RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 GNPATO15228 680 aa11.16□□□□□ -0.62
LRRC28-220ENST00000561253 FOSBP53539 338 aa11.16□□□□□ -0.62
LRRC28-220ENST00000561253 LHX8Q68G74 356 aa11.16□□□□□ -0.62
LRRC28-220ENST00000561253 ZNF454Q8N9F8 522 aa11.16□□□□□ -0.62
LRRC28-220ENST00000561253 PTGDRQ13258 359 aa11.14□□□□□ -0.63
LRRC28-220ENST00000561253 ZDHHC16Q969W1 377 aa11.13□□□□□ -0.63
LRRC28-220ENST00000561253 MINK1Q8N4C8 1332 aaPredicted RBP11.12□□□□□ -0.63
LRRC28-220ENST00000561253 MAP2K5Q13163 448 aa11.12□□□□□ -0.63
LRRC28-220ENST00000561253 NEUROD2Q15784 382 aa11.12□□□□□ -0.63
LRRC28-220ENST00000561253 TSR1Q2NL82 804 aaKnown RBP11.12□□□□□ -0.63
LRRC28-220ENST00000561253 CDHR5Q9HBB8 845 aa11.12□□□□□ -0.63
LRRC28-220ENST00000561253 LHX6Q9UPM6 363 aa11.12□□□□□ -0.63
LRRC28-220ENST00000561253 BRPF1P55201 1214 aaPredicted RBP11.11□□□□□ -0.63
LRRC28-220ENST00000561253 PSDA5PKW4 1024 aaPredicted RBP11.1□□□□□ -0.63
LRRC28-220ENST00000561253 HOXB1P14653 301 aaPredicted RBP11.1□□□□□ -0.63
LRRC28-220ENST00000561253 EIF4G1Q04637 1599 aaKnown RBP11.1□□□□□ -0.63
LRRC28-220ENST00000561253 CECR2Q9BXF3 1484 aa11.09□□□□□ -0.63
LRRC28-220ENST00000561253 FECHP22830 423 aa11.08□□□□□ -0.64
LRRC28-220ENST00000561253 PPP4R3BQ5MIZ7 849 aa11.08□□□□□ -0.64
LRRC28-220ENST00000561253 C6orf132Q5T0Z8 1188 aa11.08□□□□□ -0.64
LRRC28-220ENST00000561253 NPDC1Q9NQX5 325 aaPredicted RBP11.08□□□□□ -0.64
LRRC28-220ENST00000561253 IRF6O14896 467 aa11.07□□□□□ -0.64
LRRC28-220ENST00000561253 TRIM66O15016 1216 aa11.07□□□□□ -0.64
LRRC28-220ENST00000561253 ADAM33Q9BZ11 813 aa11.07□□□□□ -0.64
LRRC28-220ENST00000561253 CERKQ8TCT0 537 aa11.06□□□□□ -0.64
LRRC28-220ENST00000561253 CCDC102AQ96A19 550 aa11.06□□□□□ -0.64
LRRC28-220ENST00000561253 PDE4DQ08499 809 aa11.02□□□□□ -0.65
LRRC28-220ENST00000561253 TMEM132AQ24JP5 1023 aa11.01□□□□□ -0.65
LRRC28-220ENST00000561253 BCL2L12Q9HB09 334 aa11.01□□□□□ -0.65
LRRC28-220ENST00000561253 CC2D2AQ9P2K1 1620 aa10.99□□□□□ -0.65
LRRC28-220ENST00000561253 PTPREP23469 700 aa10.99□□□□□ -0.65
LRRC28-220ENST00000561253 GPBP1L1Q9HC44 474 aaPredicted RBP10.99□□□□□ -0.65
LRRC28-220ENST00000561253 SMARCA4P51532 1647 aa10.98□□□□□ -0.65
LRRC28-220ENST00000561253 PADI6Q6TGC4 694 aa10.98□□□□□ -0.65
LRRC28-220ENST00000561253 BAZ1AQ9NRL2 1556 aaPredicted RBP10.98□□□□□ -0.65
LRRC28-220ENST00000561253 RBM27Q9P2N5 1060 aaKnown RBP10.97□□□□□ -0.65
LRRC28-220ENST00000561253 MROH2BQ7Z745 1585 aa10.97□□□□□ -0.65
LRRC28-220ENST00000561253 ERBB3P21860 1342 aa10.96□□□□□ -0.65
LRRC28-220ENST00000561253 PRSS12P56730 875 aa10.96□□□□□ -0.65
LRRC28-220ENST00000561253 AMHR2Q16671 573 aa10.96□□□□□ -0.65
LRRC28-220ENST00000561253 CDCA7LQ96GN5 454 aa10.96□□□□□ -0.65
LRRC28-220ENST00000561253 KDM4CQ9H3R0 1056 aa10.96□□□□□ -0.65
LRRC28-220ENST00000561253 PPP1R3GB7ZBB8 358 aa10.95□□□□□ -0.66
LRRC28-220ENST00000561253 COL9A1P20849 921 aa10.95□□□□□ -0.66
LRRC28-220ENST00000561253 KCNH8Q96L42 1107 aa10.95□□□□□ -0.66
LRRC28-220ENST00000561253 ST18O60284 1047 aa10.94□□□□□ -0.66
LRRC28-220ENST00000561253 TTLL12Q14166 644 aaPredicted RBP10.94□□□□□ -0.66
LRRC28-220ENST00000561253 OATP04181 439 aa10.93□□□□□ -0.66
LRRC28-220ENST00000561253 PEG3Q9GZU2 1588 aa10.93□□□□□ -0.66
LRRC28-220ENST00000561253 ATAD2BQ9ULI0 1458 aa10.93□□□□□ -0.66
LRRC28-220ENST00000561253 EMP3P54852 163 aa10.92□□□□□ -0.66
LRRC28-220ENST00000561253 FAM161AQ3B820 660 aa10.92□□□□□ -0.66
LRRC28-220ENST00000561253 VARS2Q5ST30 1063 aaKnown RBP10.92□□□□□ -0.66
LRRC28-220ENST00000561253 TTC13Q8NBP0 860 aa10.92□□□□□ -0.66
LRRC28-220ENST00000561253 KCNK17Q96T54 332 aa10.92□□□□□ -0.66
LRRC28-220ENST00000561253 DAXXQ9UER7 740 aaPredicted RBP10.92□□□□□ -0.66
LRRC28-220ENST00000561253 NCAPD3P42695 1498 aa10.92□□□□□ -0.66
LRRC28-220ENST00000561253 PARP9Q8IXQ6 854 aa10.91□□□□□ -0.66
LRRC28-220ENST00000561253 RSF1Q96T23 1441 aaPredicted RBP10.91□□□□□ -0.66
LRRC28-220ENST00000561253 FAM163AQ96GL9 167 aaPredicted RBP10.9□□□□□ -0.66
LRRC28-220ENST00000561253 ADGRG1Q9Y653 693 aa10.9□□□□□ -0.66
LRRC28-220ENST00000561253 METTL3Q86U44 580 aaKnown RBP10.89□□□□□ -0.67
LRRC28-220ENST00000561253 MARVELD3Q96A59 401 aa10.89□□□□□ -0.67
LRRC28-220ENST00000561253 IL27Q8NEV9 243 aa10.88□□□□□ -0.67
LRRC28-220ENST00000561253 RBM46Q8TBY0 533 aaKnown RBP10.88□□□□□ -0.67
LRRC28-220ENST00000561253 CLCN1P35523 988 aa10.87□□□□□ -0.67
LRRC28-220ENST00000561253 PXYLP1Q8TE99 480 aa10.87□□□□□ -0.67
LRRC28-220ENST00000561253 SMARCA2P51531 1590 aa10.86□□□□□ -0.67
LRRC28-220ENST00000561253 TRIM6-TRIM34B2RNG4 842 aa10.86□□□□□ -0.67
LRRC28-220ENST00000561253 MDM2Q00987 491 aaPredicted RBP10.86□□□□□ -0.67
LRRC28-220ENST00000561253 PHOX2BQ99453 314 aa10.86□□□□□ -0.67
LRRC28-220ENST00000561253 FAM198AQ9UFP1 575 aa10.86□□□□□ -0.67
LRRC28-220ENST00000561253 TSKSQ9UJT2 592 aa10.86□□□□□ -0.67
LRRC28-220ENST00000561253 FAM205CA6NFA0 338 aa10.85□□□□□ -0.67
LRRC28-220ENST00000561253 ARHGAP33O14559 1287 aa10.85□□□□□ -0.67
LRRC28-220ENST00000561253 GIGYF2Q6Y7W6 1299 aaKnown RBP10.85□□□□□ -0.67
LRRC28-220ENST00000561253 PACS2Q86VP3 889 aa10.85□□□□□ -0.67
LRRC28-220ENST00000561253 GPCPD1Q9NPB8 672 aa10.85□□□□□ -0.67
LRRC28-220ENST00000561253 HMGXB3Q12766 1538 aa10.84□□□□□ -0.67
LRRC28-220ENST00000561253 NBPF26B4DH59 902 aa10.84□□□□□ -0.67
LRRC28-220ENST00000561253 PSEN2P49810 448 aa10.84□□□□□ -0.67
LRRC28-220ENST00000561253 DDRGK1Q96HY6 314 aa10.84□□□□□ -0.67
LRRC28-220ENST00000561253 PROX2Q3B8N5 592 aa10.83□□□□□ -0.68
LRRC28-220ENST00000561253 NUDT18Q6ZVK8 323 aa10.83□□□□□ -0.68
LRRC28-220ENST00000561253 REPIN1Q9BWE0 567 aaKnown RBP10.83□□□□□ -0.68
LRRC28-220ENST00000561253 FAM117AQ9C073 453 aa10.83□□□□□ -0.68
LRRC28-220ENST00000561253 ONECUT3O60422 494 aaPredicted RBP10.82□□□□□ -0.68
LRRC28-220ENST00000561253 NLRP7Q8WX94 980 aa10.82□□□□□ -0.68
LRRC28-220ENST00000561253 ZBED2Q9BTP6 218 aa10.82□□□□□ -0.68
LRRC28-220ENST00000561253 PNMA3Q9UL41 463 aa10.82□□□□□ -0.68
LRRC28-220ENST00000561253 PBX2P40425 430 aa10.81□□□□□ -0.68
LRRC28-220ENST00000561253 ZNF687Q8N1G0 1237 aa10.81□□□□□ -0.68
LRRC28-220ENST00000561253 TATDN2Q93075 761 aa10.81□□□□□ -0.68
LRRC28-220ENST00000561253 TMUB1Q9BVT8 246 aa10.81□□□□□ -0.68
LRRC28-220ENST00000561253 AXIN2Q9Y2T1 843 aa10.81□□□□□ -0.68
LRRC28-220ENST00000561253 GTF3C3Q9Y5Q9 886 aa10.81□□□□□ -0.68
LRRC28-220ENST00000561253 WIZO95785 1651 aa10.8□□□□□ -0.68
LRRC28-220ENST00000561253 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.8□□□□□ -0.68
LRRC28-220ENST00000561253 EYA1Q99502 592 aa10.8□□□□□ -0.68
LRRC28-220ENST00000561253 MS4A1P11836 297 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms