 955 aa17.31■□□□□ 0.36
CLN3-210ENST00000563874 TTC37Q6PGP7 1564 aa17.3■□□□□ 0.36
CLN3-210ENST00000563874 RTN4Q9NQC3 1192 aaKnown RBP17.3■□□□□ 0.36
CLN3-210ENST00000563874 UNC13BO14795 1591 aa17.3■□□□□ 0.36
CLN3-210ENST00000563874 KDM2BQ8NHM5 1336 aa17.29■□□□□ 0.36
CLN3-210ENST00000563874 MYO5CQ9NQX4 1742 aa17.29■□□□□ 0.36
CLN3-210ENST00000563874 GOLGA2Q08379 1002 aa17.29■□□□□ 0.36
CLN3-210ENST00000563874 AMER1Q5JTC6 1135 aaPredicted RBP17.29■□□□□ 0.36
CLN3-210ENST00000563874 INSRP06213 1382 aa17.28■□□□□ 0.36
CLN3-210ENST00000563874 PPM1GO15355 546 aaPredicted RBP17.28■□□□□ 0.36
CLN3-210ENST00000563874 WDR7Q9Y4E6 1490 aa17.28■□□□□ 0.36
CLN3-210ENST00000563874 RGS3P49796 1198 aa17.28■□□□□ 0.36
CLN3-210ENST00000563874 DDRGK1Q96HY6 314 aa17.27■□□□□ 0.36
CLN3-210ENST00000563874 USP35Q9P2H5 1018 aa17.27■□□□□ 0.35
CLN3-210ENST00000563874 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.26■□□□□ 0.35
CLN3-210ENST00000563874 CENPQQ7L2Z9 268 aaPredicted RBP17.26■□□□□ 0.35
CLN3-210ENST00000563874 LAMC1P11047 1609 aa17.26■□□□□ 0.35
CLN3-210ENST00000563874 EIF2AK4Q9P2K8 1649 aaKnown RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms