RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 DIP2BQ9P265 1576 aa18.42■□□□□ 0.54
SNX1-211ENST00000560829 ATP10AO60312 1499 aa18.42■□□□□ 0.54
SNX1-211ENST00000560829 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.41■□□□□ 0.546e-7■■□□□ 13.5
SNX1-211ENST00000560829 PLA2R1Q13018 1463 aa18.39■□□□□ 0.53
SNX1-211ENST00000560829 VWDEQ8N2E2 1590 aa18.39■□□□□ 0.53
SNX1-211ENST00000560829 HECW2Q9P2P5 1572 aa18.38■□□□□ 0.53
SNX1-211ENST00000560829 A2MP01023 1474 aa18.37■□□□□ 0.53
SNX1-211ENST00000560829 FAM69CQ0P6D2 419 aa18.37■□□□□ 0.53
SNX1-211ENST00000560829 PRDM15P57071 1507 aaPredicted RBP18.36■□□□□ 0.53
SNX1-211ENST00000560829 MYT1LQ9UL68 1186 aa18.36■□□□□ 0.53
SNX1-211ENST00000560829 CCDC144AA2RUR9 1427 aa18.35■□□□□ 0.53
SNX1-211ENST00000560829 NBPF8Q3BBV2 869 aa18.34■□□□□ 0.53
SNX1-211ENST00000560829 UHRF1BP1Q6BDS2 1440 aa18.34■□□□□ 0.53
SNX1-211ENST00000560829 MROH1Q8NDA8 1641 aa18.34■□□□□ 0.53
SNX1-211ENST00000560829 KANK1Q14678 1352 aa18.34■□□□□ 0.53
SNX1-211ENST00000560829 KIF3BO15066 747 aa18.33■□□□□ 0.53
SNX1-211ENST00000560829 FRMPD1Q5SYB0 1578 aa18.33■□□□□ 0.53
SNX1-211ENST00000560829 RAPGEF3O95398 923 aa18.31■□□□□ 0.52
SNX1-211ENST00000560829 RNF17Q9BXT8 1623 aaKnown RBP18.31■□□□□ 0.52
SNX1-211ENST00000560829 RICTORQ6R327 1708 aa18.31■□□□□ 0.52
SNX1-211ENST00000560829 TET3O43151 1660 aa18.3■□□□□ 0.52
SNX1-211ENST00000560829 PTPRTO14522 1441 aa18.3■□□□□ 0.52
SNX1-211ENST00000560829 ABCA6Q8N139 1617 aa18.3■□□□□ 0.52
SNX1-211ENST00000560829 LMTK2Q8IWU2 1503 aa18.3■□□□□ 0.52
SNX1-211ENST00000560829 BCORL1Q5H9F3 1711 aa18.3■□□□□ 0.52
SNX1-211ENST00000560829 E9PCH4 1651 aa18.28■□□□□ 0.52
SNX1-211ENST00000560829 TRPM2O94759 1503 aa18.27■□□□□ 0.52
SNX1-211ENST00000560829 ZMYM4Q5VZL5 1548 aa18.27■□□□□ 0.52
SNX1-211ENST00000560829 PPRC1Q5VV67 1664 aaKnown RBP18.27■□□□□ 0.52
SNX1-211ENST00000560829 EIF4G2P78344 907 aaKnown RBP eCLIP18.27■□□□□ 0.52
SNX1-211ENST00000560829 DIP2CQ9Y2E4 1556 aa18.27■□□□□ 0.52
SNX1-211ENST00000560829 MIER1Q8N108 512 aa18.26■□□□□ 0.51
SNX1-211ENST00000560829 HSPA5P11021 654 aaKnown RBP18.25■□□□□ 0.51
SNX1-211ENST00000560829 HIRIP3Q9BW71 556 aaPredicted RBP18.24■□□□□ 0.51
SNX1-211ENST00000560829 SPATA31E1Q6ZUB1 1445 aa18.24■□□□□ 0.51
SNX1-211ENST00000560829 RALGAPBQ86X10 1494 aa18.24■□□□□ 0.51
SNX1-211ENST00000560829 EFCAB6Q5THR3 1501 aa18.24■□□□□ 0.51
SNX1-211ENST00000560829 DCAF11Q8TEB1 546 aa18.21■□□□□ 0.51
SNX1-211ENST00000560829 YEATS2Q9ULM3 1422 aa18.21■□□□□ 0.51
SNX1-211ENST00000560829 SPHKAPQ2M3C7 1700 aa18.19■□□□□ 0.5
SNX1-211ENST00000560829 NEURL4Q96JN8 1562 aa18.19■□□□□ 0.5
SNX1-211ENST00000560829 PRAG1Q86YV5 1406 aa18.19■□□□□ 0.5
SNX1-211ENST00000560829 DDX10Q13206 875 aaKnown RBP18.18■□□□□ 0.5
SNX1-211ENST00000560829 KIF13AQ9H1H9 1805 aa18.18■□□□□ 0.5
SNX1-211ENST00000560829 ABCC3O15438 1527 aa18.16■□□□□ 0.5
SNX1-211ENST00000560829 CLTCL1P53675 1640 aa18.16■□□□□ 0.5
SNX1-211ENST00000560829 ZNF326Q5BKZ1 582 aaKnown RBP18.16■□□□□ 0.5
SNX1-211ENST00000560829 STAC3Q96MF2 364 aa18.16■□□□□ 0.5
SNX1-211ENST00000560829 REREQ9P2R6 1566 aa18.15■□□□□ 0.5
SNX1-211ENST00000560829 RGL3Q3MIN7 710 aa18.15■□□□□ 0.5
SNX1-211ENST00000560829 GGT6Q6P531 493 aa18.15■□□□□ 0.5
SNX1-211ENST00000560829 KDM2AQ9Y2K7 1162 aa18.15■□□□□ 0.5
SNX1-211ENST00000560829 USP47Q96K76 1375 aa18.14■□□□□ 0.49
SNX1-211ENST00000560829 WASHC2AQ641Q2 1341 aa18.14■□□□□ 0.49
SNX1-211ENST00000560829 NPATQ14207 1427 aa18.14■□□□□ 0.49
SNX1-211ENST00000560829 TSPOAP1O95153 1857 aa18.13■□□□□ 0.49
SNX1-211ENST00000560829 CEP152O94986 1710 aa18.13■□□□□ 0.49
SNX1-211ENST00000560829 GPRASP1Q5JY77 1395 aa18.12■□□□□ 0.49
SNX1-211ENST00000560829 ARHGAP31Q2M1Z3 1444 aa18.12■□□□□ 0.49
SNX1-211ENST00000560829 WASHC2CQ9Y4E1 1318 aa18.12■□□□□ 0.49
SNX1-211ENST00000560829 COL17A1Q9UMD9 1497 aaPredicted RBP18.11■□□□□ 0.49
SNX1-211ENST00000560829 AGLP35573 1532 aa18.11■□□□□ 0.49
SNX1-211ENST00000560829 CNTLNQ9NXG0 1405 aa18.11■□□□□ 0.49
SNX1-211ENST00000560829 TRPM1Q7Z4N2 1603 aa18.1■□□□□ 0.49
SNX1-211ENST00000560829 CARD11Q9BXL7 1154 aa18.1■□□□□ 0.49
SNX1-211ENST00000560829 ZC3H13Q5T200 1668 aaKnown RBP18.1■□□□□ 0.49
SNX1-211ENST00000560829 CCDC7Q96M83 1385 aa18.1■□□□□ 0.49
SNX1-211ENST00000560829 ROCK2O75116 1388 aaKnown RBP18.08■□□□□ 0.49
SNX1-211ENST00000560829 CAMSAP1Q5T5Y3 1602 aa18.08■□□□□ 0.48
SNX1-211ENST00000560829 NOS1P29475 1434 aa18.08■□□□□ 0.48
SNX1-211ENST00000560829 C11orf95C9JLR9 678 aaPredicted RBP18.07■□□□□ 0.48
SNX1-211ENST00000560829 LAMC1P11047 1609 aa18.07■□□□□ 0.48
SNX1-211ENST00000560829 UGGT1Q9NYU2 1555 aa18.06■□□□□ 0.48
SNX1-211ENST00000560829 ARID4BQ4LE39 1312 aaPredicted RBP18.06■□□□□ 0.48
SNX1-211ENST00000560829 PPP6R1Q9UPN7 881 aa18.05■□□□□ 0.48
SNX1-211ENST00000560829 ARHGEF40Q8TER5 1519 aa18.05■□□□□ 0.48
SNX1-211ENST00000560829 KIF7Q2M1P5 1343 aa18.04■□□□□ 0.48
SNX1-211ENST00000560829 ADGRB3O60242 1522 aa18.04■□□□□ 0.48
SNX1-211ENST00000560829 MADDQ8WXG6 1647 aa18.04■□□□□ 0.48
SNX1-211ENST00000560829 MYOM2P54296 1465 aa18.03■□□□□ 0.48
SNX1-211ENST00000560829 NBPF1Q3BBV0 1214 aa18.02■□□□□ 0.48
SNX1-211ENST00000560829 POLR1AO95602 1720 aaPredicted RBP18.01■□□□□ 0.47
SNX1-211ENST00000560829 ANP32CO43423 234 aa17.99■□□□□ 0.47
SNX1-211ENST00000560829 PIK3C2BO00750 1634 aa17.99■□□□□ 0.47
SNX1-211ENST00000560829 ST20-MTHFSA0A0A6YYL1 179 aa17.99■□□□□ 0.47
SNX1-211ENST00000560829 SYNMO15061 1565 aa17.98■□□□□ 0.47
SNX1-211ENST00000560829 KIF1BO60333 1816 aa17.98■□□□□ 0.47
SNX1-211ENST00000560829 NRXN1Q9ULB1 1477 aa17.98■□□□□ 0.47
SNX1-211ENST00000560829 SIGLEC1Q9BZZ2 1709 aa17.98■□□□□ 0.47
SNX1-211ENST00000560829 CCER2I3L3R5 266 aa17.97■□□□□ 0.47
SNX1-211ENST00000560829 RPGRIP1LQ68CZ1 1315 aa17.96■□□□□ 0.47
SNX1-211ENST00000560829 MROH2AA6NES4 1674 aa17.96■□□□□ 0.47
SNX1-211ENST00000560829 IFT172Q9UG01 1749 aa17.95■□□□□ 0.46
SNX1-211ENST00000560829 SLC52A1Q9NWF4 448 aa17.95■□□□□ 0.46
SNX1-211ENST00000560829 KIAA1210Q9ULL0 1709 aa17.95■□□□□ 0.46
SNX1-211ENST00000560829 CENPBP07199 599 aaPredicted RBP17.95■□□□□ 0.46
SNX1-211ENST00000560829 ADGRF5Q8IZF2 1346 aa17.92■□□□□ 0.46
SNX1-211ENST00000560829 TESK2Q96S53 571 aa17.91■□□□□ 0.46
SNX1-211ENST00000560829 ERVK-7P63135 1459 aa17.91■□□□□ 0.46
SNX1-211ENST00000560829 SCAF11Q99590 1463 aaKnown RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms