RNA–Protein interactions for RNA: ENST00000562028.1

DENND4A-204, Transcript of DENN domain containing 4A, humanhuman

TSL 3

Gene DENND4A, Length 481 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DENND4A-204ENST00000562028 NPDC1Q9NQX5 325 aaPredicted RBP12.5□□□□□ -0.41
DENND4A-204ENST00000562028 KRI1Q8N9T8 703 aaKnown RBP12.49□□□□□ -0.41
DENND4A-204ENST00000562028 CDHR5Q9HBB8 845 aa12.49□□□□□ -0.41
DENND4A-204ENST00000562028 CERKQ8TCT0 537 aa12.48□□□□□ -0.41
DENND4A-204ENST00000562028 BCL2L12Q9HB09 334 aa12.48□□□□□ -0.41
DENND4A-204ENST00000562028 MINK1Q8N4C8 1332 aaPredicted RBP12.45□□□□□ -0.42
DENND4A-204ENST00000562028 AK7Q96M32 723 aa12.45□□□□□ -0.42
DENND4A-204ENST00000562028 ERBB3P21860 1342 aa12.44□□□□□ -0.42
DENND4A-204ENST00000562028 MAP2K5Q13163 448 aa12.44□□□□□ -0.42
DENND4A-204ENST00000562028 FAM163AQ96GL9 167 aaPredicted RBP12.44□□□□□ -0.42
DENND4A-204ENST00000562028 FECHP22830 423 aa12.42□□□□□ -0.42
DENND4A-204ENST00000562028 PTPREP23469 700 aa12.42□□□□□ -0.42
DENND4A-204ENST00000562028 EMP3P54852 163 aa12.42□□□□□ -0.42
DENND4A-204ENST00000562028 IRF6O14896 467 aa12.4□□□□□ -0.42
DENND4A-204ENST00000562028 VARS2Q5ST30 1063 aaKnown RBP12.4□□□□□ -0.42
DENND4A-204ENST00000562028 MARVELD3Q96A59 401 aa12.4□□□□□ -0.42
DENND4A-204ENST00000562028 RBM27Q9P2N5 1060 aaKnown RBP12.39□□□□□ -0.43
DENND4A-204ENST00000562028 PPP1R3GB7ZBB8 358 aa12.38□□□□□ -0.43
DENND4A-204ENST00000562028 COL9A1P20849 921 aa12.36□□□□□ -0.43
DENND4A-204ENST00000562028 PRSS12P56730 875 aa12.36□□□□□ -0.43
DENND4A-204ENST00000562028 CCDC102AQ96A19 550 aa12.36□□□□□ -0.43
DENND4A-204ENST00000562028 KCNH8Q96L42 1107 aa12.36□□□□□ -0.43
DENND4A-204ENST00000562028 TRIM66O15016 1216 aa12.35□□□□□ -0.43
DENND4A-204ENST00000562028 TTC13Q8NBP0 860 aa12.35□□□□□ -0.43
DENND4A-204ENST00000562028 FAM205CA6NFA0 338 aa12.34□□□□□ -0.43
DENND4A-204ENST00000562028 LCE2DQ5TA82 110 aaPredicted RBP12.34□□□□□ -0.43
DENND4A-204ENST00000562028 PADI6Q6TGC4 694 aa12.34□□□□□ -0.43
DENND4A-204ENST00000562028 CDCA7LQ96GN5 454 aa12.34□□□□□ -0.43
DENND4A-204ENST00000562028 KCNK17Q96T54 332 aa12.34□□□□□ -0.43
DENND4A-204ENST00000562028 ZNF687Q8N1G0 1237 aa12.33□□□□□ -0.44
DENND4A-204ENST00000562028 ARHGAP33O14559 1287 aa12.31□□□□□ -0.44
DENND4A-204ENST00000562028 PBX2P40425 430 aa12.31□□□□□ -0.44
DENND4A-204ENST00000562028 BRPF1P55201 1214 aaPredicted RBP12.31□□□□□ -0.44
DENND4A-204ENST00000562028 HS3ST6Q96QI5 342 aa12.3□□□□□ -0.44
DENND4A-204ENST00000562028 POTEEQ6S8J3 1075 aa12.29□□□□□ -0.44
DENND4A-204ENST00000562028 ONECUT3O60422 494 aaPredicted RBP12.28□□□□□ -0.44
DENND4A-204ENST00000562028 OATP04181 439 aa12.28□□□□□ -0.44
DENND4A-204ENST00000562028 PDE4DQ08499 809 aa12.28□□□□□ -0.44
DENND4A-204ENST00000562028 NEUROD2Q15784 382 aa12.28□□□□□ -0.44
DENND4A-204ENST00000562028 AMHR2Q16671 573 aa12.28□□□□□ -0.44
DENND4A-204ENST00000562028 ADGRG1Q9Y653 693 aa12.28□□□□□ -0.44
DENND4A-204ENST00000562028 TRIM6-TRIM34B2RNG4 842 aa12.27□□□□□ -0.45
DENND4A-204ENST00000562028 PSEN2P49810 448 aa12.27□□□□□ -0.45
DENND4A-204ENST00000562028 TSKSQ9UJT2 592 aa12.27□□□□□ -0.45
DENND4A-204ENST00000562028 POTEB3A0JP26 581 aa12.26□□□□□ -0.45
DENND4A-204ENST00000562028 POTEBQ6S5H4 581 aa12.26□□□□□ -0.45
DENND4A-204ENST00000562028 ZBED2Q9BTP6 218 aa12.26□□□□□ -0.45
DENND4A-204ENST00000562028 FAM198AQ9UFP1 575 aa12.26□□□□□ -0.45
DENND4A-204ENST00000562028 SLC4A5Q9BY07 1137 aa12.25□□□□□ -0.45
DENND4A-204ENST00000562028 METTL3Q86U44 580 aaKnown RBP12.24□□□□□ -0.45
DENND4A-204ENST00000562028 PACS2Q86VP3 889 aa12.24□□□□□ -0.45
DENND4A-204ENST00000562028 AXIN2Q9Y2T1 843 aa12.24□□□□□ -0.45
DENND4A-204ENST00000562028 FAM161AQ3B820 660 aa12.23□□□□□ -0.45
DENND4A-204ENST00000562028 PXYLP1Q8TE99 480 aa12.23□□□□□ -0.45
DENND4A-204ENST00000562028 PROX2Q3B8N5 592 aa12.22□□□□□ -0.45
DENND4A-204ENST00000562028 RBM46Q8TBY0 533 aaKnown RBP12.22□□□□□ -0.45
DENND4A-204ENST00000562028 NBPF26B4DH59 902 aa12.21□□□□□ -0.45
DENND4A-204ENST00000562028 DMRTA1Q5VZB9 504 aa12.21□□□□□ -0.45
DENND4A-204ENST00000562028 PHOX2BQ99453 314 aa12.21□□□□□ -0.45
DENND4A-204ENST00000562028 EYA1Q99502 592 aa12.2□□□□□ -0.46
DENND4A-204ENST00000562028 TATDN2Q93075 761 aa12.19□□□□□ -0.46
DENND4A-204ENST00000562028 NUDT18Q6ZVK8 323 aa12.18□□□□□ -0.46
DENND4A-204ENST00000562028 PARP9Q8IXQ6 854 aa12.18□□□□□ -0.46
DENND4A-204ENST00000562028 KDM4CQ9H3R0 1056 aa12.18□□□□□ -0.46
DENND4A-204ENST00000562028 GPBP1L1Q9HC44 474 aaPredicted RBP12.18□□□□□ -0.46
DENND4A-204ENST00000562028 KIAA1468Q9P260 1216 aa12.18□□□□□ -0.46
DENND4A-204ENST00000562028 RABGEF1Q9UJ41 708 aa12.18□□□□□ -0.46
DENND4A-204ENST00000562028 CLCN1P35523 988 aa12.17□□□□□ -0.46
DENND4A-204ENST00000562028 TTLL12Q14166 644 aaPredicted RBP12.17□□□□□ -0.46
DENND4A-204ENST00000562028 PNMA3Q9UL41 463 aa12.17□□□□□ -0.46
DENND4A-204ENST00000562028 VPS9D1Q9Y2B5 631 aa12.17□□□□□ -0.46
DENND4A-204ENST00000562028 TMUB1Q9BVT8 246 aa12.16□□□□□ -0.46
DENND4A-204ENST00000562028 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.15□□□□□ -0.46
DENND4A-204ENST00000562028 C3orf80F5H4A9 247 aa12.15□□□□□ -0.46
DENND4A-204ENST00000562028 TK2O00142 265 aa12.15□□□□□ -0.46
DENND4A-204ENST00000562028 GPCPD1Q9NPB8 672 aa12.15□□□□□ -0.46
DENND4A-204ENST00000562028 MDM2Q00987 491 aaPredicted RBP12.14□□□□□ -0.47
DENND4A-204ENST00000562028 RCCD1A6NED2 376 aa12.13□□□□□ -0.47
DENND4A-204ENST00000562028 LSM11P83369 360 aaKnown RBP eCLIP12.13□□□□□ -0.47
DENND4A-204ENST00000562028 TMEM132AQ24JP5 1023 aa12.12□□□□□ -0.47
DENND4A-204ENST00000562028 GIGYF2Q6Y7W6 1299 aaKnown RBP12.12□□□□□ -0.47
DENND4A-204ENST00000562028 REPIN1Q9BWE0 567 aaKnown RBP12.12□□□□□ -0.47
DENND4A-204ENST00000562028 DAXXQ9UER7 740 aaPredicted RBP12.12□□□□□ -0.47
DENND4A-204ENST00000562028 SMAPO00193 183 aa12.11□□□□□ -0.47
DENND4A-204ENST00000562028 DNAJB2P25686 324 aa12.11□□□□□ -0.47
DENND4A-204ENST00000562028 BHMG1C9JSJ3 638 aaPredicted RBP12.09□□□□□ -0.47
DENND4A-204ENST00000562028 NLRP7Q8WX94 980 aa12.09□□□□□ -0.47
DENND4A-204ENST00000562028 NBPF3Q9H094 633 aa12.09□□□□□ -0.47
DENND4A-204ENST00000562028 ADGRD1Q6QNK2 874 aa12.08□□□□□ -0.48
DENND4A-204ENST00000562028 LAPTM4BQ86VI4 370 aa12.08□□□□□ -0.48
DENND4A-204ENST00000562028 TMEM134Q9H6X4 195 aa12.07□□□□□ -0.48
DENND4A-204ENST00000562028 FAM98CQ17RN3 349 aaKnown RBP12.06□□□□□ -0.48
DENND4A-204ENST00000562028 DDRGK1Q96HY6 314 aa12.06□□□□□ -0.48
DENND4A-204ENST00000562028 FAM217BQ9NTX9 383 aaPredicted RBP12.06□□□□□ -0.48
DENND4A-204ENST00000562028 SEPT9Q9UHD8 586 aaPredicted RBP12.06□□□□□ -0.48
DENND4A-204ENST00000562028 MS4A1P11836 297 aa12.05□□□□□ -0.48
DENND4A-204ENST00000562028 SSTR3P32745 418 aaPredicted RBP12.05□□□□□ -0.48
DENND4A-204ENST00000562028 FAM117AQ9C073 453 aa12.05□□□□□ -0.48
DENND4A-204ENST00000562028 HRO43593 1189 aa12.04□□□□□ -0.48
DENND4A-204ENST00000562028 ANKRD13DQ6ZTN6 518 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms