RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 PRDM15P57071 1507 aaPredicted RBP20.52■□□□□ 0.87
CLK3-209ENST00000562670 ARHGEF40Q8TER5 1519 aa20.51■□□□□ 0.87
CLK3-209ENST00000562670 COL17A1Q9UMD9 1497 aaPredicted RBP20.5■□□□□ 0.87
CLK3-209ENST00000562670 VWDEQ8N2E2 1590 aa20.49■□□□□ 0.87
CLK3-209ENST00000562670 FAM135AQ9P2D6 1515 aa20.48■□□□□ 0.87
CLK3-209ENST00000562670 MROH1Q8NDA8 1641 aa20.47■□□□□ 0.87
CLK3-209ENST00000562670 TRIM52Q96A61 297 aa20.47■□□□□ 0.87
CLK3-209ENST00000562670 YEATS2Q9ULM3 1422 aa20.46■□□□□ 0.87
CLK3-209ENST00000562670 NUP155O75694 1391 aa20.46■□□□□ 0.87
CLK3-209ENST00000562670 MPHOSPH9Q99550 1183 aa20.45■□□□□ 0.86
CLK3-209ENST00000562670 ATP10AO60312 1499 aa20.44■□□□□ 0.86
CLK3-209ENST00000562670 AGLP35573 1532 aa20.44■□□□□ 0.86
CLK3-209ENST00000562670 MYT1LQ9UL68 1186 aa20.43■□□□□ 0.86
CLK3-209ENST00000562670 TRHP20396 242 aaPredicted RBP20.42■□□□□ 0.86
CLK3-209ENST00000562670 LMTK2Q8IWU2 1503 aa20.42■□□□□ 0.86
CLK3-209ENST00000562670 SLC4A1APQ9BWU0 796 aaKnown RBP20.41■□□□□ 0.86
CLK3-209ENST00000562670 TET3O43151 1660 aa20.4■□□□□ 0.86
CLK3-209ENST00000562670 KANK1Q14678 1352 aa20.38■□□□□ 0.85
CLK3-209ENST00000562670 ANKRD30BQ9BXX2 1392 aa20.38■□□□□ 0.85
CLK3-209ENST00000562670 ZC3H13Q5T200 1668 aaKnown RBP20.37■□□□□ 0.85
CLK3-209ENST00000562670 KIF3BO15066 747 aa20.35■□□□□ 0.85
CLK3-209ENST00000562670 EFCAB6Q5THR3 1501 aa20.34■□□□□ 0.85
CLK3-209ENST00000562670 TIMELESSQ9UNS1 1208 aa20.34■□□□□ 0.85
CLK3-209ENST00000562670 PKD2Q13563 968 aa20.32■□□□□ 0.84
CLK3-209ENST00000562670 ABCC3O15438 1527 aa20.32■□□□□ 0.84
CLK3-209ENST00000562670 RPRD2Q5VT52 1461 aaKnown RBP20.31■□□□□ 0.84
CLK3-209ENST00000562670 E9PCH4 1651 aa20.3■□□□□ 0.84
CLK3-209ENST00000562670 SIGLEC1Q9BZZ2 1709 aa20.29■□□□□ 0.84
CLK3-209ENST00000562670 CEP152O94986 1710 aa20.28■□□□□ 0.84
CLK3-209ENST00000562670 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.27■□□□□ 0.843e-9■■■■■ 27.4
CLK3-209ENST00000562670 PPP6R1Q9UPN7 881 aa20.27■□□□□ 0.84
CLK3-209ENST00000562670 TRPM2O94759 1503 aa20.27■□□□□ 0.83
CLK3-209ENST00000562670 CAMSAP1Q5T5Y3 1602 aa20.26■□□□□ 0.83
CLK3-209ENST00000562670 PTPRTO14522 1441 aa20.26■□□□□ 0.83
CLK3-209ENST00000562670 ARHGAP31Q2M1Z3 1444 aa20.25■□□□□ 0.83
CLK3-209ENST00000562670 SPHKAPQ2M3C7 1700 aa20.24■□□□□ 0.83
CLK3-209ENST00000562670 PLA2R1Q13018 1463 aa20.24■□□□□ 0.83
CLK3-209ENST00000562670 FOXD1Q16676 465 aa20.23■□□□□ 0.83
CLK3-209ENST00000562670 SIN3AQ96ST3 1273 aa20.22■□□□□ 0.83
CLK3-209ENST00000562670 NEURL4Q96JN8 1562 aa20.2■□□□□ 0.82
CLK3-209ENST00000562670 TONSLQ96HA7 1378 aa20.2■□□□□ 0.82
CLK3-209ENST00000562670 CCDC144AA2RUR9 1427 aa20.19■□□□□ 0.82
CLK3-209ENST00000562670 NPATQ14207 1427 aa20.19■□□□□ 0.82
CLK3-209ENST00000562670 GGT6Q6P531 493 aa20.19■□□□□ 0.82
CLK3-209ENST00000562670 WASHC2CQ9Y4E1 1318 aa20.17■□□□□ 0.82
CLK3-209ENST00000562670 CNTLNQ9NXG0 1405 aa20.17■□□□□ 0.82
CLK3-209ENST00000562670 NEUROD1Q13562 356 aa20.15■□□□□ 0.82
CLK3-209ENST00000562670 NOS1P29475 1434 aa20.14■□□□□ 0.81
CLK3-209ENST00000562670 MROH2AA6NES4 1674 aa20.13■□□□□ 0.81
CLK3-209ENST00000562670 CLTCL1P53675 1640 aa20.13■□□□□ 0.81
CLK3-209ENST00000562670 CLTCQ00610 1675 aaKnown RBP20.12■□□□□ 0.81
CLK3-209ENST00000562670 PIK3C2BO00750 1634 aa20.1■□□□□ 0.81
CLK3-209ENST00000562670 PREX1Q8TCU6 1659 aa20.1■□□□□ 0.81
CLK3-209ENST00000562670 SPATA31E1Q6ZUB1 1445 aa20.09■□□□□ 0.81
CLK3-209ENST00000562670 SYNMO15061 1565 aa20.08■□□□□ 0.8
CLK3-209ENST00000562670 SPATA31D1Q6ZQQ2 1576 aa20.08■□□□□ 0.8
CLK3-209ENST00000562670 PPP1R15AO75807 674 aaPredicted RBP20.07■□□□□ 0.8
CLK3-209ENST00000562670 ERVK-7P63135 1459 aa20.06■□□□□ 0.8
CLK3-209ENST00000562670 ADGRB3O60242 1522 aa20.05■□□□□ 0.8
CLK3-209ENST00000562670 L3MBTL2Q969R5 705 aa20.04■□□□□ 0.8
CLK3-209ENST00000562670 UHRF1BP1Q6BDS2 1440 aa20.03■□□□□ 0.8
CLK3-209ENST00000562670 KIF1BO60333 1816 aa20.03■□□□□ 0.8
CLK3-209ENST00000562670 ARID4BQ4LE39 1312 aaPredicted RBP20.02■□□□□ 0.8
CLK3-209ENST00000562670 UGGT1Q9NYU2 1555 aa20.02■□□□□ 0.8
CLK3-209ENST00000562670 FER1L4A9Z1Z3 1794 aa20.02■□□□□ 0.8
CLK3-209ENST00000562670 STAC3Q96MF2 364 aa19.99■□□□□ 0.79
CLK3-209ENST00000562670 ZMYM3Q14202 1370 aa19.98■□□□□ 0.79
CLK3-209ENST00000562670 ESF1Q9H501 851 aaKnown RBP19.98■□□□□ 0.79
CLK3-209ENST00000562670 SLC52A1Q9NWF4 448 aa19.98■□□□□ 0.79
CLK3-209ENST00000562670 ADAMTSL3P82987 1691 aa19.97■□□□□ 0.79
CLK3-209ENST00000562670 MLECQ14165 292 aa19.97■□□□□ 0.79
CLK3-209ENST00000562670 IFT172Q9UG01 1749 aa19.96■□□□□ 0.79
CLK3-209ENST00000562670 MYOM2P54296 1465 aa19.96■□□□□ 0.79
CLK3-209ENST00000562670 KDM5AP29375 1690 aaKnown RBP19.94■□□□□ 0.78
CLK3-209ENST00000562670 RALGAPBQ86X10 1494 aa19.94■□□□□ 0.78
CLK3-209ENST00000562670 C3P01024 1663 aa19.94■□□□□ 0.78
CLK3-209ENST00000562670 PRAG1Q86YV5 1406 aa19.93■□□□□ 0.78
CLK3-209ENST00000562670 MADDQ8WXG6 1647 aa19.93■□□□□ 0.78
CLK3-209ENST00000562670 TMEM131LA2VDJ0 1609 aa19.92■□□□□ 0.78
CLK3-209ENST00000562670 CFAP65Q6ZU64 1925 aaKnown RBP19.92■□□□□ 0.78
CLK3-209ENST00000562670 NRXN1Q9ULB1 1477 aa19.9■□□□□ 0.78
CLK3-209ENST00000562670 PPLO60437 1756 aa19.89■□□□□ 0.77
CLK3-209ENST00000562670 RPGRIP1LQ68CZ1 1315 aa19.89■□□□□ 0.77
CLK3-209ENST00000562670 TRPM1Q7Z4N2 1603 aa19.88■□□□□ 0.77
CLK3-209ENST00000562670 NLRP1Q9C000 1473 aa19.88■□□□□ 0.77
CLK3-209ENST00000562670 TNRQ92752 1358 aa19.88■□□□□ 0.77
CLK3-209ENST00000562670 LAMC1P11047 1609 aa19.87■□□□□ 0.77
CLK3-209ENST00000562670 NEXMIFQ5QGS0 1516 aa19.87■□□□□ 0.77
CLK3-209ENST00000562670 FBXO31Q5XUX0 539 aaPredicted RBP19.87■□□□□ 0.77
CLK3-209ENST00000562670 DCAF11Q8TEB1 546 aa19.87■□□□□ 0.77
CLK3-209ENST00000562670 KIAA1210Q9ULL0 1709 aa19.87■□□□□ 0.77
CLK3-209ENST00000562670 RIMS1Q86UR5 1692 aaKnown RBP19.87■□□□□ 0.77
CLK3-209ENST00000562670 IDI1Q13907 227 aa19.86■□□□□ 0.77
CLK3-209ENST00000562670 NBPF8Q3BBV2 869 aa19.86■□□□□ 0.77
CLK3-209ENST00000562670 ZFYVE9O95405 1425 aa19.85■□□□□ 0.77
CLK3-209ENST00000562670 RGL3Q3MIN7 710 aa19.85■□□□□ 0.77
CLK3-209ENST00000562670 GPRASP1Q5JY77 1395 aa19.84■□□□□ 0.77
CLK3-209ENST00000562670 A2ML1A8K2U0 1454 aa19.83■□□□□ 0.76
CLK3-209ENST00000562670 MYO5BQ9ULV0 1848 aa19.81■□□□□ 0.76
CLK3-209ENST00000562670 UBR1Q8IWV7 1749 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms