RNA–Protein interactions for RNA: ENST00000562668.1

SMG1-206, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 3

Gene SMG1, Length 449 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-206ENST00000562668 PPP1R3GB7ZBB8 358 aa11.8□□□□□ -0.52
SMG1-206ENST00000562668 DDX12PQ92771 950 aa11.78□□□□□ -0.52
SMG1-206ENST00000562668 STAC3Q96MF2 364 aa11.78□□□□□ -0.52
SMG1-206ENST00000562668 COL9A1P20849 921 aa11.75□□□□□ -0.53
SMG1-206ENST00000562668 NBR1Q14596 966 aa11.74□□□□□ -0.53
SMG1-206ENST00000562668 BHMG1C9JSJ3 638 aaPredicted RBP11.72□□□□□ -0.53
SMG1-206ENST00000562668 EN1Q05925 392 aaPredicted RBP11.72□□□□□ -0.53
SMG1-206ENST00000562668 RBM33Q96EV2 1170 aaKnown RBP11.72□□□□□ -0.53
SMG1-206ENST00000562668 C6orf132Q5T0Z8 1188 aa11.71□□□□□ -0.53
SMG1-206ENST00000562668 KCTD12Q96CX2 325 aaKnown RBP11.71□□□□□ -0.53
SMG1-206ENST00000562668 NBPF3Q9H094 633 aa11.71□□□□□ -0.53
SMG1-206ENST00000562668 PROX2Q3B8N5 592 aa11.7□□□□□ -0.54
SMG1-206ENST00000562668 HCSTQ9UBK5 93 aa11.7□□□□□ -0.54
SMG1-206ENST00000562668 PLCB2Q00722 1185 aa11.69□□□□□ -0.54
SMG1-206ENST00000562668 MAP3K7O43318 606 aa11.68□□□□□ -0.54
SMG1-206ENST00000562668 MRPL50Q8N5N7 158 aaKnown RBP11.68□□□□□ -0.54
SMG1-206ENST00000562668 RABGEF1Q9UJ41 708 aa11.68□□□□□ -0.54
SMG1-206ENST00000562668 KCNV2Q8TDN2 545 aa11.66□□□□□ -0.54
SMG1-206ENST00000562668 GRXCR2A6NFK2 248 aa11.65□□□□□ -0.54
SMG1-206ENST00000562668 TSR1Q2NL82 804 aaKnown RBP11.65□□□□□ -0.54
SMG1-206ENST00000562668 GOLGA8CPA6NN73 597 aa11.64□□□□□ -0.55
SMG1-206ENST00000562668 PRIM1P49642 420 aaKnown RBP11.63□□□□□ -0.55
SMG1-206ENST00000562668 ARHGEF1Q92888 912 aaKnown RBP11.63□□□□□ -0.55
SMG1-206ENST00000562668 TRIM6-TRIM34B2RNG4 842 aa11.62□□□□□ -0.55
SMG1-206ENST00000562668 ONECUT3O60422 494 aaPredicted RBP11.62□□□□□ -0.55
SMG1-206ENST00000562668 WNT2BQ93097 391 aa11.62□□□□□ -0.55
SMG1-206ENST00000562668 THSD4Q6ZMP0 1018 aa11.61□□□□□ -0.55
SMG1-206ENST00000562668 P3H3Q8IVL6 736 aa11.6□□□□□ -0.55
SMG1-206ENST00000562668 KIAA1468Q9P260 1216 aa11.6□□□□□ -0.55
SMG1-206ENST00000562668 OSBPP22059 807 aa11.59□□□□□ -0.55
SMG1-206ENST00000562668 LAPTM4BQ86VI4 370 aa11.59□□□□□ -0.55
SMG1-206ENST00000562668 PTPN5P54829 565 aa11.57□□□□□ -0.56
SMG1-206ENST00000562668 ANKK1Q8NFD2 765 aa11.56□□□□□ -0.56
SMG1-206ENST00000562668 CERKQ8TCT0 537 aa11.56□□□□□ -0.56
SMG1-206ENST00000562668 CDHR5Q9HBB8 845 aa11.56□□□□□ -0.56
SMG1-206ENST00000562668 SEPT9Q9UHD8 586 aaPredicted RBP11.56□□□□□ -0.56
SMG1-206ENST00000562668 TSKSQ9UJT2 592 aa11.55□□□□□ -0.56
SMG1-206ENST00000562668 PLA2G2EQ9NZK7 142 aa11.54□□□□□ -0.56
SMG1-206ENST00000562668 CDCA7LQ96GN5 454 aa11.53□□□□□ -0.56
SMG1-206ENST00000562668 MLLT3P42568 568 aaPredicted RBP11.52□□□□□ -0.57
SMG1-206ENST00000562668 PRSS12P56730 875 aa11.52□□□□□ -0.57
SMG1-206ENST00000562668 FAM98CQ17RN3 349 aaKnown RBP11.52□□□□□ -0.57
SMG1-206ENST00000562668 PACS2Q86VP3 889 aa11.52□□□□□ -0.57
SMG1-206ENST00000562668 ZFRQ96KR1 1074 aaKnown RBP11.52□□□□□ -0.57
SMG1-206ENST00000562668 HAP1P54257 671 aaPredicted RBP11.5□□□□□ -0.57
SMG1-206ENST00000562668 RBM27Q9P2N5 1060 aaKnown RBP11.5□□□□□ -0.57
SMG1-206ENST00000562668 SOWAHBA6NEL2 793 aa11.49□□□□□ -0.57
SMG1-206ENST00000562668 BCAMP50895 628 aa11.49□□□□□ -0.57
SMG1-206ENST00000562668 FAM198AQ9UFP1 575 aa11.49□□□□□ -0.57
SMG1-206ENST00000562668 NBPF26B4DH59 902 aa11.48□□□□□ -0.57
SMG1-206ENST00000562668 LRCH3Q96II8 777 aa11.44□□□□□ -0.58
SMG1-206ENST00000562668 NPDC1Q9NQX5 325 aaPredicted RBP11.44□□□□□ -0.58
SMG1-206ENST00000562668 SMAPO00193 183 aa11.43□□□□□ -0.58
SMG1-206ENST00000562668 PADI6Q6TGC4 694 aa11.43□□□□□ -0.58
SMG1-206ENST00000562668 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.43□□□□□ -0.58
SMG1-206ENST00000562668 C3orf80F5H4A9 247 aa11.42□□□□□ -0.58
SMG1-206ENST00000562668 SEMA3EO15041 775 aa11.42□□□□□ -0.58
SMG1-206ENST00000562668 TATDN2Q93075 761 aa11.42□□□□□ -0.58
SMG1-206ENST00000562668 PNMA3Q9UL41 463 aa11.42□□□□□ -0.58
SMG1-206ENST00000562668 TTC13Q8NBP0 860 aa11.41□□□□□ -0.58
SMG1-206ENST00000562668 NYAP1Q6ZVC0 841 aa11.4□□□□□ -0.58
SMG1-206ENST00000562668 NUDT18Q6ZVK8 323 aa11.39□□□□□ -0.59
SMG1-206ENST00000562668 WBP1LQ9NX94 342 aa11.39□□□□□ -0.59
SMG1-206ENST00000562668 TSR3Q9UJK0 312 aaKnown RBP11.39□□□□□ -0.59
SMG1-206ENST00000562668 HPS5Q9UPZ3 1129 aa11.39□□□□□ -0.59
SMG1-206ENST00000562668 PTGDRQ13258 359 aa11.37□□□□□ -0.59
SMG1-206ENST00000562668 IFFO2Q5TF58 517 aa11.37□□□□□ -0.59
SMG1-206ENST00000562668 SAMD7Q7Z3H4 446 aa11.37□□□□□ -0.59
SMG1-206ENST00000562668 KDM2AQ9Y2K7 1162 aa11.36□□□□□ -0.59
SMG1-206ENST00000562668 NUTM2FA1L443 756 aa11.35□□□□□ -0.59
SMG1-206ENST00000562668 TESPA1A2RU30 521 aaPredicted RBP11.35□□□□□ -0.59
SMG1-206ENST00000562668 ITGBL1O95965 494 aaPredicted RBP11.34□□□□□ -0.59
SMG1-206ENST00000562668 FCHSD2O94868 740 aa11.3□□□□□ -0.6
SMG1-206ENST00000562668 PPP4CP60510 307 aa11.3□□□□□ -0.6
SMG1-206ENST00000562668 A0A0G2JS52 829 aa11.29□□□□□ -0.6
SMG1-206ENST00000562668 RNF40O75150 1001 aa11.29□□□□□ -0.6
SMG1-206ENST00000562668 SMYD5Q6GMV2 418 aa11.29□□□□□ -0.6
SMG1-206ENST00000562668 VSIG10Q8N0Z9 540 aa11.29□□□□□ -0.6
SMG1-206ENST00000562668 EYA1Q99502 592 aa11.29□□□□□ -0.6
SMG1-206ENST00000562668 HDGFP51858 240 aaKnown RBP11.28□□□□□ -0.6
SMG1-206ENST00000562668 SWT1Q5T5J6 900 aaKnown RBP11.27□□□□□ -0.61
SMG1-206ENST00000562668 RBM26Q5T8P6 1007 aaKnown RBP11.26□□□□□ -0.61
SMG1-206ENST00000562668 ADGRG1Q9Y653 693 aa11.26□□□□□ -0.61
SMG1-206ENST00000562668 KCNC4Q03721 635 aa11.24□□□□□ -0.61
SMG1-206ENST00000562668 SLF2Q8IX21 1173 aa11.24□□□□□ -0.61
SMG1-206ENST00000562668 RBM46Q8TBY0 533 aaKnown RBP11.24□□□□□ -0.61
SMG1-206ENST00000562668 NECTIN2Q92692 538 aa11.24□□□□□ -0.61
SMG1-206ENST00000562668 DNAJB2P25686 324 aa11.23□□□□□ -0.61
SMG1-206ENST00000562668 SLC4A3P48751 1232 aa11.22□□□□□ -0.61
SMG1-206ENST00000562668 HIC1Q14526 733 aa11.22□□□□□ -0.61
SMG1-206ENST00000562668 FAM161AQ3B820 660 aa11.21□□□□□ -0.61
SMG1-206ENST00000562668 GPR37O15354 613 aa11.2□□□□□ -0.62
SMG1-206ENST00000562668 RGS20O76081 388 aa11.2□□□□□ -0.62
SMG1-206ENST00000562668 APLP1P51693 650 aa11.19□□□□□ -0.62
SMG1-206ENST00000562668 TMEM134Q9H6X4 195 aa11.19□□□□□ -0.62
SMG1-206ENST00000562668 MTRQ99707 1265 aa11.18□□□□□ -0.62
SMG1-206ENST00000562668 RCCD1A6NED2 376 aa11.17□□□□□ -0.62
SMG1-206ENST00000562668 TJAP1Q5JTD0 557 aa11.17□□□□□ -0.62
SMG1-206ENST00000562668 GNPATO15228 680 aa11.16□□□□□ -0.62
SMG1-206ENST00000562668 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms