RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 KDM5CP41229 1560 aa10.63□□□□□ -0.71
VPS39-204ENST00000561818 DEPDC5O75140 1603 aa10.62□□□□□ -0.71
VPS39-204ENST00000561818 NEURL4Q96JN8 1562 aa10.62□□□□□ -0.71
VPS39-204ENST00000561818 CCDC144AA2RUR9 1427 aa10.62□□□□□ -0.71
VPS39-204ENST00000561818 POGZQ7Z3K3 1410 aa10.62□□□□□ -0.71
VPS39-204ENST00000561818 SCAPERQ9BY12 1400 aa10.62□□□□□ -0.71
VPS39-204ENST00000561818 PKD2Q13563 968 aa10.62□□□□□ -0.71
VPS39-204ENST00000561818 SIN3AQ96ST3 1273 aa10.62□□□□□ -0.71
VPS39-204ENST00000561818 CENPBP07199 599 aaPredicted RBP10.61□□□□□ -0.71
VPS39-204ENST00000561818 UHRF1BP1Q6BDS2 1440 aa10.6□□□□□ -0.71
VPS39-204ENST00000561818 TRAPPC8Q9Y2L5 1435 aa10.6□□□□□ -0.71
VPS39-204ENST00000561818 PRDM15P57071 1507 aaPredicted RBP10.6□□□□□ -0.71
VPS39-204ENST00000561818 BCORL1Q5H9F3 1711 aa10.6□□□□□ -0.71
VPS39-204ENST00000561818 DHX29Q7Z478 1369 aaKnown RBP10.6□□□□□ -0.71
VPS39-204ENST00000561818 HECW2Q9P2P5 1572 aa10.6□□□□□ -0.71
VPS39-204ENST00000561818 ARID4BQ4LE39 1312 aaPredicted RBP10.59□□□□□ -0.71
VPS39-204ENST00000561818 EIF4G2P78344 907 aaKnown RBP eCLIP10.59□□□□□ -0.71
VPS39-204ENST00000561818 RIMBP3CA6NJZ7 1639 aa10.58□□□□□ -0.72
VPS39-204ENST00000561818 RIMBP3BA6NNM3 1639 aa10.58□□□□□ -0.72
VPS39-204ENST00000561818 RIMBP3Q9UFD9 1639 aa10.58□□□□□ -0.72
VPS39-204ENST00000561818 MAP3K4Q9Y6R4 1608 aa10.58□□□□□ -0.72
VPS39-204ENST00000561818 LMTK2Q8IWU2 1503 aa10.58□□□□□ -0.72
VPS39-204ENST00000561818 TET3O43151 1660 aa10.57□□□□□ -0.72
VPS39-204ENST00000561818 SLC24A1O60721 1099 aa10.57□□□□□ -0.72
VPS39-204ENST00000561818 VWDEQ8N2E2 1590 aa10.56□□□□□ -0.72
VPS39-204ENST00000561818 A2MP01023 1474 aa10.56□□□□□ -0.72
VPS39-204ENST00000561818 RNF17Q9BXT8 1623 aaKnown RBP10.56□□□□□ -0.72
VPS39-204ENST00000561818 RALGAPBQ86X10 1494 aa10.55□□□□□ -0.72
VPS39-204ENST00000561818 TRPM2O94759 1503 aa10.55□□□□□ -0.72
VPS39-204ENST00000561818 L3MBTL2Q969R5 705 aa10.55□□□□□ -0.72
VPS39-204ENST00000561818 ZMYM4Q5VZL5 1548 aa10.54□□□□□ -0.72
VPS39-204ENST00000561818 ROCK2O75116 1388 aaKnown RBP10.53□□□□□ -0.72
VPS39-204ENST00000561818 PTPRTO14522 1441 aa10.53□□□□□ -0.72
VPS39-204ENST00000561818 MYT1LQ9UL68 1186 aa10.53□□□□□ -0.72
VPS39-204ENST00000561818 LAMC1P11047 1609 aa10.53□□□□□ -0.72
VPS39-204ENST00000561818 ZC3H13Q5T200 1668 aaKnown RBP10.53□□□□□ -0.72
VPS39-204ENST00000561818 DIP2BQ9P265 1576 aa10.52□□□□□ -0.72
VPS39-204ENST00000561818 REREQ9P2R6 1566 aa10.52□□□□□ -0.72
VPS39-204ENST00000561818 KIDINS220Q9ULH0 1771 aa10.52□□□□□ -0.72
VPS39-204ENST00000561818 AFAP1Q8N556 730 aa10.52□□□□□ -0.73
VPS39-204ENST00000561818 EFCAB6Q5THR3 1501 aa10.51□□□□□ -0.73
VPS39-204ENST00000561818 POLR1AO95602 1720 aaPredicted RBP10.5□□□□□ -0.73
VPS39-204ENST00000561818 SPHKAPQ2M3C7 1700 aa10.5□□□□□ -0.73
VPS39-204ENST00000561818 ANP32CO43423 234 aa10.49□□□□□ -0.73
VPS39-204ENST00000561818 CYB5RLQ6IPT4 315 aa10.49□□□□□ -0.73
VPS39-204ENST00000561818 CNTLNQ9NXG0 1405 aa10.49□□□□□ -0.73
VPS39-204ENST00000561818 RICTORQ6R327 1708 aa10.48□□□□□ -0.73
VPS39-204ENST00000561818 CCER2I3L3R5 266 aa10.48□□□□□ -0.73
VPS39-204ENST00000561818 ARHGAP31Q2M1Z3 1444 aa10.48□□□□□ -0.73
VPS39-204ENST00000561818 CEP152O94986 1710 aa10.47□□□□□ -0.73
VPS39-204ENST00000561818 KIF3BO15066 747 aa10.47□□□□□ -0.73
VPS39-204ENST00000561818 CNKSR2Q8WXI2 1034 aa10.47□□□□□ -0.73
VPS39-204ENST00000561818 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS39-204ENST00000561818 GPRASP1Q5JY77 1395 aa10.47□□□□□ -0.73
VPS39-204ENST00000561818 SPATA31E1Q6ZUB1 1445 aa10.47□□□□□ -0.73
VPS39-204ENST00000561818 PRAG1Q86YV5 1406 aa10.47□□□□□ -0.73
VPS39-204ENST00000561818 AGLP35573 1532 aa10.47□□□□□ -0.73
VPS39-204ENST00000561818 USP47Q96K76 1375 aa10.46□□□□□ -0.74
VPS39-204ENST00000561818 E9PCH4 1651 aa10.46□□□□□ -0.74
VPS39-204ENST00000561818 MROH1Q8NDA8 1641 aa10.45□□□□□ -0.74
VPS39-204ENST00000561818 DIP2CQ9Y2E4 1556 aa10.45□□□□□ -0.74
VPS39-204ENST00000561818 MYOM2P54296 1465 aa10.45□□□□□ -0.74
VPS39-204ENST00000561818 EIF3AQ14152 1382 aaKnown RBP10.45□□□□□ -0.74
VPS39-204ENST00000561818 KTN1Q86UP2 1357 aaKnown RBP10.45□□□□□ -0.74
VPS39-204ENST00000561818 KIAA1210Q9ULL0 1709 aa10.44□□□□□ -0.74
VPS39-204ENST00000561818 ABCA6Q8N139 1617 aa10.44□□□□□ -0.74
VPS39-204ENST00000561818 PLA2R1Q13018 1463 aa10.44□□□□□ -0.74
VPS39-204ENST00000561818 RPGRIP1LQ68CZ1 1315 aa10.44□□□□□ -0.74
VPS39-204ENST00000561818 HSPA5P11021 654 aaKnown RBP10.44□□□□□ -0.74
VPS39-204ENST00000561818 HOXD11P31277 338 aaPredicted RBP10.43□□□□□ -0.74
VPS39-204ENST00000561818 FAM69CQ0P6D2 419 aa10.43□□□□□ -0.74
VPS39-204ENST00000561818 CDCA8Q53HL2 280 aa10.43□□□□□ -0.74
VPS39-204ENST00000561818 DCAF11Q8TEB1 546 aa10.43□□□□□ -0.74
VPS39-204ENST00000561818 CARD11Q9BXL7 1154 aa10.43□□□□□ -0.74
VPS39-204ENST00000561818 CCDC7Q96M83 1385 aa10.42□□□□□ -0.74
VPS39-204ENST00000561818 MIER1Q8N108 512 aa10.42□□□□□ -0.74
VPS39-204ENST00000561818 TRPM1Q7Z4N2 1603 aa10.42□□□□□ -0.74
VPS39-204ENST00000561818 FRMPD1Q5SYB0 1578 aa10.42□□□□□ -0.74
VPS39-204ENST00000561818 ABCC3O15438 1527 aa10.42□□□□□ -0.74
VPS39-204ENST00000561818 KIF1BO60333 1816 aa10.41□□□□□ -0.74
VPS39-204ENST00000561818 WASHC2CQ9Y4E1 1318 aa10.4□□□□□ -0.74
VPS39-204ENST00000561818 SLC52A1Q9NWF4 448 aa10.4□□□□□ -0.74
VPS39-204ENST00000561818 PPRC1Q5VV67 1664 aaKnown RBP10.4□□□□□ -0.74
VPS39-204ENST00000561818 DDX10Q13206 875 aaKnown RBP10.39□□□□□ -0.75
VPS39-204ENST00000561818 NBPF8Q3BBV2 869 aa10.39□□□□□ -0.75
VPS39-204ENST00000561818 CAMSAP1Q5T5Y3 1602 aa10.39□□□□□ -0.75
VPS39-204ENST00000561818 ADGRB3O60242 1522 aa10.38□□□□□ -0.75
VPS39-204ENST00000561818 ARHGEF40Q8TER5 1519 aa10.38□□□□□ -0.75
VPS39-204ENST00000561818 WASHC2AQ641Q2 1341 aa10.38□□□□□ -0.75
VPS39-204ENST00000561818 CLTCL1P53675 1640 aa10.38□□□□□ -0.75
VPS39-204ENST00000561818 NOS1P29475 1434 aa10.38□□□□□ -0.75
VPS39-204ENST00000561818 NPATQ14207 1427 aa10.38□□□□□ -0.75
VPS39-204ENST00000561818 MADDQ8WXG6 1647 aa10.37□□□□□ -0.75
VPS39-204ENST00000561818 SCAF11Q99590 1463 aaKnown RBP10.36□□□□□ -0.75
VPS39-204ENST00000561818 SETBP1Q9Y6X0 1596 aa10.36□□□□□ -0.75
VPS39-204ENST00000561818 ZNF326Q5BKZ1 582 aaKnown RBP10.36□□□□□ -0.75
VPS39-204ENST00000561818 RNF216Q9NWF9 866 aaPredicted RBP10.36□□□□□ -0.75
VPS39-204ENST00000561818 ZFYVE9O95405 1425 aa10.35□□□□□ -0.75
VPS39-204ENST00000561818 TMF1P82094 1093 aa10.35□□□□□ -0.75
VPS39-204ENST00000561818 SBNO2Q9Y2G9 1366 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 155.7 ms